Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

20169382 .. 20170998

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGTGGAAGCGAGTGGTATCAACCCCATCAGCTCAGCTCCAAACCCTTGCCTCAACCTCAGGCTCACATAGATCCTCATGTCTCAGACACATCTTTCAACTCCTCATCTTCTCACCATCTTCCTCTTCAATGTTGCCATATCAGCAATCCCGTGCTCTCTCCTCCACCCACGCCACCTTTACTTCCTATTCCAGTGCATCTGCATTTGCTATGGGTCATGAACATGAGGAAGTTGAGGCAGAGCATCAGAGTAGGATCAATACATATAATCAGAGTGGAAGTGATAGTGGGTATTCTGGTCAAAATAGTTGGCAGTTGCAGCAGAAACTAAATGGGTCTTGTGCGGATGGTTCGCGGGATCGCAAGCAGAGCTCAAATCAGTACAATCAGAGTTACAATGGGACTTTCTGGAGAGGCACAGGCAATGAATTTCTAAATGACCCAGTTCAACGAAATGGAAATTTCCGAGGGTATTACGGTTATGAAAATGGAGGGTTGCAAAACACCCCAAACCTGAACGGGAAACAATTAGGAAATGGAAATATACAGAATCCATATGTGTCTCGGCAAGAGGGATCAATAGAAGTTAGACAGAACCCCGATGGTTTTAATTCACAAGGAAATTCAGGGTCTCAGGGAAACCCAAATCAGAATTCTATGCAAAGTTATGCACAGTATCAGCAAAACACCAGTGGTCATCAGCAGAACCCTAATTATGGACAATATCAACAGAATTCTAGTTATGCATATGGACAATATCAGCAACAACCTAGTTATGCGCAATACCAGCAACAGCCTAGTATTGGGCAATACCAGCAAAGCCCCCGCGTTGGACAATATCAGACAAATTCAGATGCTTTTCAAAATATGATAGTGGATTCTCACGTGGGAAGTGAGTCAAAATCTGAAGGGCAATTGATTGAGGCTTCAGAAAATAGCCCGTCTAGTTCTAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAGGCTGTGGAGATCTTGGGACTGCTAGAGAAGCAGCATGTTCATGTGGATTTGCATCTCTATTTACAGTTAATGCAGGCATGCGGTGAGGCTAAGGCTCTACAAGAAGCAAAAATTGTTCATGACAACATTACAAGATTATTGCCTCCTCTGAACGTGAGTACGTACAACAGAATCTTGGAGATGTATTCTAAATGTGGTTCTATGGACAACGCATTTTTGGTTTTCAACAAGATGCCTAACCGGAATTTGACATCATGGGACATTATGATAACGTGGCTTGCTAAGAATGGTCTTGGGGAAGATGCCATTGATCTATTTACCCAATTCAAAAAAGCAGGCTTGAAACCTGATGGCCAATTGTTTAATGGGGTTTTATACGCTTGCAGTGTAGTGGGAGATGTTAATGAAGGATTGCTGCATTTTGAATCAATGAGCAAAGATTATGGTATTGTCCCAAATATGGATCGATTATGTGAGTGCGGTAGCTATGCTAGGAAGTACGGGCTATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

505

Amino Acids

56.19

Weight (kDa)

6.12

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	384 - 416	5e-06	PPR repeat family
PPR_2	PF13041	415 - 457	4.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	780
AccII	CGCG	2 cut(s)	355, 828
AciI	CCGC	5 cut(s)	344, 355, 826, 1080, 1479
AclWI	GGATC	6 cut(s)	66, 263, 366, 583, 975, 1470
AcoI	YGGCCR	1 cut(s)	1351
AcsI	RAATTY	7 cut(s)	428, 460, 622, 652, 733, 847, 1243
AcuI	CTGAAG	2 cut(s)	912, 927
AcvI	CACGTG	1 cut(s)	886
AfaI	GTAC	4 cut(s)	383, 1159, 1163, 1499
AfiI	CCNNNNNNNGG	4 cut(s)	716, 803, 830, 1459
AgsI	TTSAA	9 cut(s)	98, 129, 449, 863, 959, 1225, 1327, 1342, 1424
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	4 cut(s)	32, 37, 372, 1485
AluI	AGCT	4 cut(s)	32, 37, 372, 1485
Alw21I	GWGCWC	2 cut(s)	157, 374
Alw26I	GTCTC	3 cut(s)	86, 567, 636
AlwI	GGATC	6 cut(s)	66, 263, 366, 583, 975, 1470
AoxI	GGCC	1 cut(s)	1351
ApeKI	GCWGC	3 cut(s)	319, 1030, 1414
ApoI	RAATTY	7 cut(s)	428, 460, 622, 652, 733, 847, 1243
AspLEI	GCGC	1 cut(s)	781
AsuHPI	GGTGA	2 cut(s)	105, 1094
AxyI	CCTNAGG	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	1353
BanII	GRGCYC	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	886
Bbv12I	GWGCWC	2 cut(s)	157, 374
BbvI	GCAGC	3 cut(s)	331, 1042, 1401
BccI	CCATC	5 cut(s)	34, 124, 341, 596, 1343
BcoDI	GTCTC	3 cut(s)	86, 567, 636
BfaI	CTAG	7 cut(s)	738, 771, 798, 945, 951, 1022, 1491
BglII	AGATCT	1 cut(s)	1008
BisI	GCNGC	3 cut(s)	320, 1031, 1415
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	3 cut(s)	321, 1032, 1416
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	6 cut(s)	206, 253, 844, 1060, 1221, 1291
BmuI	ACTGGG	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	1465
BsaAI	YACGTR	2 cut(s)	886, 1161
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	1239
Bsc4I	CCNNNNNNNGG	4 cut(s)	716, 803, 830, 1459
Bse1I	ACTGG	3 cut(s)	192, 443, 690
Bse21I	CCTNAGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	1050
BseCI	ATCGAT	1 cut(s)	1465
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	1050
BseLI	CCNNNNNNNGG	4 cut(s)	716, 803, 830, 1459
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	47, 72, 97, 647
BseNI	ACTGG	3 cut(s)	192, 443, 690
BseRI	GAGGAG	3 cut(s)	92, 151, 1134
BseXI	GCAGC	3 cut(s)	331, 1042, 1401
Bsh1236I	CGCG	2 cut(s)	355, 828
BshFI	GGCC	1 cut(s)	1353
BshVI	ATCGAT	1 cut(s)	1465
BsiHKAI	GWGCWC	2 cut(s)	157, 374
BsiSI	CCGG	1 cut(s)	1240
BslFI	GGGAC	4 cut(s)	415, 1029, 1271, 1436
BslI	CCNNNNNNNGG	4 cut(s)	716, 803, 830, 1459
BsmAI	GTCTC	3 cut(s)	86, 567, 636
BsmFI	GGGAC	4 cut(s)	415, 1029, 1271, 1436
BsnI	GGCC	1 cut(s)	1353
Bso31I	GGTCTC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	157, 374
Bsp143I	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	5 cut(s)	344, 355, 826, 1080, 1479
BspANI	GGCC	1 cut(s)	1353
BspCNI	CTCAG	4 cut(s)	46, 71, 96, 646
BspDI	ATCGAT	1 cut(s)	1465
BspFNI	CGCG	2 cut(s)	355, 828
BspHI	TCATGA	2 cut(s)	217, 1117
BspPI	GGATC	6 cut(s)	66, 263, 366, 583, 975, 1470
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	192, 443, 690
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
Bst4CI	ACNGT	3 cut(s)	479, 675, 1065
Bst6I	CTCTTC	2 cut(s)	130, 954
BstBAI	YACGTR	2 cut(s)	886, 1161
BstC8I	GCNNGC	6 cut(s)	365, 1074, 1078, 1278, 1336, 1381
BstDEI	CTNAG	6 cut(s)	33, 58, 83, 633, 1089, 1281
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	355, 828
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	8 cut(s)	74, 258, 361, 578, 970, 1011, 1312, 1465
BstMAI	GTCTC	3 cut(s)	86, 567, 636
BstMBI	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 319, 369, 787, 814, 1027
BstNSI	RCATGY	2 cut(s)	1037, 1080
BstSNI	TACGTA	1 cut(s)	1161
BstUI	CGCG	2 cut(s)	355, 828
BstV1I	GCAGC	3 cut(s)	331, 1042, 1401
BstX2I	RGATCY	2 cut(s)	71, 1008
BstYI	RGATCY	2 cut(s)	71, 1008
Bsu15I	ATCGAT	1 cut(s)	1465
Bsu36I	CCTNAGG	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	1353
BsuTUI	ATCGAT	1 cut(s)	1465
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	1390
BtsIMutI	CAGTG	3 cut(s)	199, 697, 1390
Cac8I	GCNNGC	6 cut(s)	365, 1074, 1078, 1278, 1336, 1381
CciI	TCATGA	2 cut(s)	217, 1117
CfoI	GCGC	1 cut(s)	781
ClaI	ATCGAT	1 cut(s)	1465
Csp6I	GTAC	4 cut(s)	382, 1158, 1162, 1498
CviAII	CATG	8 cut(s)	78, 218, 224, 1034, 1040, 1077, 1118, 1254
CviQI	GTAC	4 cut(s)	382, 1158, 1162, 1498
DdeI	CTNAG	6 cut(s)	33, 58, 83, 633, 1089, 1281
DpnI	GATC	8 cut(s)	73, 257, 360, 577, 969, 1010, 1311, 1464
DpnII	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
EaeI	YGGCCR	1 cut(s)	1351
Eam1104I	CTCTTC	2 cut(s)	130, 954
EarI	CTCTTC	2 cut(s)	130, 954
Ecl136II	GAGCTC	1 cut(s)	372
Eco105I	TACGTA	1 cut(s)	1161
Eco24I	GRGCYC	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	912, 927
Eco72I	CACGTG	1 cut(s)	886
Eco81I	CCTNAGG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	652, 733
EcoT22I	ATGCAT	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	374
FaeI	CATG	8 cut(s)	81, 221, 227, 1037, 1043, 1080, 1121, 1257
FaqI	GGGAC	4 cut(s)	415, 1029, 1271, 1436
FatI	CATG	8 cut(s)	77, 217, 223, 1033, 1039, 1076, 1117, 1253
FauI	CCCGC	2 cut(s)	348, 833
FauNDI	CATATG	2 cut(s)	556, 748
Fnu4HI	GCNGC	3 cut(s)	320, 1031, 1415
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	320, 1031, 1415
FspBI	CTAG	7 cut(s)	738, 771, 798, 945, 951, 1022, 1491
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	3 cut(s)	320, 1031, 1415
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	1353
HapII	CCGG	1 cut(s)	1240
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	8 cut(s)	81, 221, 227, 1037, 1043, 1080, 1121, 1257
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HinfI	GANTC	5 cut(s)	550, 878, 896, 1170, 1424
HpaII	CCGG	1 cut(s)	1240
HphI	GGTGA	2 cut(s)	105, 1094
Hpy188III	TCNNGA	5 cut(s)	218, 409, 956, 1118, 1509
HpyAV	CCTTC	2 cut(s)	902, 1400
HpyCH4III	ACNGT	3 cut(s)	479, 675, 1065
HpyCH4IV	ACGT	4 cut(s)	885, 1152, 1160, 1271
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 319, 369, 787, 814, 1027
HpyF3I	CTNAG	6 cut(s)	33, 58, 83, 633, 1089, 1281
HpySE526I	ACGT	4 cut(s)	885, 1152, 1160, 1271
Hsp92II	CATG	8 cut(s)	81, 221, 227, 1037, 1043, 1080, 1121, 1257
HspAI	GCGC	1 cut(s)	779
Kzo9I	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	331, 1042, 1401
LweI	GCATC	6 cut(s)	206, 253, 844, 1060, 1221, 1291
MaeI	CTAG	7 cut(s)	738, 771, 798, 945, 951, 1022, 1491
MaeII	ACGT	4 cut(s)	885, 1152, 1160, 1271
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	8 cut(s)	73, 257, 360, 577, 969, 1010, 1311, 1464
MboI	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
MboII	GAAGA	5 cut(s)	100, 111, 117, 971, 1310
MfeI	CAATTG	2 cut(s)	914, 1355
MflI	RGATCY	2 cut(s)	71, 1008
MhlI	GDGCHC	2 cut(s)	157, 374
MlsI	TGGCCA	1 cut(s)	1353
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	2 cut(s)	811, 945
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	1353
MseI	TTAA	5 cut(s)	609, 993, 1067, 1362, 1401
MslI	CAYNNNNRTG	2 cut(s)	222, 1038
Msp20I	TGGCCA	1 cut(s)	1353
MspI	CCGG	1 cut(s)	1240
MunI	CAATTG	2 cut(s)	914, 1355
MvnI	CGCG	2 cut(s)	355, 828
MwoI	GCNNNNNNNGC	6 cut(s)	142, 319, 369, 787, 814, 1027
NdeI	CATATG	2 cut(s)	556, 748
NdeII	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
NlaIII	CATG	8 cut(s)	81, 221, 227, 1037, 1043, 1080, 1121, 1257
NmeAIII	GCCGAG	1 cut(s)	544
NsbI	TGCGCA	1 cut(s)	780
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	2 cut(s)	1037, 1080
PaeI	GCATGC	1 cut(s)	1080
PagI	TCATGA	2 cut(s)	217, 1117
PfeI	GAWTC	4 cut(s)	550, 878, 1170, 1424
PkrI	GCNGC	3 cut(s)	321, 1032, 1416
PleI	GAGTC	1 cut(s)	904
PmaCI	CACGTG	1 cut(s)	886
PmlI	CACGTG	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	904
Ppu21I	YACGTR	2 cut(s)	886, 1161
Psp124BI	GAGCTC	1 cut(s)	374
PspCI	CACGTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	71, 1008
RsaI	GTAC	4 cut(s)	383, 1159, 1163, 1499
RsaNI	GTAC	4 cut(s)	382, 1158, 1162, 1498
RseI	CAYNNNNRTG	2 cut(s)	222, 1038
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	5 cut(s)	609, 993, 1067, 1362, 1401
SatI	GCNGC	3 cut(s)	320, 1031, 1415
Sau3AI	GATC	8 cut(s)	71, 255, 358, 575, 967, 1008, 1309, 1462
SchI	GAGTC	1 cut(s)	905
SduI	GDGCHC	2 cut(s)	157, 374
SfaNI	GCATC	6 cut(s)	206, 253, 844, 1060, 1221, 1291
SmiMI	CAYNNNNRTG	2 cut(s)	222, 1038
SnaBI	TACGTA	1 cut(s)	1161
SphI	GCATGC	1 cut(s)	1080
SsiI	CCGC	5 cut(s)	344, 355, 826, 1080, 1479
SspMI	CTAG	7 cut(s)	738, 771, 798, 945, 951, 1022, 1491
SstI	GAGCTC	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	479, 675, 1065
TaiI	ACGT	4 cut(s)	888, 1155, 1163, 1274
TaqI	TCGA	1 cut(s)	1465
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	4 cut(s)	550, 878, 1170, 1424
Tru1I	TTAA	5 cut(s)	609, 993, 1067, 1362, 1401
Tru9I	TTAA	5 cut(s)	609, 993, 1067, 1362, 1401
TscAI	CASTG	3 cut(s)	199, 697, 1390
TseI	GCWGC	3 cut(s)	319, 1030, 1414
TspDTI	ATGAA	6 cut(s)	234, 441, 498, 1028, 1106, 1419
TspRI	CASTG	3 cut(s)	199, 697, 1390
XapI	RAATTY	7 cut(s)	428, 460, 622, 652, 733, 847, 1243
XceI	RCATGY	2 cut(s)	1037, 1080
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1361
XspI	CTAG	7 cut(s)	738, 771, 798, 945, 951, 1022, 1491
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.