MD16G1006400.v1.1

ATP-dependent Clp protease adaptor protein ClpS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016323
Physical Location & Seq
Reverse (-)
496122 .. 498102
1981 bp
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UTR
Exon/CDS
Intron
MD16G1006400.v1.1.491

Sequence Viewer

Length: 546 bp
ATGAGCATGGCTGTTACAGGAACAGCTACGGCCTCGTCGTTTTTCCTGACCAAGATGATCGGATTCGCTCCTCTGTCAGCTCCGCCGCGCAGTTGTTGTAAGGTTTTGGCTGTCAAGGAAGGCCCAGAAATACGAGGAGGTAGTCGCGTGGCTGTGACGGCCAGGTTTGGGTCTTCCAAGGGCGGTGGCGCCGGAGTGTTGGAGCGCCCCAAGTTTGACCAATCCGGATTTGATCCTGCCACCCAACTTCAACAAGGAGGAGATATTGGACGATCAAAGGACAAGAGAGGTGTTGGTAGCGGAGATAGTTACAGAGTTTTGCTGATTGATGATGTTCGCCACACCGAAAAATTAGTTGCAAAGGTGTTGCCCCAAGTTGTTCCATCTGTTACACCTGATGTTGCAAGAGGATTATTTCACAAATCAAGGGAAGATGGCGTCGCGGTTGTTATCGTTACAGTGAAGGAACATGCGGAATTTTACTCCCAGATGATGATTCGTGGCGGGTTACGATCAACAATAGAACCGGATTCAAGTAGTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

182

Amino Acids

19.13

Weight (kDa)

9.55

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016323)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36570
malus_domestica MD16G1006400.v1.1
prunus_persica Prupe.1G344200_v2.0.a1
pyrus_communis pycom16g00610
rosa_chinensis RchiOBHm_Chr4g0446331
rosa_laevigata RLG00000005671
rosa_multiflora Rmu_sc0002266.1_g000003 Rmu_sc0007544.1_g000002
rosa_roxburghii Rroxscaffold_5G00386770
rosa_rugosa Rorug04G0370400
rosa_samantha Rh4AG432000 Rh4BG441300 Rh4CG458600 Rh4DG439900
rosa_wichuraiana Rw4G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 3 cut(s) 88, 147, 443
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 7 cut(s) 83, 86, 183, 300, 443, 473, 504
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 476
AcyI GRCGYC 2 cut(s) 189, 438
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 251, 534
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 2 cut(s) 26, 80
AluI AGCT 2 cut(s) 26, 80
AlwI GGATC 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 3 cut(s) 30, 121, 159
ApoI RAATTY 1 cut(s) 476
AspLEI GCGC 3 cut(s) 90, 191, 207
AspS9I GGNCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 165
BccI CCATC 2 cut(s) 391, 428
BceAI ACGGC 2 cut(s) 45, 174
BciT130I CCWGG 1 cut(s) 163
BfoI RGCGCY 2 cut(s) 192, 208
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 165
BsaHI GRCGYC 2 cut(s) 189, 438
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 2 cut(s) 224, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 168
BseRI GAGGAG 3 cut(s) 60, 150, 273
Bsh1236I CGCG 3 cut(s) 88, 147, 443
BshFI GGCC 3 cut(s) 32, 123, 161
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 3 cut(s) 192, 225, 527
BslI CCNNNNNNNGG 1 cut(s) 168
BsnI GGCC 3 cut(s) 32, 123, 161
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 4 cut(s) 57, 232, 272, 512
BspACI CCGC 7 cut(s) 83, 86, 183, 300, 443, 473, 504
BspANI GGCC 3 cut(s) 32, 123, 161
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 3 cut(s) 88, 147, 443
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 57, 232, 272, 512
BssNI GRCGYC 2 cut(s) 189, 438
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 460
BstACI GRCGYC 2 cut(s) 189, 438
BstFNI CGCG 3 cut(s) 88, 147, 443
BstH2I RGCGCY 2 cut(s) 192, 208
BstHHI GCGC 3 cut(s) 90, 191, 207
BstKTI GATC 4 cut(s) 60, 235, 275, 515
BstMBI GATC 4 cut(s) 57, 232, 272, 512
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 3 cut(s) 88, 147, 443
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 3 cut(s) 32, 123, 161
BtsIMutI CAGTG 1 cut(s) 465
CfoI GCGC 3 cut(s) 90, 191, 207
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 7, 470
CviJI RGCY 8 cut(s) 11, 26, 32, 80, 110, 123, 152, 161
CviKI_1 RGCY 8 cut(s) 11, 26, 32, 80, 110, 123, 152, 161
DinI GGCGCC 1 cut(s) 190
DpnI GATC 4 cut(s) 59, 234, 274, 514
DpnII GATC 4 cut(s) 57, 232, 272, 512
EaeI YGGCCR 1 cut(s) 159
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 10, 473
FaiI YATR 2 cut(s) 8, 471
FatI CATG 2 cut(s) 6, 469
FauI CCCGC 1 cut(s) 497
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
GlaI GCGC 3 cut(s) 89, 190, 206
GluI GCNGC 1 cut(s) 86
HaeII RGCGCY 2 cut(s) 192, 208
HaeIII GGCC 3 cut(s) 32, 123, 161
HapII CCGG 3 cut(s) 192, 225, 527
HgaI GACGC 1 cut(s) 427
HhaI GCGC 3 cut(s) 90, 191, 207
Hin1I GRCGYC 2 cut(s) 189, 438
Hin1II CATG 2 cut(s) 10, 473
Hin6I GCGC 3 cut(s) 88, 189, 205
HinP1I GCGC 3 cut(s) 88, 189, 205
HinfI GANTC 3 cut(s) 63, 496, 530
HpaII CCGG 3 cut(s) 192, 225, 527
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 46, 225
Hpy99I CGWCG 2 cut(s) 40, 443
HpyAV CCTTC 2 cut(s) 113, 457
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 2 cut(s) 359, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92I GRCGYC 2 cut(s) 189, 438
Hsp92II CATG 2 cut(s) 10, 473
HspAI GCGC 3 cut(s) 88, 189, 205
KasI GGCGCC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 224
Kzo9I GATC 4 cut(s) 57, 232, 272, 512
LmnI GCTCC 3 cut(s) 73, 85, 202
MaeIII GTNAC 6 cut(s) 13, 154, 308, 388, 454, 507
MalI GATC 4 cut(s) 59, 234, 274, 514
MboI GATC 4 cut(s) 57, 232, 272, 512
MboII GAAGA 2 cut(s) 165, 443
MluCI AATT 2 cut(s) 350, 476
Mly113I GGCGCC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 43, 81, 128, 131, 251, 281, 401
MroI TCCGGA 1 cut(s) 224
MspI CCGG 3 cut(s) 192, 225, 527
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 3 cut(s) 88, 147, 443
MwoI GCNNNNNNNGC 1 cut(s) 158
NarI GGCGCC 1 cut(s) 189
NdeII GATC 4 cut(s) 57, 232, 272, 512
NlaIII CATG 2 cut(s) 10, 473
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 3 cut(s) 63, 496, 530
PkrI GCNGC 1 cut(s) 87
PluTI GGCGCC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 122
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 4 cut(s) 57, 232, 272, 512
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 163
SetI ASST 8 cut(s) 28, 82, 105, 142, 167, 292, 366, 397
SfoI GGCGCC 1 cut(s) 190
Sse9I AATT 2 cut(s) 350, 476
SsiI CCGC 7 cut(s) 83, 86, 183, 300, 443, 473, 504
SspDI GGCGCC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 460
TasI AATT 2 cut(s) 350, 476
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 3 cut(s) 63, 496, 530
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 1 cut(s) 465
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.