MD15G1426500.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
52712708 .. 52714947
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1426500.v1.1.491

Sequence Viewer

Length: 1980 bp
ATGACACTGTTTCAGCGATACCCTGCTCTTTCCTCCACCCACGCCACCTTTACTTCCTGTTCCAGTGCGTCTGCATTTATGGGTCATGAGCATGAGGAATTTGAGGCTGAGCATCAGAGTAGGATCAATACATCCAAACAGAGTGGAATGGATAATGGGTATTATGGTCAAAATAGTGGGCAGGTGCAACAGAAACTAAATGGGGCATGTGCTGATGGTTCACGGGATCCCCAGTATAGTCAAAGTAACAATGGGATTTTCTGGAGAAGCACAGGCAACGAATTTATGAATGACCCAGTTCAACAAAATGGAAATTTTAGAGGGTATTATGGTCATGAAAATAGATGGTTGCAAAAAACCCCAAACCTGCATGGGAAACATTTAGGAAATGGAAATATACAGAATCCATATGTGTCTCGGAAGGAGCCATCCATAGAAGTCAGACAGAATCCCGATGATTTTAAATCACAAGTAAATTCAGGATCGCAGGGAAACCATAATCAGAATTCTATGCAAAGTTATGCACATTATCGGCAAAATACCAATGGTTACTCTGAAATGCATCAGCCGAACCCTAATTATGGACAACATCAACAGAATTCTAGTTATGGAAACGGGCAATACCAGCAACACCCTAGTTATGGGCAATACCAGCAAAACCCTAGTTATGAACAATATCAGACAAATTCAGGTGCTTTTCAAAATACGATAGTGGATTCTCACATAGGAAGTGAGTCAAAATCTGAAGCACAATTAATTGAGGCTTCGGAAGATAGCCCGTCTAGTTCCAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAGGCTGTGGAGATCTTGGGACTGCTAGAGAAGCAGCACGTTCATGTAGATTTGCATCACTTTTTACAGTTGATGCAAGCATGCGGTGAGGCCAAGGCTCTAGAAGAAGCAAAAGTTGTTCATGACAGCATTACAAGATTATTGCCTCCTTTGAATGTGAGTACGTACAACAAAATCTTGGAGATGTATTCTAAATGTGGTTCTATGGACAACGCATTTTTGGTTTTCAACAAGATGCCAAACCGGAATTTGACATCGTGGGACATTATGATAACATGGTTTGCTAAGAATGGTCTTGGGGAAGATGCCATTGATCTATTTACCCAATTCAAGAAAGCAGGCTTGAAACCCGATGGCCAATTGTTTATTGGCGTTTTATACGCTTGTAGTGTCGTGGGAGATATTAATGAAGGATTGCTGCATTTTGAATCAATGAGCAAAGATTATGGTATTGTCCCAAATGTGGATCATTATGTGAGTGTAGTAGATATGCTAGGAAGTATGGGCTATCTAGATGAAGCTTTGGAATTCATTGAAAAGATGCCATTGGAACCTAATGTTGATGTTTGGAAGACCTTGATGAATCACTGTAGAGTTCATGGGCAGTTGGAGCTTGGGGACCGGTGTGCGGAGCTTATTGAGCAGCTACATCCCTCCTGCTTAGATGAGCAATCAAAGGCTGGCCTTATTCCTGTAAAAGAATCTGACCTGGTAAAGGAGAAAGAGAAGAAAAAAATAGCAGCACAAAATCTTTTAGAAGTGAGGAGCCGAGTCCATGAATATCGAGCAGGTGATAAATCGCATCCTGAGAACGATGAAATTTATGCTCAACTCAGGGGTTTAAGGGAACAGATGAAGGAGGCTGGCTACATTCCGGAAACGAGATTTGTGTTACATGACATAGATCAGGAAGGCAAGGAAGATGCTTTGCTTGCCCATAGTGAGAGACTTGCTCTTGCTCATGGCCTCATCAGCAGCTCAGCTCGTTCAACTATTAGGGTTATCAAGAATCTTCGTGTTTGTGGCGATTGCCATAACGCACTGAAGATCATTTCGAAAATTGTAGGCAGAGAACTCATCATGCGAGATGCTAAGAGGTTCCACCATTTCAAAGACGGATTGTGTTCTTGCCGAGATTATTGGTGA

Protein Analysis

660

Amino Acids

74.57

Weight (kDa)

5.95

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 330 - 362 6.1e-06 PPR repeat family
Eplus_motif PF20430 536 - 558 6e-06 E+ motif
DYW_deaminase PF14432 567 - 659 1.3e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019134)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 172, 1613
Acc36I ACCTGC 3 cut(s) 172, 375, 1613
AccIII TCCGGA 1 cut(s) 1708
AciI CCGC 2 cut(s) 918, 1463
AclWI GGATC 6 cut(s) 131, 221, 234, 490, 813, 1308
AcoI YGGCCR 1 cut(s) 1189
AcuI CTGAAG 2 cut(s) 765, 1898
AfaI GTAC 2 cut(s) 997, 1001
AfiI CCNNNNNNNGG 5 cut(s) 581, 641, 1297, 1462, 1549
AgeI ACCGGT 1 cut(s) 1455
AjnI CCWGG 1 cut(s) 1542
AluBI AGCT 6 cut(s) 1355, 1447, 1468, 1480, 1812, 1817
AluI AGCT 6 cut(s) 1355, 1447, 1468, 1480, 1812, 1817
Alw26I GTCTC 2 cut(s) 420, 1774
AlwI GGATC 6 cut(s) 131, 221, 234, 490, 813, 1308
Aor13HI TCCGGA 1 cut(s) 1708
AoxI GGCC 4 cut(s) 924, 1189, 1516, 1798
ApeKI GCWGC 5 cut(s) 868, 1252, 1477, 1574, 1809
AseI ATTAAT 2 cut(s) 755, 1239
AsiGI ACCGGT 1 cut(s) 1455
AspS9I GGNCC 1 cut(s) 1453
AsuHPI GGTGA 2 cut(s) 932, 1637
AsuII TTCGAA 1 cut(s) 1889
AvaII GGWCC 1 cut(s) 1453
BalI TGGCCA 1 cut(s) 1191
BamHI GGATCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 1412
BbvI GCAGC 5 cut(s) 880, 1239, 1489, 1586, 1821
BccI CCATC 4 cut(s) 209, 339, 436, 1181
BciT130I CCWGG 1 cut(s) 1544
BcoDI GTCTC 2 cut(s) 420, 1774
BfaI CTAG 8 cut(s) 603, 636, 663, 783, 860, 935, 1328, 1346
BfmI CTRYAG 1 cut(s) 1423
BfuAI ACCTGC 3 cut(s) 172, 375, 1613
BglII AGATCT 1 cut(s) 846
BisI GCNGC 5 cut(s) 869, 1253, 1478, 1575, 1810
BlpI GCTNAGC 2 cut(s) 108, 1813
BlsI GCNGC 5 cut(s) 870, 1254, 1479, 1576, 1811
Bme1390I CCNGG 1 cut(s) 1544
Bme18I GGWCC 1 cut(s) 1453
BmgT120I GGNCC 1 cut(s) 1453
BmiI GGNNCC 6 cut(s) 228, 426, 1386, 1454, 1601, 1934
BmrFI CCNGG 1 cut(s) 1544
BmrI ACTGGG 2 cut(s) 226, 290
BmuI ACTGGG 2 cut(s) 226, 290
BpiI GAAGAC 1 cut(s) 1412
BplI GAGNNNNNCTC 2 cut(s) 1771, 1803
BpmI CTGGAG 1 cut(s) 283
Bpu1102I GCTNAGC 2 cut(s) 108, 1813
Bpu14I TTCGAA 1 cut(s) 1889
BsaAI YACGTR 1 cut(s) 999
BsaBI GATNNNNATC 1 cut(s) 888
BsaJI CCNNGG 1 cut(s) 927
BsaWI WCCGGW 3 cut(s) 1077, 1455, 1708
Bsc4I CCNNNNNNNGG 5 cut(s) 581, 641, 1297, 1462, 1549
Bse118I RCCGGY 1 cut(s) 1455
Bse1I ACTGG 4 cut(s) 63, 232, 296, 789
Bse8I GATNNNNATC 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 1708
BseBI CCWGG 1 cut(s) 1544
BseDI CCNNGG 1 cut(s) 927
BseGI GGATG 4 cut(s) 131, 428, 1483, 1636
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 5 cut(s) 581, 641, 1297, 1462, 1549
BseMII CTCAG 4 cut(s) 99, 1632, 1681, 1827
BseNI ACTGG 4 cut(s) 63, 232, 296, 789
BseRI GAGGAG 1 cut(s) 1612
BseXI GCAGC 5 cut(s) 880, 1239, 1489, 1586, 1821
BshFI GGCC 4 cut(s) 926, 1191, 1518, 1800
BshTI ACCGGT 1 cut(s) 1455
BsiSI CCGG 3 cut(s) 1078, 1456, 1709
BslFI GGGAC 4 cut(s) 867, 1109, 1274, 1466
BslI CCNNNNNNNGG 5 cut(s) 581, 641, 1297, 1462, 1549
BsmAI GTCTC 2 cut(s) 420, 1774
BsmFI GGGAC 4 cut(s) 867, 1109, 1274, 1466
BsnI GGCC 4 cut(s) 926, 1191, 1518, 1800
Bsp119I TTCGAA 1 cut(s) 1889
Bsp13I TCCGGA 1 cut(s) 1708
Bsp143I GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
Bsp1720I GCTNAGC 2 cut(s) 108, 1813
BspACI CCGC 2 cut(s) 918, 1463
BspANI GGCC 4 cut(s) 926, 1191, 1518, 1800
BspCNI CTCAG 4 cut(s) 100, 1633, 1680, 1826
BspEI TCCGGA 1 cut(s) 1708
BspHI TCATGA 3 cut(s) 85, 334, 955
BspLI GGNNCC 6 cut(s) 228, 426, 1386, 1454, 1601, 1934
BspMI ACCTGC 3 cut(s) 172, 375, 1613
BspPI GGATC 6 cut(s) 131, 221, 234, 490, 813, 1308
BspT104I TTCGAA 1 cut(s) 1889
BsrFI RCCGGY 1 cut(s) 1455
BsrI ACTGG 4 cut(s) 63, 232, 296, 789
BssAI RCCGGY 1 cut(s) 1455
BssECI CCNNGG 1 cut(s) 927
BssMI GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 1544
Bst4CI ACNGT 3 cut(s) 9, 903, 1424
Bst6I CTCTTC 1 cut(s) 792
BstBAI YACGTR 1 cut(s) 999
BstBI TTCGAA 1 cut(s) 1889
BstC8I GCNNGC 6 cut(s) 912, 916, 1174, 1516, 1699, 1767
BstDEI CTNAG 7 cut(s) 108, 1119, 1495, 1641, 1667, 1813, 1926
BstENI CCTNNNNNAGG 1 cut(s) 1547
BstF5I GGATG 4 cut(s) 131, 428, 1483, 1636
BstKTI GATC 9 cut(s) 126, 229, 485, 808, 849, 1150, 1303, 1741, 1884
BstMAI GTCTC 2 cut(s) 420, 1774
BstMBI GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
BstMWI GCNNNNNNNGC 7 cut(s) 625, 652, 865, 1444, 1474, 1766, 1806
BstNI CCWGG 1 cut(s) 1544
BstNSI RCATGY 2 cut(s) 210, 918
BstSCI CCNGG 1 cut(s) 1542
BstSFI CTRYAG 1 cut(s) 1423
BstSNI TACGTA 1 cut(s) 999
BstV1I GCAGC 5 cut(s) 880, 1239, 1489, 1586, 1821
BstV2I GAAGAC 1 cut(s) 1412
BstX2I RGATCY 2 cut(s) 226, 846
BstYI RGATCY 2 cut(s) 226, 846
BsuRI GGCC 4 cut(s) 926, 1191, 1518, 1800
BtsCI GGATG 4 cut(s) 131, 428, 1483, 1636
BtsIMutI CAGTG 4 cut(s) 5, 70, 1420, 1874
BveI ACCTGC 3 cut(s) 172, 375, 1613
Cac8I GCNNGC 6 cut(s) 912, 916, 1174, 1516, 1699, 1767
CciI TCATGA 3 cut(s) 85, 334, 955
Cfr10I RCCGGY 1 cut(s) 1455
Cfr13I GGNCC 1 cut(s) 1453
CseI GACGC 1 cut(s) 57
CsiI ACCWGGT 1 cut(s) 1542
Csp6I GTAC 2 cut(s) 996, 1000
CspAI ACCGGT 1 cut(s) 1455
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviQI GTAC 2 cut(s) 996, 1000
DdeI CTNAG 7 cut(s) 108, 1119, 1495, 1641, 1667, 1813, 1926
DpnI GATC 9 cut(s) 125, 228, 484, 807, 848, 1149, 1302, 1740, 1883
DpnII GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
DraI TTTAAA 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 1189
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco105I TACGTA 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 1453
Eco57I CTGAAG 2 cut(s) 765, 1898
EcoNI CCTNNNNNAGG 1 cut(s) 1547
EcoRI GAATTC 3 cut(s) 505, 598, 1361
EcoRII CCWGG 1 cut(s) 1542
EcoT14I CCWWGG 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 927
FaqI GGGAC 4 cut(s) 867, 1109, 1274, 1466
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 869, 1253, 1478, 1575, 1810
FokI GGATG 4 cut(s) 118, 415, 1470, 1623
Fsp4HI GCNGC 5 cut(s) 869, 1253, 1478, 1575, 1810
FspBI CTAG 8 cut(s) 603, 636, 663, 783, 860, 935, 1328, 1346
GluI GCNGC 5 cut(s) 869, 1253, 1478, 1575, 1810
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 4 cut(s) 926, 1191, 1518, 1800
HapII CCGG 3 cut(s) 1078, 1456, 1709
HgaI GACGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 1353
HinfI GANTC 9 cut(s) 403, 448, 716, 734, 1262, 1417, 1535, 1605, 1843
HpaII CCGG 3 cut(s) 1078, 1456, 1709
HphI GGTGA 2 cut(s) 932, 1637
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 9 cut(s) 117, 420, 443, 504, 556, 681, 745, 769, 1540
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 415, 1238, 1684, 1739
HpyCH4III ACNGT 3 cut(s) 9, 903, 1424
HpyCH4IV ACGT 2 cut(s) 873, 998
HpyF10VI GCNNNNNNNGC 7 cut(s) 625, 652, 865, 1444, 1474, 1766, 1806
HpyF3I CTNAG 7 cut(s) 108, 1119, 1495, 1641, 1667, 1813, 1926
HpySE526I ACGT 2 cut(s) 873, 998
Kpn2I TCCGGA 1 cut(s) 1708
Kzo9I GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
LmnI GCTCC 4 cut(s) 424, 1444, 1465, 1599
Lsp1109I GCAGC 5 cut(s) 880, 1239, 1489, 1586, 1821
MabI ACCWGGT 1 cut(s) 1542
MaeI CTAG 8 cut(s) 603, 636, 663, 783, 860, 935, 1328, 1346
MaeII ACGT 2 cut(s) 873, 998
MaeIII GTNAC 3 cut(s) 245, 548, 1725
MalI GATC 9 cut(s) 125, 228, 484, 807, 848, 1149, 1302, 1740, 1883
MboI GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
MboII GAAGA 9 cut(s) 782, 809, 950, 1148, 1417, 1573, 1766, 1838, 1891
MfeI CAATTG 1 cut(s) 1193
MflI RGATCY 2 cut(s) 226, 846
MlsI TGGCCA 1 cut(s) 1191
MluNI TGGCCA 1 cut(s) 1191
MlyI GAGTC 2 cut(s) 743, 1614
MmeI TCCRAC 2 cut(s) 783, 1422
Mox20I TGGCCA 1 cut(s) 1191
Mph1103I ATGCAT 1 cut(s) 564
MroI TCCGGA 1 cut(s) 1708
MscI TGGCCA 1 cut(s) 1191
MseI TTAA 5 cut(s) 462, 755, 831, 1239, 1676
MslI CAYNNNNRTG 2 cut(s) 90, 876
Msp20I TGGCCA 1 cut(s) 1191
MspI CCGG 3 cut(s) 1078, 1456, 1709
MspR9I CCNGG 1 cut(s) 1544
MunI CAATTG 1 cut(s) 1193
MvaI CCWGG 1 cut(s) 1544
MwoI GCNNNNNNNGC 7 cut(s) 625, 652, 865, 1444, 1474, 1766, 1806
NdeI CATATG 1 cut(s) 409
NdeII GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
NlaIV GGNNCC 6 cut(s) 228, 426, 1386, 1454, 1601, 1934
NmeAIII GCCGAG 1 cut(s) 1628
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 2 cut(s) 210, 918
NspV TTCGAA 1 cut(s) 1889
PaeI GCATGC 1 cut(s) 918
PagI TCATGA 3 cut(s) 85, 334, 955
PaqCI CACCTGC 2 cut(s) 172, 1613
PfeI GAWTC 7 cut(s) 403, 448, 716, 1262, 1417, 1535, 1843
PinAI ACCGGT 1 cut(s) 1455
PkrI GCNGC 5 cut(s) 870, 1254, 1479, 1576, 1811
PleI GAGTC 2 cut(s) 742, 1613
PpsI GAGTC 2 cut(s) 742, 1613
Ppu21I YACGTR 1 cut(s) 999
PshBI ATTAAT 2 cut(s) 755, 1239
Psp6I CCWGG 1 cut(s) 1542
PspGI CCWGG 1 cut(s) 1542
PspN4I GGNNCC 6 cut(s) 228, 426, 1386, 1454, 1601, 1934
PspPI GGNCC 1 cut(s) 1453
PsuI RGATCY 2 cut(s) 226, 846
RsaI GTAC 2 cut(s) 997, 1001
RsaNI GTAC 2 cut(s) 996, 1000
RseI CAYNNNNRTG 2 cut(s) 90, 876
SaqAI TTAA 5 cut(s) 462, 755, 831, 1239, 1676
SatI GCNGC 5 cut(s) 869, 1253, 1478, 1575, 1810
Sau3AI GATC 9 cut(s) 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881
Sau96I GGNCC 1 cut(s) 1453
SchI GAGTC 2 cut(s) 743, 1614
ScrFI CCNGG 1 cut(s) 1544
SexAI ACCWGGT 1 cut(s) 1542
SfcI CTRYAG 1 cut(s) 1423
SfuI TTCGAA 1 cut(s) 1889
SinI GGWCC 1 cut(s) 1453
SmiMI CAYNNNNRTG 2 cut(s) 90, 876
SnaBI TACGTA 1 cut(s) 999
SphI GCATGC 1 cut(s) 918
SsiI CCGC 2 cut(s) 918, 1463
SspMI CTAG 8 cut(s) 603, 636, 663, 783, 860, 935, 1328, 1346
StyD4I CCNGG 1 cut(s) 1542
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 3 cut(s) 9, 903, 1424
TaiI ACGT 2 cut(s) 876, 1001
TaqI TCGA 2 cut(s) 1618, 1889
TfiI GAWTC 7 cut(s) 403, 448, 716, 1262, 1417, 1535, 1843
Tru1I TTAA 5 cut(s) 462, 755, 831, 1239, 1676
Tru9I TTAA 5 cut(s) 462, 755, 831, 1239, 1676
TscAI CASTG 4 cut(s) 12, 70, 1427, 1881
TseI GCWGC 5 cut(s) 868, 1252, 1477, 1574, 1809
TspGWI ACGGA 1 cut(s) 1965
TspRI CASTG 4 cut(s) 12, 70, 1427, 1881
VpaK11BI GGWCC 1 cut(s) 1453
VspI ATTAAT 2 cut(s) 755, 1239
XagI CCTNNNNNAGG 1 cut(s) 1547
XbaI TCTAGA 2 cut(s) 934, 1345
XceI RCATGY 2 cut(s) 210, 918
XcmI CCANNNNNNNNNTGG 1 cut(s) 1199
XspI CTAG 8 cut(s) 603, 636, 663, 783, 860, 935, 1328, 1346
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.