Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016323

Physical Location & Seq

Genomic Coordinates Reverse (-)

733892 .. 735464

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAACCACAGCAACGGCGTCGTTTTCGCTGACCAAGATTGCTGGCTTCCCTCCTTCTTCTCCAACTCGCAGCTGTTCTAAGATTCTGGCTGTGAAGGAAGGCCGAGGGATAAGTGGTGGAATGGCTGTGAAGGCCAGGTTTGGGTCTTCCGGAGGTGGAGCTGGAGTCTTGGAGCGCCCCAAGTTTGACCAAACCCAGTTTGACCCTTCCACCCAACTTGAAGAAGGAGGAGATATTGGACGACTGAAGGACAAGAGAGGTACTGGAAGTGGAGATAGTTACAGAGTATTGCTGATTGATGATGTTCGCCATACCGAGAAATTAGTTGCAAAGGTATTGCCCCAAGTTGTTCCATCTATTACCCCTGATGGGGCAAGAGATCTGTTTCACAGGTCGAGAGAAAATGGCGTCGCTGTTGTTATTGTTACAGTAAAGGAACATGCTGAGTTTTACTCCCAAATGATGGTACGCAGTGGATTACGATCATCAATTGAACCGGATTCAAATAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

173

Amino Acids

18.32

Weight (kDa)

9.37

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016323)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36570
malus_domestica	MD16G1006400.v1.1
prunus_persica	Prupe.1G344200_v2.0.a1
pyrus_communis	pycom16g00610
rosa_chinensis	RchiOBHm_Chr4g0446331
rosa_laevigata	RLG00000005671
rosa_multiflora	Rmu_sc0002266.1_g000003 Rmu_sc0007544.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386770
rosa_rugosa	Rorug04G0370400
rosa_samantha	Rh4AG432000 Rh4BG441300 Rh4CG458600 Rh4DG439900
rosa_wichuraiana	Rw4G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccIII	TCCGGA	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	20, 411
AfaI	GTAC	2 cut(s)	265, 471
AfiI	CCNNNNNNNGG	4 cut(s)	144, 372, 373, 466
AgsI	TTSAA	3 cut(s)	224, 497, 507
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	3 cut(s)	75, 164, 513
AluI	AGCT	3 cut(s)	75, 164, 513
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	2 cut(s)	103, 135
ApeKI	GCWGC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	3 cut(s)	364, 365, 460
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	181
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	484
BsaHI	GRCGYC	2 cut(s)	20, 411
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	152, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 372, 373, 466
Bse1I	ACTGG	2 cut(s)	199, 271
Bse8I	GATNNNNATC	1 cut(s)	484
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	484
BseLI	CCNNNNNNNGG	4 cut(s)	144, 372, 373, 466
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	199, 271
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	2 cut(s)	105, 137
BsiSI	CCGG	2 cut(s)	153, 500
BslI	CCNNNNNNNGG	4 cut(s)	144, 372, 373, 466
BsnI	GGCC	2 cut(s)	105, 137
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	382, 485
BspANI	GGCC	2 cut(s)	105, 137
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	199, 271
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	382, 485
BssNI	GRCGYC	2 cut(s)	20, 411
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	433
BstACI	GRCGYC	2 cut(s)	20, 411
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	81, 447
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	385, 488
BstMBI	GATC	2 cut(s)	382, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 134
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	105, 137
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	180
CseI	GACGC	2 cut(s)	9, 400
Csp6I	GTAC	2 cut(s)	264, 470
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	8 cut(s)	48, 75, 92, 105, 128, 137, 164, 513
CviKI_1	RGCY	8 cut(s)	48, 75, 92, 105, 128, 137, 164, 513
CviQI	GTAC	2 cut(s)	264, 470
DdeI	CTNAG	2 cut(s)	81, 447
DpnI	GATC	2 cut(s)	384, 487
DpnII	GATC	2 cut(s)	382, 485
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	446
FaiI	YATR	3 cut(s)	315, 444, 517
FatI	CATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	73
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	105, 137
HapII	CCGG	2 cut(s)	153, 500
HgaI	GACGC	2 cut(s)	9, 400
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	20, 411
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	85, 168, 503
HpaII	CCGG	2 cut(s)	153, 500
Hpy188III	TCNNGA	2 cut(s)	153, 399
Hpy99I	CGWCG	2 cut(s)	25, 416
HpyAV	CCTTC	7 cut(s)	66, 91, 95, 127, 219, 221, 244
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 134
HpyF3I	CTNAG	2 cut(s)	81, 447
Hsp92I	GRCGYC	2 cut(s)	20, 411
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	382, 485
LmnI	GCTCC	2 cut(s)	161, 175
Lsp1109I	GCAGC	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	281, 427
MalI	GATC	2 cut(s)	384, 487
MboI	GATC	2 cut(s)	382, 485
MboII	GAAGA	3 cut(s)	51, 141, 236
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	323, 492
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	63, 101, 149, 224, 254
MroI	TCCGGA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	2 cut(s)	153, 500
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	11, 134
NdeII	GATC	2 cut(s)	382, 485
NlaIII	CATG	1 cut(s)	446
NmeAIII	GCCGAG	1 cut(s)	131
NspI	RCATGY	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	85, 503
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	265, 471
RsaNI	GTAC	2 cut(s)	264, 470
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	382, 485
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	8 cut(s)	77, 143, 160, 166, 265, 339, 398, 515
Sse9I	AATT	2 cut(s)	323, 492
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	323, 492
TfiI	GAWTC	2 cut(s)	85, 503
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	1 cut(s)	72
TspRI	CASTG	1 cut(s)	481
Van91I	CCANNNNNTGG	1 cut(s)	466
XceI	RCATGY	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.