Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

37730612 .. 37731964

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTTGCAACTCTTATGGCAATACCAGCAAAGCCCCCATGCTGGACAATATCCGACAAATTCAGATGCTTTTCAAAATATGATAGTGGATTCTCACGCAGGAAGTGAGTCAAAATCTGAAGGACAATTCATTGAGGCTTCGGAAAATAGCCCATCTAGTTCCAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAAGCTGTGGATATCTTGGGACAGCTAGAGATGCAGCATGTTCATGTGGATTTGCATCTCTATTTACAGTTAATGCAGGCATGCGGTGAGGCTAAGGCTTTAGAAGAAGCAAAAGTTGTTCATGACAACATTACCAGATTATTGCCTACTTTGAATGTGAGTACGTACAACAAAATCTTGGAGATGTATTCTAAATGTGGTTCTATGGACAACGCATTTTTGGTTTTCAACAAGATGCCAAATCGGAATTTGACATCGTGGGACATTATGATAACATGGTTTGCTAAGAATGGTCTTGGGGAAGATGCCATTGATCTATTTACCCAATTCAAGAAAGCAGGCTTGAAACCTGATGGCCAATTGTTTATTGGGGTTTTATACGCTTGTAGTGTCGTGGAAGATATTAACAAGGGATTGCTGCATTTTGAATCGATGGGCAAAGATTATGCTATTGTCCCAAATATGGATCATTATGTGAGTGTAATAGATATGCTAGGAAGTACGGGCTATCTGGATGAAGCTTTGGAATTCATTGAAAAGATGCCATTGGAACCTAATGTCGATGTTTGGAAGACCTTGATGAATCACTGTAGAGTTCATGGGCAGTTGGAGCTTGGGGACCAGTGTGCGGAGCTTATTGAGCAGCTAGATCCCTCCTGCTTAGATGAGCAATCAAAGGCTGGCCTTATTCCTGTAAAAGAATCTGACCTGGTAAAGGAGAAAGAGAAGAAAAAAATAGCAGCACAAAATCTTTTAGAAGTCAGGAGACGAGTCCATGAATATCGAGCAGGTGATAAATCGCATCCTGAGAACGATGAAATTTATGCTCAACTCAGGGGTTTAAGGGAACAGATGAAGGAGGCCGGCTACATTCCGGAGACTAGATTTGTGTTACATGACATAGATCAGGAAGGCAAGGAAGATGCTCTACTTGCCCATAGCGAGAGACTTGCTCTTGCTCATGGCCTCATCAGCAGCTCAGCACGTTCAACTATTAGGGTTATCAAGAATCTTCGTGTTTGTGGCGATTGCCATAACGCACTGAAGATCATTTCGAAAATTGTAGGCAGAGAACTCATCATGCGAGATGCTAAGAGGTTCCACCATTTCAAAGACGGATTGTGTTCTTGCCGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

451

Amino Acids

51.03

Weight (kDa)

5.54

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 153	3.8e-06	PPR repeat family
PPR_2	PF13041	152 - 187	8.5e-06	PPR repeat family
Eplus_motif	PF20430	327 - 350	3.8e-06	E+ motif
DYW_deaminase	PF14432	358 - 450	7.3e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	986
Acc36I	ACCTGC	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	1081
AciI	CCGC	2 cut(s)	291, 836
AclWI	GGATC	3 cut(s)	186, 681, 851
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	4 cut(s)	58, 454, 734, 1026
AcuI	CTGAAG	2 cut(s)	138, 1271
AfaI	GTAC	3 cut(s)	370, 374, 709
AfiI	CCNNNNNNNGG	4 cut(s)	41, 670, 835, 922
AjnI	CCWGG	1 cut(s)	915
AluBI	AGCT	7 cut(s)	212, 232, 728, 820, 841, 853, 1185
AluI	AGCT	7 cut(s)	212, 232, 728, 820, 841, 853, 1185
Alw26I	GTCTC	3 cut(s)	967, 1079, 1147
AlwI	GGATC	3 cut(s)	186, 681, 851
Aor13HI	TCCGGA	1 cut(s)	1081
AoxI	GGCC	4 cut(s)	562, 889, 1068, 1171
ApeKI	GCWGC	5 cut(s)	241, 625, 850, 947, 1182
ApoI	RAATTY	4 cut(s)	58, 454, 734, 1026
AspS9I	GGNCC	1 cut(s)	826
AsuHPI	GGTGA	2 cut(s)	305, 1010
AsuII	TTCGAA	1 cut(s)	1262
AvaII	GGWCC	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	564
BarI	GAAGNNNNNNTAC	2 cut(s)	1119, 1151
BbsI	GAAGAC	1 cut(s)	785
BbvI	GCAGC	5 cut(s)	253, 612, 862, 959, 1194
BccI	CCATC	3 cut(s)	160, 554, 634
BcgI	CGANNNNNNTGC	2 cut(s)	1139, 1173
BciT130I	CCWGG	1 cut(s)	917
BcoDI	GTCTC	3 cut(s)	967, 1079, 1147
BfaI	CTAG	5 cut(s)	156, 233, 701, 854, 1089
BfmI	CTRYAG	1 cut(s)	796
BfuAI	ACCTGC	1 cut(s)	986
BisI	GCNGC	5 cut(s)	242, 626, 851, 948, 1183
BlpI	GCTNAGC	1 cut(s)	1186
BlsI	GCNGC	5 cut(s)	243, 627, 852, 949, 1184
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	826
BmiI	GGNNCC	3 cut(s)	759, 827, 1307
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	9 cut(s)	55, 228, 271, 432, 502, 738, 1018, 1120, 1285
BpiI	GAAGAC	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	1144, 1176
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	1186
Bpu14I	TTCGAA	1 cut(s)	1262
Bsa29I	ATCGAT	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	1081
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 670, 835, 922
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	2 cut(s)	162, 829
Bse8I	GATNNNNATC	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	1081
BseBI	CCWGG	1 cut(s)	917
BseCI	ATCGAT	1 cut(s)	638
BseGI	GGATG	2 cut(s)	727, 1009
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	4 cut(s)	41, 670, 835, 922
BseMII	CTCAG	3 cut(s)	1005, 1054, 1200
BseNI	ACTGG	2 cut(s)	162, 829
BseXI	GCAGC	5 cut(s)	253, 612, 862, 959, 1194
BshFI	GGCC	4 cut(s)	564, 891, 1070, 1173
BshVI	ATCGAT	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	1071, 1082
BslFI	GGGAC	4 cut(s)	240, 482, 647, 839
BslI	CCNNNNNNNGG	4 cut(s)	41, 670, 835, 922
BsmAI	GTCTC	3 cut(s)	967, 1079, 1147
BsmBI	CGTCTC	1 cut(s)	967
BsmFI	GGGAC	4 cut(s)	240, 482, 647, 839
BsnI	GGCC	4 cut(s)	564, 891, 1070, 1173
Bsp119I	TTCGAA	1 cut(s)	1262
Bsp13I	TCCGGA	1 cut(s)	1081
Bsp143I	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
Bsp1720I	GCTNAGC	1 cut(s)	1186
BspACI	CCGC	2 cut(s)	291, 836
BspANI	GGCC	4 cut(s)	564, 891, 1070, 1173
BspCNI	CTCAG	3 cut(s)	1006, 1053, 1199
BspDI	ATCGAT	1 cut(s)	638
BspEI	TCCGGA	1 cut(s)	1081
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	759, 827, 1307
BspMI	ACCTGC	1 cut(s)	986
BspPI	GGATC	3 cut(s)	186, 681, 851
BspT104I	TTCGAA	1 cut(s)	1262
BsrFI	RCCGGY	1 cut(s)	1070
BsrI	ACTGG	2 cut(s)	162, 829
BssAI	RCCGGY	1 cut(s)	1070
BssMI	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	2 cut(s)	276, 797
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	1262
BstC8I	GCNNGC	5 cut(s)	285, 289, 547, 889, 1072
BstDEI	CTNAG	7 cut(s)	300, 492, 868, 1014, 1040, 1186, 1299
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	2 cut(s)	727, 1009
BstKTI	GATC	6 cut(s)	181, 523, 676, 859, 1114, 1257
BstMAI	GTCTC	3 cut(s)	967, 1079, 1147
BstMBI	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 238, 817, 847, 1139, 1179
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	2 cut(s)	248, 291
BstSCI	CCNGG	1 cut(s)	915
BstSFI	CTRYAG	1 cut(s)	796
BstSNI	TACGTA	1 cut(s)	372
BstV1I	GCAGC	5 cut(s)	253, 612, 862, 959, 1194
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	638
BsuRI	GGCC	4 cut(s)	564, 891, 1070, 1173
BsuTUI	ATCGAT	1 cut(s)	638
BtsCI	GGATG	2 cut(s)	727, 1009
BtsIMutI	CAGTG	3 cut(s)	793, 836, 1247
BveI	ACCTGC	1 cut(s)	986
Cac8I	GCNNGC	5 cut(s)	285, 289, 547, 889, 1072
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	1 cut(s)	826
ClaI	ATCGAT	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	915
Csp6I	GTAC	3 cut(s)	369, 373, 708
CviQI	GTAC	3 cut(s)	369, 373, 708
DdeI	CTNAG	7 cut(s)	300, 492, 868, 1014, 1040, 1186, 1299
DpnI	GATC	6 cut(s)	180, 522, 675, 858, 1113, 1256
DpnII	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	138, 1271
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	967
FaqI	GGGAC	4 cut(s)	240, 482, 647, 839
Fnu4HI	GCNGC	5 cut(s)	242, 626, 851, 948, 1183
FokI	GGATG	2 cut(s)	734, 996
Fsp4HI	GCNGC	5 cut(s)	242, 626, 851, 948, 1183
FspBI	CTAG	5 cut(s)	156, 233, 701, 854, 1089
GluI	GCNGC	5 cut(s)	242, 626, 851, 948, 1183
HaeIII	GGCC	4 cut(s)	564, 891, 1070, 1173
HapII	CCGG	2 cut(s)	1071, 1082
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	7 cut(s)	89, 107, 635, 790, 908, 978, 1216
HpaII	CCGG	2 cut(s)	1071, 1082
HphI	GGTGA	2 cut(s)	305, 1010
Hpy188I	TCNGA	6 cut(s)	54, 64, 118, 142, 453, 913
Hpy188III	TCNNGA	9 cut(s)	167, 329, 538, 719, 970, 1013, 1082, 1115, 1213
HpyAV	CCTTC	3 cut(s)	113, 1057, 1112
HpyCH4III	ACNGT	2 cut(s)	276, 797
HpyCH4IV	ACGT	2 cut(s)	371, 1192
HpyCH4V	TGCA	6 cut(s)	7, 189, 241, 262, 283, 628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 238, 817, 847, 1139, 1179
HpyF3I	CTNAG	7 cut(s)	300, 492, 868, 1014, 1040, 1186, 1299
HpySE526I	ACGT	2 cut(s)	371, 1192
Kpn2I	TCCGGA	1 cut(s)	1081
KroI	GCCGGC	1 cut(s)	1070
KroNI	GCCGGC	1 cut(s)	1072
Kzo9I	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
LmnI	GCTCC	2 cut(s)	817, 838
Lsp1109I	GCAGC	5 cut(s)	253, 612, 862, 959, 1194
LweI	GCATC	9 cut(s)	55, 228, 271, 432, 502, 738, 1018, 1120, 1285
MabI	ACCWGGT	1 cut(s)	915
MaeI	CTAG	5 cut(s)	156, 233, 701, 854, 1089
MaeII	ACGT	2 cut(s)	371, 1192
MaeIII	GTNAC	1 cut(s)	1098
MalI	GATC	6 cut(s)	180, 522, 675, 858, 1113, 1256
MboI	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
MboII	GAAGA	9 cut(s)	182, 323, 521, 617, 790, 946, 1139, 1211, 1264
MfeI	CAATTG	1 cut(s)	566
MflI	RGATCY	1 cut(s)	856
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	8 cut(s)	58, 125, 454, 533, 566, 734, 1026, 1266
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	2 cut(s)	116, 987
MmeI	TCCRAC	3 cut(s)	77, 156, 795
MnlI	CCTC	7 cut(s)	127, 187, 289, 871, 1060, 1184, 1296
Mox20I	TGGCCA	1 cut(s)	564
MroI	TCCGGA	1 cut(s)	1081
MroNI	GCCGGC	1 cut(s)	1070
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	4 cut(s)	204, 278, 612, 1049
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	564
MspI	CCGG	2 cut(s)	1071, 1082
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	6 cut(s)	25, 238, 817, 847, 1139, 1179
NaeI	GCCGGC	1 cut(s)	1072
NdeII	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
NgoMIV	GCCGGC	1 cut(s)	1070
NlaIV	GGNNCC	3 cut(s)	759, 827, 1307
NspI	RCATGY	2 cut(s)	248, 291
NspV	TTCGAA	1 cut(s)	1262
PaeI	GCATGC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	986
PdiI	GCCGGC	1 cut(s)	1072
PfeI	GAWTC	5 cut(s)	89, 635, 790, 908, 1216
PkrI	GCNGC	5 cut(s)	243, 627, 852, 949, 1184
PleI	GAGTC	2 cut(s)	115, 986
PpsI	GAGTC	2 cut(s)	115, 986
Ppu21I	YACGTR	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	3 cut(s)	759, 827, 1307
PspPI	GGNCC	1 cut(s)	826
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	370, 374, 709
RsaNI	GTAC	3 cut(s)	369, 373, 708
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	204, 278, 612, 1049
SatI	GCNGC	5 cut(s)	242, 626, 851, 948, 1183
Sau3AI	GATC	6 cut(s)	178, 520, 673, 856, 1111, 1254
Sau96I	GGNCC	1 cut(s)	826
SchI	GAGTC	2 cut(s)	116, 987
ScrFI	CCNGG	1 cut(s)	917
SexAI	ACCWGGT	1 cut(s)	915
SfaNI	GCATC	9 cut(s)	55, 228, 271, 432, 502, 738, 1018, 1120, 1285
SfcI	CTRYAG	1 cut(s)	796
SfuI	TTCGAA	1 cut(s)	1262
SinI	GGWCC	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	249
SnaBI	TACGTA	1 cut(s)	372
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	8 cut(s)	58, 125, 454, 533, 566, 734, 1026, 1266
SsiI	CCGC	2 cut(s)	291, 836
SspMI	CTAG	5 cut(s)	156, 233, 701, 854, 1089
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	2 cut(s)	276, 797
TaiI	ACGT	2 cut(s)	374, 1195
TaqI	TCGA	4 cut(s)	638, 768, 991, 1262
TasI	AATT	8 cut(s)	58, 125, 454, 533, 566, 734, 1026, 1266
TfiI	GAWTC	5 cut(s)	89, 635, 790, 908, 1216
Tru1I	TTAA	4 cut(s)	204, 278, 612, 1049
Tru9I	TTAA	4 cut(s)	204, 278, 612, 1049
TscAI	CASTG	3 cut(s)	800, 836, 1254
TseI	GCWGC	5 cut(s)	241, 625, 850, 947, 1182
TspGWI	ACGGA	1 cut(s)	1338
TspRI	CASTG	3 cut(s)	800, 836, 1254
VpaK11BI	GGWCC	1 cut(s)	826
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	4 cut(s)	58, 454, 734, 1026
XceI	RCATGY	2 cut(s)	248, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XspI	CTAG	5 cut(s)	156, 233, 701, 854, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.