Rorug01G0082200
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004354
Physical Location & Seq
Forward (+)
13391742 .. 13392490
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0082200.1

Sequence Viewer

Length: 579 bp
ATGTCAGCCTCCTTCACTCCCTCAGATAACTACCCCCTCAACTGTGGCTGTTCCTCCACGCCTCCTTCTTCAACCGCGTCTTCGTCGGAGATTCCGCTTCCGGGTCGTCGGGTTTTGTCTCCGCAGGCTGGTCCATTTCAGTCACCAGCAACAAAAGCCCACTTCCAAACTCACCCTCTCCTTACAACACAGCAAGAGTTTTCACCACTGCTTCAAGCTATAGCTTCAGCATCAAGAAAATCGGAACTCACTTGCCCTTTGGGAAATTCGGGTTTTGGTTATGTGAATGCAATTGAAGTTTTTACAGCTCCTGGGGACCTTATTCTGGACTATGGTGCTAAGTTGGTGAGTGCCAATGTAGATGAGTACAGAAACCTTTCTTCGCAGGTTTTAGAGACTATTTATAGGATCAATGTTGGAGGTTCAAACTTGACTCCTTTTAATGTTACAATATGGAGGTTTTGGGTCCCTGATGTGGAGTATCTTTCTCTGAAATCGGCTACTAAGCGTGCCTCGACCACTGATGTGCTGATTTATCAGAGTGGAGGTGAAAGTAGAGAGATTGGAATGTTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

192

Amino Acids

20.73

Weight (kDa)

5.65

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccII CGCG 1 cut(s) 77
AciI CCGC 3 cut(s) 75, 95, 122
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 101, 128, 325, 475
AgsI TTSAA 4 cut(s) 72, 215, 296, 426
AjnI CCWGG 1 cut(s) 310
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 3 cut(s) 218, 224, 308
AluI AGCT 3 cut(s) 218, 224, 308
Alw26I GTCTC 2 cut(s) 123, 389
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 311
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 131, 316, 466
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 5 cut(s) 135, 164, 195, 358, 560
AvaII GGWCC 3 cut(s) 131, 316, 466
BbsI GAAGAC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 2 cut(s) 123, 389
BfmI CTRYAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 102, 312
Bme18I GGWCC 3 cut(s) 131, 316, 466
BmgT120I GGNCC 3 cut(s) 131, 316, 466
BmiI GGNNCC 3 cut(s) 317, 467, 468
BmrFI CCNGG 2 cut(s) 102, 312
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 128, 325, 475
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 311
BseLI CCNNNNNNNGG 4 cut(s) 101, 128, 325, 475
BseMII CTCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 329, 452
BslI CCNNNNNNNGG 4 cut(s) 101, 128, 325, 475
BsmAI GTCTC 2 cut(s) 123, 389
BsmFI GGGAC 2 cut(s) 329, 452
BsmI GAATGC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 3 cut(s) 75, 95, 122
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 317, 467, 468
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 126, 510
BstDEI CTNAG 3 cut(s) 22, 339, 504
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 123, 389
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 100, 310
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 519
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 126, 510
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 131, 316, 466
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 367
CviJI RGCY 8 cut(s) 8, 48, 128, 158, 218, 224, 308, 500
CviKI_1 RGCY 8 cut(s) 8, 48, 128, 158, 218, 224, 308, 500
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 22, 339, 504
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
Eco47I GGWCC 3 cut(s) 131, 316, 466
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 316, 466
EcoRII CCWGG 1 cut(s) 310
FaiI YATR 7 cut(s) 221, 282, 333, 405, 454, 575, 577
FaqI GGGAC 2 cut(s) 329, 452
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 66
HinfI GANTC 2 cut(s) 91, 433
HpaII CCGG 1 cut(s) 101
HphI GGTGA 5 cut(s) 135, 164, 195, 358, 560
Hpy188I TCNGA 5 cut(s) 25, 88, 244, 492, 540
Hpy188III TCNNGA 2 cut(s) 234, 326
Hpy99I CGWCG 2 cut(s) 88, 111
HpyAV CCTTC 2 cut(s) 22, 75
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 22, 339, 504
KflI GGGWCCC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 9 cut(s) 110, 114, 114, 159, 297, 311, 324, 371, 483
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 141, 445
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 3 cut(s) 60, 72, 372
MfeI CAATTG 1 cut(s) 291
MluCI AATT 2 cut(s) 265, 291
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 66, 397
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 524
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 102, 312
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 102
NdeII GATC 1 cut(s) 408
NlaIV GGNNCC 3 cut(s) 317, 467, 468
NmuCI GTSAC 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 524
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PpuMI RGGWCCY 2 cut(s) 316, 466
Psp5II RGGWCCY 2 cut(s) 316, 466
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 317, 467, 468
PspPI GGNCC 3 cut(s) 131, 316, 466
PspPPI RGGWCCY 2 cut(s) 316, 466
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 3 cut(s) 131, 316, 466
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 2 cut(s) 102, 312
SetI ASST 9 cut(s) 220, 226, 310, 321, 378, 390, 424, 461, 550
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 3 cut(s) 131, 316, 466
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 2 cut(s) 265, 291
SsiI CCGC 3 cut(s) 75, 95, 122
StyD4I CCNGG 2 cut(s) 100, 310
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 515
TasI AATT 2 cut(s) 265, 291
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 213, 526
TseFI GTSAC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 141
TspRI CASTG 2 cut(s) 213, 526
VpaK11BI GGWCC 3 cut(s) 131, 316, 466
XapI RAATTY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.