Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

37700292 .. 37701017

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTGCAACTCTTATGGCAATACCAGCAAAGCCCCCATGCTGGACAATATCCGACAAATTCAGATGCTTTTCAAAATATGATAGTGGATTCTCACGCAGGAAGTGAGTCAAAATCTGAAGGACAATTCATTGAGGCTTCGGAAAATAGCCCATCTAGTTCCAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAAGCTGTGGATATCTTGGGACAGCTAGAGATGCAGCATGTTCATGTGGATTTGCATCTCTATTTACAGTTAATGCAGGCATGCGGTGAGGCTAAGGCTTTAGAAGAAGCAAAAGTTGTTCATGACAACATTACCAGATTATTGCCTACTTTGAATGTGAGTACGTACAACAAAATCTTGGAGATGTATTCTAAATGTGGTTCTATGGACAACGCATTTTTGGTTTTCAACAAGATGCCAAATCGGAATTTGACATCGTGGGACATTATGATAACATGGTTTGCTATGAATGGTCTTGGGGAAGATGCCATTGATCTATTTACCCAATTCAAGAAAGCAGGCTTGAAACCTGATGGCCAATTGTTCATTGGGGTTTTATACGCTTGTAGTGTCGTGGGAGATATTAATGAGGGATTGCTGCATTTTGAATCGATGAGCAATGATTATGCTATTGTCCCAAATATGGATCGATTATGTGAGTGTAATAGATATGTTAGGAAGTACGGGCCATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

4.96

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 153	1.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	186, 681
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	58, 454
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	370, 374, 710
AfiI	CCNNNNNNNGG	2 cut(s)	41, 670
AgsI	TTSAA	7 cut(s)	74, 170, 361, 436, 538, 553, 635
AluBI	AGCT	2 cut(s)	212, 232
AluI	AGCT	2 cut(s)	212, 232
AlwI	GGATC	2 cut(s)	186, 681
AoxI	GGCC	2 cut(s)	562, 713
ApeKI	GCWGC	2 cut(s)	241, 625
ApoI	RAATTY	2 cut(s)	58, 454
AseI	ATTAAT	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	253, 612
BccI	CCATC	3 cut(s)	160, 554, 724
BfaI	CTAG	2 cut(s)	156, 233
BisI	GCNGC	2 cut(s)	242, 626
BlsI	GCNGC	2 cut(s)	243, 627
BmgT120I	GGNCC	1 cut(s)	713
BmsI	GCATC	5 cut(s)	55, 228, 271, 432, 502
Bpu10I	CCTNAGC	1 cut(s)	300
Bsa29I	ATCGAT	2 cut(s)	638, 676
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 670
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	261
BseCI	ATCGAT	2 cut(s)	638, 676
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	41, 670
BseMI	GCAATG	1 cut(s)	652
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	253, 612
BshFI	GGCC	2 cut(s)	564, 715
BshVI	ATCGAT	2 cut(s)	638, 676
BslFI	GGGAC	3 cut(s)	240, 482, 647
BslI	CCNNNNNNNGG	2 cut(s)	41, 670
BsmFI	GGGAC	3 cut(s)	240, 482, 647
BsnI	GGCC	2 cut(s)	564, 715
Bsp143I	GATC	3 cut(s)	178, 520, 673
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	564, 715
BspDI	ATCGAT	2 cut(s)	638, 676
BspHI	TCATGA	1 cut(s)	328
BspPI	GGATC	2 cut(s)	186, 681
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	178, 520, 673
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	285, 289, 547
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	181, 523, 676
BstMBI	GATC	3 cut(s)	178, 520, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 238
BstNSI	RCATGY	2 cut(s)	248, 291
BstSNI	TACGTA	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	253, 612
Bsu15I	ATCGAT	2 cut(s)	638, 676
BsuRI	GGCC	2 cut(s)	564, 715
BsuTUI	ATCGAT	2 cut(s)	638, 676
Cac8I	GCNNGC	3 cut(s)	285, 289, 547
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	2 cut(s)	638, 676
Csp6I	GTAC	3 cut(s)	369, 373, 709
CviAII	CATG	6 cut(s)	38, 245, 251, 288, 329, 483
CviQI	GTAC	3 cut(s)	369, 373, 709
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	180, 522, 675
DpnII	GATC	3 cut(s)	178, 520, 673
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
FaqI	GGGAC	3 cut(s)	240, 482, 647
FatI	CATG	6 cut(s)	37, 244, 250, 287, 328, 482
Fnu4HI	GCNGC	2 cut(s)	242, 626
Fsp4HI	GCNGC	2 cut(s)	242, 626
FspBI	CTAG	2 cut(s)	156, 233
GluI	GCNGC	2 cut(s)	242, 626
HaeIII	GGCC	2 cut(s)	564, 715
Hin1II	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
HinfI	GANTC	3 cut(s)	89, 107, 635
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	5 cut(s)	54, 64, 118, 142, 453
Hpy188III	TCNNGA	4 cut(s)	167, 329, 538, 720
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	7, 189, 241, 262, 283, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 238
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
Kzo9I	GATC	3 cut(s)	178, 520, 673
LpnPI	CCDG	9 cut(s)	27, 38, 84, 175, 269, 355, 531, 570, 705
Lsp1109I	GCAGC	2 cut(s)	253, 612
LweI	GCATC	5 cut(s)	55, 228, 271, 432, 502
MaeI	CTAG	2 cut(s)	156, 233
MaeII	ACGT	1 cut(s)	371
MalI	GATC	3 cut(s)	180, 522, 675
MboI	GATC	3 cut(s)	178, 520, 673
MboII	GAAGA	3 cut(s)	182, 323, 521
MfeI	CAATTG	1 cut(s)	566
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	5 cut(s)	58, 125, 454, 533, 566
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	77, 156
MnlI	CCTC	4 cut(s)	127, 187, 289, 610
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	3 cut(s)	204, 278, 612
MslI	CAYNNNNRTG	2 cut(s)	249, 721
Msp20I	TGGCCA	1 cut(s)	564
MunI	CAATTG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	25, 238
NdeII	GATC	3 cut(s)	178, 520, 673
NlaIII	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
NspI	RCATGY	2 cut(s)	248, 291
PaeI	GCATGC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	89, 635
PkrI	GCNGC	2 cut(s)	243, 627
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	713
RsaI	GTAC	3 cut(s)	370, 374, 710
RsaNI	GTAC	3 cut(s)	369, 373, 709
RseI	CAYNNNNRTG	2 cut(s)	249, 721
SaqAI	TTAA	3 cut(s)	204, 278, 612
SatI	GCNGC	2 cut(s)	242, 626
Sau3AI	GATC	3 cut(s)	178, 520, 673
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	1 cut(s)	116
SetI	ASST	4 cut(s)	214, 234, 374, 559
SfaNI	GCATC	5 cut(s)	55, 228, 271, 432, 502
SmiMI	CAYNNNNRTG	2 cut(s)	249, 721
SnaBI	TACGTA	1 cut(s)	372
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	5 cut(s)	58, 125, 454, 533, 566
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	156, 233
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	638, 676
TasI	AATT	5 cut(s)	58, 125, 454, 533, 566
TfiI	GAWTC	2 cut(s)	89, 635
Tru1I	TTAA	3 cut(s)	204, 278, 612
Tru9I	TTAA	3 cut(s)	204, 278, 612
TseI	GCWGC	2 cut(s)	241, 625
TspDTI	ATGAA	5 cut(s)	118, 239, 317, 509, 562
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	2 cut(s)	58, 454
XceI	RCATGY	2 cut(s)	248, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XspI	CTAG	2 cut(s)	156, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.