Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

20171060 .. 20171626

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAATCACTGCAGAGTTCACGGCCAGTTGGAGCTTGGGGACCGCTGTGTGGAGCTTATTGAGCAGCTAGATCCCTCCTGCTTAGATGAGCAGTCAAAGGCTGGCCTTATTCCTGTAAAAGAATCTGACCTGGTAAAGGAGAAAGAGAACAAAAAATTGGCAGCACAAAATCTTTTAGAAGTCAGGAGCCGAGTCCATGAATATCGAGCAGGTGATAAATCTCATCCTGAGAACGATGAGATTTATGCTCAACTTAGGGGTTTAAGGGAACAAATGAAGGAGGCTGGTTACATTCCGGAGACTAGATTTGTGCTACATGACATAGATCAGGAAGGCAAGGAAGATGCTCTGCTTGCCCATAGTGAGCGACTTGCTCTCGCTCATGGCCTCATCAGCAGCTCAGCTCGTTCAACTATTAGAGTAATCAAGAATCTTCGTGTTTGTGGTGATTGCCATAACGCGTTGAAGATCATTTCGAAAATTGTAGGCCGAAAACTCATCATGCGAGATGCTAAGAGGTTCCACCATTTCGAAGACGGCTTGTGCTCTTGCCGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

6.79

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Eplus_motif	PF20430	65 - 88	1.2e-06	E+ motif
DYW_deaminase	PF14432	96 - 188	3.6e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	200
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	49, 136
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	411, 466
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	5 cut(s)	34, 55, 67, 399, 404
AluI	AGCT	5 cut(s)	34, 55, 67, 399, 404
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	4 cut(s)	22, 103, 385, 487
ApeKI	GCWGC	3 cut(s)	64, 161, 396
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	224, 458
AsuII	TTCGAA	2 cut(s)	476, 531
AvaII	GGWCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	3 cut(s)	76, 173, 408
BceAI	ACGGC	2 cut(s)	37, 553
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	68, 303
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	65, 162, 397
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	3 cut(s)	66, 163, 398
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	41, 188, 521
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	334, 499
BpiI	GAAGAC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	400
Bpu14I	TTCGAA	2 cut(s)	476, 531
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 136
Bse1I	ACTGG	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	49, 136
BseMII	CTCAG	2 cut(s)	219, 414
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	76, 173, 408
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	4 cut(s)	24, 105, 387, 489
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	49, 136
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	24, 105, 387, 489
Bsp119I	TTCGAA	2 cut(s)	476, 531
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	70, 325, 468
Bsp1720I	GCTNAGC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	4 cut(s)	24, 105, 387, 489
BspCNI	CTCAG	2 cut(s)	220, 413
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	3 cut(s)	41, 188, 521
BspMAI	CTGCAG	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	2 cut(s)	476, 531
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	70, 325, 468
Bst2UI	CCWGG	1 cut(s)	131
BstBI	TTCGAA	2 cut(s)	476, 531
BstC8I	GCNNGC	2 cut(s)	103, 354
BstDEI	CTNAG	5 cut(s)	82, 228, 254, 400, 513
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	3 cut(s)	73, 328, 471
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	70, 325, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 353, 393
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	76, 173, 408
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	4 cut(s)	24, 105, 387, 489
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	103, 354
Cfr13I	GGNCC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	129
CviAII	CATG	4 cut(s)	197, 317, 383, 502
DdeI	CTNAG	5 cut(s)	82, 228, 254, 400, 513
DpnI	GATC	3 cut(s)	72, 327, 470
DpnII	GATC	3 cut(s)	70, 325, 468
EaeI	YGGCCR	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	200, 320, 386, 505
FaiI	YATR	8 cut(s)	198, 246, 318, 323, 360, 384, 456, 503
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	4 cut(s)	196, 316, 382, 501
Fnu4HI	GCNGC	3 cut(s)	65, 162, 397
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	65, 162, 397
FspBI	CTAG	2 cut(s)	68, 303
GluI	GCNGC	3 cut(s)	65, 162, 397
HaeIII	GGCC	4 cut(s)	24, 105, 387, 489
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	4 cut(s)	200, 320, 386, 505
HinfI	GANTC	4 cut(s)	4, 122, 192, 430
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	224, 458
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	5 cut(s)	184, 227, 296, 329, 427
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	271, 326
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 353, 393
HpyF3I	CTNAG	5 cut(s)	82, 228, 254, 400, 513
Hsp92II	CATG	4 cut(s)	200, 320, 386, 505
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	70, 325, 468
LmnI	GCTCC	3 cut(s)	31, 52, 186
Lsp1109I	GCAGC	3 cut(s)	76, 173, 408
LweI	GCATC	2 cut(s)	334, 499
MabI	ACCWGGT	1 cut(s)	129
MaeI	CTAG	2 cut(s)	68, 303
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	72, 327, 470
MboI	GATC	3 cut(s)	70, 325, 468
MboII	GAAGA	4 cut(s)	353, 425, 478, 545
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	2 cut(s)	155, 480
MluI	ACGCGT	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	4 cut(s)	85, 274, 398, 510
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	61, 353, 393
NdeII	GATC	3 cut(s)	70, 325, 468
NlaIII	CATG	4 cut(s)	200, 320, 386, 505
NlaIV	GGNNCC	3 cut(s)	41, 188, 521
NmeAIII	GCCGAG	1 cut(s)	215
NspV	TTCGAA	2 cut(s)	476, 531
PaqCI	CACCTGC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	4, 122, 430
PkrI	GCNGC	3 cut(s)	66, 163, 398
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	41, 188, 521
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	65, 162, 397
Sau3AI	GATC	3 cut(s)	70, 325, 468
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	8 cut(s)	36, 57, 69, 132, 214, 401, 406, 521
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	2 cut(s)	334, 499
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	2 cut(s)	476, 531
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	155, 480
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	68, 303
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	3 cut(s)	205, 476, 531
TasI	AATT	2 cut(s)	155, 480
TfiI	GAWTC	3 cut(s)	4, 122, 430
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	3 cut(s)	64, 161, 396
TspDTI	ATGAA	3 cut(s)	17, 213, 290
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	2 cut(s)	68, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.