Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1235200.v1.1 MD15G1426500.v1.1 |
| pyrus_communis | pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 172, 1613 |
| Acc36I | ACCTGC | 3 cut(s) | 172, 375, 1613 |
| AccIII | TCCGGA | 1 cut(s) | 1708 |
| AciI | CCGC | 2 cut(s) | 918, 1463 |
| AclWI | GGATC | 6 cut(s) | 131, 221, 234, 490, 813, 1308 |
| AcoI | YGGCCR | 1 cut(s) | 1189 |
| AcuI | CTGAAG | 2 cut(s) | 765, 1898 |
| AfaI | GTAC | 2 cut(s) | 997, 1001 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 581, 641, 1297, 1462, 1549 |
| AgeI | ACCGGT | 1 cut(s) | 1455 |
| AjnI | CCWGG | 1 cut(s) | 1542 |
| AluBI | AGCT | 6 cut(s) | 1355, 1447, 1468, 1480, 1812, 1817 |
| AluI | AGCT | 6 cut(s) | 1355, 1447, 1468, 1480, 1812, 1817 |
| Alw26I | GTCTC | 2 cut(s) | 420, 1774 |
| AlwI | GGATC | 6 cut(s) | 131, 221, 234, 490, 813, 1308 |
| Aor13HI | TCCGGA | 1 cut(s) | 1708 |
| AoxI | GGCC | 4 cut(s) | 924, 1189, 1516, 1798 |
| ApeKI | GCWGC | 5 cut(s) | 868, 1252, 1477, 1574, 1809 |
| AseI | ATTAAT | 2 cut(s) | 755, 1239 |
| AsiGI | ACCGGT | 1 cut(s) | 1455 |
| AspS9I | GGNCC | 1 cut(s) | 1453 |
| AsuHPI | GGTGA | 2 cut(s) | 932, 1637 |
| AsuII | TTCGAA | 1 cut(s) | 1889 |
| AvaII | GGWCC | 1 cut(s) | 1453 |
| BalI | TGGCCA | 1 cut(s) | 1191 |
| BamHI | GGATCC | 1 cut(s) | 226 |
| BbsI | GAAGAC | 1 cut(s) | 1412 |
| BbvI | GCAGC | 5 cut(s) | 880, 1239, 1489, 1586, 1821 |
| BccI | CCATC | 4 cut(s) | 209, 339, 436, 1181 |
| BciT130I | CCWGG | 1 cut(s) | 1544 |
| BcoDI | GTCTC | 2 cut(s) | 420, 1774 |
| BfaI | CTAG | 8 cut(s) | 603, 636, 663, 783, 860, 935, 1328, 1346 |
| BfmI | CTRYAG | 1 cut(s) | 1423 |
| BfuAI | ACCTGC | 3 cut(s) | 172, 375, 1613 |
| BglII | AGATCT | 1 cut(s) | 846 |
| BisI | GCNGC | 5 cut(s) | 869, 1253, 1478, 1575, 1810 |
| BlpI | GCTNAGC | 2 cut(s) | 108, 1813 |
| BlsI | GCNGC | 5 cut(s) | 870, 1254, 1479, 1576, 1811 |
| Bme1390I | CCNGG | 1 cut(s) | 1544 |
| Bme18I | GGWCC | 1 cut(s) | 1453 |
| BmgT120I | GGNCC | 1 cut(s) | 1453 |
| BmiI | GGNNCC | 6 cut(s) | 228, 426, 1386, 1454, 1601, 1934 |
| BmrFI | CCNGG | 1 cut(s) | 1544 |
| BmrI | ACTGGG | 2 cut(s) | 226, 290 |
| BmuI | ACTGGG | 2 cut(s) | 226, 290 |
| BpiI | GAAGAC | 1 cut(s) | 1412 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1771, 1803 |
| BpmI | CTGGAG | 1 cut(s) | 283 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 108, 1813 |
| Bpu14I | TTCGAA | 1 cut(s) | 1889 |
| BsaAI | YACGTR | 1 cut(s) | 999 |
| BsaBI | GATNNNNATC | 1 cut(s) | 888 |
| BsaJI | CCNNGG | 1 cut(s) | 927 |
| BsaWI | WCCGGW | 3 cut(s) | 1077, 1455, 1708 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 581, 641, 1297, 1462, 1549 |
| Bse118I | RCCGGY | 1 cut(s) | 1455 |
| Bse1I | ACTGG | 4 cut(s) | 63, 232, 296, 789 |
| Bse8I | GATNNNNATC | 1 cut(s) | 888 |
| BseAI | TCCGGA | 1 cut(s) | 1708 |
| BseBI | CCWGG | 1 cut(s) | 1544 |
| BseDI | CCNNGG | 1 cut(s) | 927 |
| BseGI | GGATG | 4 cut(s) | 131, 428, 1483, 1636 |
| BseJI | GATNNNNATC | 1 cut(s) | 888 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 581, 641, 1297, 1462, 1549 |
| BseMII | CTCAG | 4 cut(s) | 99, 1632, 1681, 1827 |
| BseNI | ACTGG | 4 cut(s) | 63, 232, 296, 789 |
| BseRI | GAGGAG | 1 cut(s) | 1612 |
| BseXI | GCAGC | 5 cut(s) | 880, 1239, 1489, 1586, 1821 |
| BshFI | GGCC | 4 cut(s) | 926, 1191, 1518, 1800 |
| BshTI | ACCGGT | 1 cut(s) | 1455 |
| BsiSI | CCGG | 3 cut(s) | 1078, 1456, 1709 |
| BslFI | GGGAC | 4 cut(s) | 867, 1109, 1274, 1466 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 581, 641, 1297, 1462, 1549 |
| BsmAI | GTCTC | 2 cut(s) | 420, 1774 |
| BsmFI | GGGAC | 4 cut(s) | 867, 1109, 1274, 1466 |
| BsnI | GGCC | 4 cut(s) | 926, 1191, 1518, 1800 |
| Bsp119I | TTCGAA | 1 cut(s) | 1889 |
| Bsp13I | TCCGGA | 1 cut(s) | 1708 |
| Bsp143I | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 108, 1813 |
| BspACI | CCGC | 2 cut(s) | 918, 1463 |
| BspANI | GGCC | 4 cut(s) | 926, 1191, 1518, 1800 |
| BspCNI | CTCAG | 4 cut(s) | 100, 1633, 1680, 1826 |
| BspEI | TCCGGA | 1 cut(s) | 1708 |
| BspHI | TCATGA | 3 cut(s) | 85, 334, 955 |
| BspLI | GGNNCC | 6 cut(s) | 228, 426, 1386, 1454, 1601, 1934 |
| BspMI | ACCTGC | 3 cut(s) | 172, 375, 1613 |
| BspPI | GGATC | 6 cut(s) | 131, 221, 234, 490, 813, 1308 |
| BspT104I | TTCGAA | 1 cut(s) | 1889 |
| BsrFI | RCCGGY | 1 cut(s) | 1455 |
| BsrI | ACTGG | 4 cut(s) | 63, 232, 296, 789 |
| BssAI | RCCGGY | 1 cut(s) | 1455 |
| BssECI | CCNNGG | 1 cut(s) | 927 |
| BssMI | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| BssT1I | CCWWGG | 1 cut(s) | 927 |
| Bst2UI | CCWGG | 1 cut(s) | 1544 |
| Bst4CI | ACNGT | 3 cut(s) | 9, 903, 1424 |
| Bst6I | CTCTTC | 1 cut(s) | 792 |
| BstBAI | YACGTR | 1 cut(s) | 999 |
| BstBI | TTCGAA | 1 cut(s) | 1889 |
| BstC8I | GCNNGC | 6 cut(s) | 912, 916, 1174, 1516, 1699, 1767 |
| BstDEI | CTNAG | 7 cut(s) | 108, 1119, 1495, 1641, 1667, 1813, 1926 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| BstF5I | GGATG | 4 cut(s) | 131, 428, 1483, 1636 |
| BstKTI | GATC | 9 cut(s) | 126, 229, 485, 808, 849, 1150, 1303, 1741, 1884 |
| BstMAI | GTCTC | 2 cut(s) | 420, 1774 |
| BstMBI | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 625, 652, 865, 1444, 1474, 1766, 1806 |
| BstNI | CCWGG | 1 cut(s) | 1544 |
| BstNSI | RCATGY | 2 cut(s) | 210, 918 |
| BstSCI | CCNGG | 1 cut(s) | 1542 |
| BstSFI | CTRYAG | 1 cut(s) | 1423 |
| BstSNI | TACGTA | 1 cut(s) | 999 |
| BstV1I | GCAGC | 5 cut(s) | 880, 1239, 1489, 1586, 1821 |
| BstV2I | GAAGAC | 1 cut(s) | 1412 |
| BstX2I | RGATCY | 2 cut(s) | 226, 846 |
| BstYI | RGATCY | 2 cut(s) | 226, 846 |
| BsuRI | GGCC | 4 cut(s) | 926, 1191, 1518, 1800 |
| BtsCI | GGATG | 4 cut(s) | 131, 428, 1483, 1636 |
| BtsIMutI | CAGTG | 4 cut(s) | 5, 70, 1420, 1874 |
| BveI | ACCTGC | 3 cut(s) | 172, 375, 1613 |
| Cac8I | GCNNGC | 6 cut(s) | 912, 916, 1174, 1516, 1699, 1767 |
| CciI | TCATGA | 3 cut(s) | 85, 334, 955 |
| Cfr10I | RCCGGY | 1 cut(s) | 1455 |
| Cfr13I | GGNCC | 1 cut(s) | 1453 |
| CseI | GACGC | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 1542 |
| Csp6I | GTAC | 2 cut(s) | 996, 1000 |
| CspAI | ACCGGT | 1 cut(s) | 1455 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 124, 159 |
| CviQI | GTAC | 2 cut(s) | 996, 1000 |
| DdeI | CTNAG | 7 cut(s) | 108, 1119, 1495, 1641, 1667, 1813, 1926 |
| DpnI | GATC | 9 cut(s) | 125, 228, 484, 807, 848, 1149, 1302, 1740, 1883 |
| DpnII | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| DraI | TTTAAA | 1 cut(s) | 463 |
| EaeI | YGGCCR | 1 cut(s) | 1189 |
| Eam1104I | CTCTTC | 1 cut(s) | 792 |
| EarI | CTCTTC | 1 cut(s) | 792 |
| Eco105I | TACGTA | 1 cut(s) | 999 |
| Eco130I | CCWWGG | 1 cut(s) | 927 |
| Eco47I | GGWCC | 1 cut(s) | 1453 |
| Eco57I | CTGAAG | 2 cut(s) | 765, 1898 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| EcoRI | GAATTC | 3 cut(s) | 505, 598, 1361 |
| EcoRII | CCWGG | 1 cut(s) | 1542 |
| EcoT14I | CCWWGG | 1 cut(s) | 927 |
| EcoT22I | ATGCAT | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 927 |
| FaqI | GGGAC | 4 cut(s) | 867, 1109, 1274, 1466 |
| FauNDI | CATATG | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 5 cut(s) | 869, 1253, 1478, 1575, 1810 |
| FokI | GGATG | 4 cut(s) | 118, 415, 1470, 1623 |
| Fsp4HI | GCNGC | 5 cut(s) | 869, 1253, 1478, 1575, 1810 |
| FspBI | CTAG | 8 cut(s) | 603, 636, 663, 783, 860, 935, 1328, 1346 |
| GluI | GCNGC | 5 cut(s) | 869, 1253, 1478, 1575, 1810 |
| GsuI | CTGGAG | 1 cut(s) | 283 |
| HaeIII | GGCC | 4 cut(s) | 926, 1191, 1518, 1800 |
| HapII | CCGG | 3 cut(s) | 1078, 1456, 1709 |
| HgaI | GACGC | 1 cut(s) | 57 |
| HindIII | AAGCTT | 1 cut(s) | 1353 |
| HinfI | GANTC | 9 cut(s) | 403, 448, 716, 734, 1262, 1417, 1535, 1605, 1843 |
| HpaII | CCGG | 3 cut(s) | 1078, 1456, 1709 |
| HphI | GGTGA | 2 cut(s) | 932, 1637 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 9 cut(s) | 117, 420, 443, 504, 556, 681, 745, 769, 1540 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 4 cut(s) | 415, 1238, 1684, 1739 |
| HpyCH4III | ACNGT | 3 cut(s) | 9, 903, 1424 |
| HpyCH4IV | ACGT | 2 cut(s) | 873, 998 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 625, 652, 865, 1444, 1474, 1766, 1806 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 1119, 1495, 1641, 1667, 1813, 1926 |
| HpySE526I | ACGT | 2 cut(s) | 873, 998 |
| Kpn2I | TCCGGA | 1 cut(s) | 1708 |
| Kzo9I | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| LmnI | GCTCC | 4 cut(s) | 424, 1444, 1465, 1599 |
| Lsp1109I | GCAGC | 5 cut(s) | 880, 1239, 1489, 1586, 1821 |
| MabI | ACCWGGT | 1 cut(s) | 1542 |
| MaeI | CTAG | 8 cut(s) | 603, 636, 663, 783, 860, 935, 1328, 1346 |
| MaeII | ACGT | 2 cut(s) | 873, 998 |
| MaeIII | GTNAC | 3 cut(s) | 245, 548, 1725 |
| MalI | GATC | 9 cut(s) | 125, 228, 484, 807, 848, 1149, 1302, 1740, 1883 |
| MboI | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| MboII | GAAGA | 9 cut(s) | 782, 809, 950, 1148, 1417, 1573, 1766, 1838, 1891 |
| MfeI | CAATTG | 1 cut(s) | 1193 |
| MflI | RGATCY | 2 cut(s) | 226, 846 |
| MlsI | TGGCCA | 1 cut(s) | 1191 |
| MluNI | TGGCCA | 1 cut(s) | 1191 |
| MlyI | GAGTC | 2 cut(s) | 743, 1614 |
| MmeI | TCCRAC | 2 cut(s) | 783, 1422 |
| Mox20I | TGGCCA | 1 cut(s) | 1191 |
| Mph1103I | ATGCAT | 1 cut(s) | 564 |
| MroI | TCCGGA | 1 cut(s) | 1708 |
| MscI | TGGCCA | 1 cut(s) | 1191 |
| MseI | TTAA | 5 cut(s) | 462, 755, 831, 1239, 1676 |
| MslI | CAYNNNNRTG | 2 cut(s) | 90, 876 |
| Msp20I | TGGCCA | 1 cut(s) | 1191 |
| MspI | CCGG | 3 cut(s) | 1078, 1456, 1709 |
| MspR9I | CCNGG | 1 cut(s) | 1544 |
| MunI | CAATTG | 1 cut(s) | 1193 |
| MvaI | CCWGG | 1 cut(s) | 1544 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 625, 652, 865, 1444, 1474, 1766, 1806 |
| NdeI | CATATG | 1 cut(s) | 409 |
| NdeII | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| NlaIV | GGNNCC | 6 cut(s) | 228, 426, 1386, 1454, 1601, 1934 |
| NmeAIII | GCCGAG | 1 cut(s) | 1628 |
| NsiI | ATGCAT | 1 cut(s) | 564 |
| NspI | RCATGY | 2 cut(s) | 210, 918 |
| NspV | TTCGAA | 1 cut(s) | 1889 |
| PaeI | GCATGC | 1 cut(s) | 918 |
| PagI | TCATGA | 3 cut(s) | 85, 334, 955 |
| PaqCI | CACCTGC | 2 cut(s) | 172, 1613 |
| PfeI | GAWTC | 7 cut(s) | 403, 448, 716, 1262, 1417, 1535, 1843 |
| PinAI | ACCGGT | 1 cut(s) | 1455 |
| PkrI | GCNGC | 5 cut(s) | 870, 1254, 1479, 1576, 1811 |
| PleI | GAGTC | 2 cut(s) | 742, 1613 |
| PpsI | GAGTC | 2 cut(s) | 742, 1613 |
| Ppu21I | YACGTR | 1 cut(s) | 999 |
| PshBI | ATTAAT | 2 cut(s) | 755, 1239 |
| Psp6I | CCWGG | 1 cut(s) | 1542 |
| PspGI | CCWGG | 1 cut(s) | 1542 |
| PspN4I | GGNNCC | 6 cut(s) | 228, 426, 1386, 1454, 1601, 1934 |
| PspPI | GGNCC | 1 cut(s) | 1453 |
| PsuI | RGATCY | 2 cut(s) | 226, 846 |
| RsaI | GTAC | 2 cut(s) | 997, 1001 |
| RsaNI | GTAC | 2 cut(s) | 996, 1000 |
| RseI | CAYNNNNRTG | 2 cut(s) | 90, 876 |
| SaqAI | TTAA | 5 cut(s) | 462, 755, 831, 1239, 1676 |
| SatI | GCNGC | 5 cut(s) | 869, 1253, 1478, 1575, 1810 |
| Sau3AI | GATC | 9 cut(s) | 123, 226, 482, 805, 846, 1147, 1300, 1738, 1881 |
| Sau96I | GGNCC | 1 cut(s) | 1453 |
| SchI | GAGTC | 2 cut(s) | 743, 1614 |
| ScrFI | CCNGG | 1 cut(s) | 1544 |
| SexAI | ACCWGGT | 1 cut(s) | 1542 |
| SfcI | CTRYAG | 1 cut(s) | 1423 |
| SfuI | TTCGAA | 1 cut(s) | 1889 |
| SinI | GGWCC | 1 cut(s) | 1453 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 90, 876 |
| SnaBI | TACGTA | 1 cut(s) | 999 |
| SphI | GCATGC | 1 cut(s) | 918 |
| SsiI | CCGC | 2 cut(s) | 918, 1463 |
| SspMI | CTAG | 8 cut(s) | 603, 636, 663, 783, 860, 935, 1328, 1346 |
| StyD4I | CCNGG | 1 cut(s) | 1542 |
| StyI | CCWWGG | 1 cut(s) | 927 |
| TaaI | ACNGT | 3 cut(s) | 9, 903, 1424 |
| TaiI | ACGT | 2 cut(s) | 876, 1001 |
| TaqI | TCGA | 2 cut(s) | 1618, 1889 |
| TfiI | GAWTC | 7 cut(s) | 403, 448, 716, 1262, 1417, 1535, 1843 |
| Tru1I | TTAA | 5 cut(s) | 462, 755, 831, 1239, 1676 |
| Tru9I | TTAA | 5 cut(s) | 462, 755, 831, 1239, 1676 |
| TscAI | CASTG | 4 cut(s) | 12, 70, 1427, 1881 |
| TseI | GCWGC | 5 cut(s) | 868, 1252, 1477, 1574, 1809 |
| TspGWI | ACGGA | 1 cut(s) | 1965 |
| TspRI | CASTG | 4 cut(s) | 12, 70, 1427, 1881 |
| VpaK11BI | GGWCC | 1 cut(s) | 1453 |
| VspI | ATTAAT | 2 cut(s) | 755, 1239 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| XbaI | TCTAGA | 2 cut(s) | 934, 1345 |
| XceI | RCATGY | 2 cut(s) | 210, 918 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1199 |
| XspI | CTAG | 8 cut(s) | 603, 636, 663, 783, 860, 935, 1328, 1346 |
| Zsp2I | ATGCAT | 1 cut(s) | 564 |