Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002266.1

Orthogroup ID

OG0016323

Physical Location & Seq

Genomic Coordinates Reverse (-)

13970 .. 15551

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002266.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcaaccacagcaacggcgtcgttttcgctgaccaagattgcttgcttccctccgtcgtctccaactcgcagctgttctaagattctggccgtgaaggaaggccgagggataagtggtgggatggctgtgaaggccaggtttgggtcttccggaggtggggctggagtcttggaccgccccaagtttgaccaaacccagtttgacccttctacccaacttcaagaaggaggagatattggacgactgaaggacaagagacgtactggaagtggagatagttacagagttttgctgattgatgatgttcgccatactgagaaattagttgcaaaggtattgccccaagttgttccatctattacccctgatggggcaagagatctatttcataagtcgagagaaaatggcgtcgctgttgttattgttacggtaaaggaacacgctgagttttactcccaaatgatggtacgcagcggattacgatcatcaattgaaccggattcaaatagcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

172

Amino Acids

18.42

Weight (kDa)

9.55

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016323)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36570
malus_domestica	MD16G1006400.v1.1
prunus_persica	Prupe.1G344200_v2.0.a1
pyrus_communis	pycom16g00610
rosa_chinensis	RchiOBHm_Chr4g0446331
rosa_laevigata	RLG00000005671
rosa_multiflora	Rmu_sc0002266.1_g000003 Rmu_sc0007544.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386770
rosa_rugosa	Rorug04G0370400
rosa_samantha	Rh4AG432000 Rh4BG441300 Rh4CG458600 Rh4DG439900
rosa_wichuraiana	Rw4G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	178, 477
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	20, 411
AfaI	GTAC	2 cut(s)	265, 471
AfiI	CCNNNNNNNGG	5 cut(s)	144, 159, 372, 373, 466
AgsI	TTSAA	3 cut(s)	224, 497, 507
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	75, 513
AluI	AGCT	2 cut(s)	75, 513
Alw26I	GTCTC	2 cut(s)	66, 253
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	3 cut(s)	90, 103, 135
ApeKI	GCWGC	2 cut(s)	72, 474
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	84, 486
BccI	CCATC	4 cut(s)	118, 364, 365, 460
BceAI	ACGGC	2 cut(s)	33, 77
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	66, 253
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	73, 475
BlsI	GCNGC	2 cut(s)	74, 476
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	484
BsaHI	GRCGYC	2 cut(s)	20, 411
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	152, 499
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 159, 372, 373, 466
Bse1I	ACTGG	2 cut(s)	199, 271
Bse8I	GATNNNNATC	1 cut(s)	484
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	484
BseLI	CCNNNNNNNGG	5 cut(s)	144, 159, 372, 373, 466
BseMII	CTCAG	2 cut(s)	309, 438
BseNI	ACTGG	2 cut(s)	199, 271
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	84, 486
BshFI	GGCC	3 cut(s)	92, 105, 137
BsiSI	CCGG	2 cut(s)	153, 500
BslI	CCNNNNNNNGG	5 cut(s)	144, 159, 372, 373, 466
BsmAI	GTCTC	2 cut(s)	66, 253
BsmBI	CGTCTC	2 cut(s)	66, 253
BsnI	GGCC	3 cut(s)	92, 105, 137
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	382, 485
BspACI	CCGC	2 cut(s)	178, 477
BspANI	GGCC	3 cut(s)	92, 105, 137
BspCNI	CTCAG	2 cut(s)	310, 439
BspEI	TCCGGA	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	199, 271
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	382, 485
BssNI	GRCGYC	2 cut(s)	20, 411
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	433
BstACI	GRCGYC	2 cut(s)	20, 411
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	3 cut(s)	81, 318, 447
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	385, 488
BstMAI	GTCTC	2 cut(s)	66, 253
BstMBI	GATC	2 cut(s)	382, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 134
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	84, 486
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	92, 105, 137
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	2 cut(s)	9, 400
Csp6I	GTAC	2 cut(s)	264, 470
CviJI	RGCY	7 cut(s)	75, 92, 105, 128, 137, 164, 513
CviKI_1	RGCY	7 cut(s)	75, 92, 105, 128, 137, 164, 513
CviQI	GTAC	2 cut(s)	264, 470
DdeI	CTNAG	3 cut(s)	81, 318, 447
DpnI	GATC	2 cut(s)	384, 487
DpnII	GATC	2 cut(s)	382, 485
EaeI	YGGCCR	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	137
Esp3I	CGTCTC	2 cut(s)	66, 253
FaiI	YATR	3 cut(s)	315, 393, 517
Fnu4HI	GCNGC	2 cut(s)	73, 475
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	73, 475
GluI	GCNGC	2 cut(s)	73, 475
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	92, 105, 137
HapII	CCGG	2 cut(s)	153, 500
HgaI	GACGC	2 cut(s)	9, 400
Hin1I	GRCGYC	2 cut(s)	20, 411
HinfI	GANTC	3 cut(s)	85, 168, 503
HpaII	CCGG	2 cut(s)	153, 500
Hpy188III	TCNNGA	3 cut(s)	153, 224, 399
Hpy99I	CGWCG	3 cut(s)	25, 61, 416
HpyAV	CCTTC	6 cut(s)	91, 95, 127, 219, 221, 244
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 134
HpyF3I	CTNAG	3 cut(s)	81, 318, 447
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	2 cut(s)	20, 411
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	382, 485
LpnPI	CCDG	9 cut(s)	74, 124, 150, 151, 166, 212, 252, 381, 513
Lsp1109I	GCAGC	2 cut(s)	84, 486
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	281, 427
MalI	GATC	2 cut(s)	384, 487
MboI	GATC	2 cut(s)	382, 485
MboII	GAAGA	1 cut(s)	141
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	323, 492
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	63, 101, 149, 224
MroI	TCCGGA	1 cut(s)	152
MspA1I	CMGCKG	2 cut(s)	75, 477
MspI	CCGG	2 cut(s)	153, 500
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	11, 134
NdeII	GATC	2 cut(s)	382, 485
NmeAIII	GCCGAG	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	85, 503
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	74, 476
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	265, 471
RsaNI	GTAC	2 cut(s)	264, 470
SatI	GCNGC	2 cut(s)	73, 475
Sau3AI	GATC	2 cut(s)	382, 485
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	6 cut(s)	77, 143, 160, 265, 339, 515
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	323, 492
SsiI	CCGC	2 cut(s)	178, 477
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	323, 492
TfiI	GAWTC	2 cut(s)	85, 503
TseI	GCWGC	2 cut(s)	72, 474
TspDTI	ATGAA	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.