Rh4AG432000

ATP-dependent Clp protease adaptor protein ClpS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016323
Physical Location & Seq
Forward (+)
72679985 .. 72681591
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG432000.1

Sequence Viewer

Length: 519 bp
ATGGCAACCACAGCAACAGTGTCGTTTTCGCTGACCAAGATTGCTGGCTTCCCTCCTTCTTCTCCAACTCGCAGCTGTTCTAAGATTCTGGCTGTGAAGGAAGGCCGGGGGATAAGTGGTGGAATGGCTGTGAAGGCCAGGTTTGGGTCTTCCGGAGGTGGAGCTGGAGTCTTGGAGCGCCCCAAGTTTGATCAAACCCAGTTTGACCCTTCTACCCAACTTCAAGAAGGAGGAGATATTGGACGACTGAAGGACAAGAGAGGTATTGGAAGTGGAGATAGTTACAGAGTTTTGCTGATTGATGATGTTCGCCATACTGAGAAATTAGTTGCAAAGGTATTGCCCCAAGTTGTTCCATCTATTACCCCTGATGGGGCAAGAGATGTATTTCATAAGTCGAGAGAAAATGGCGTCGCTGTTGTTATTGTTACAGTAAAGGAACATGCTGAGTTTTACTCCCAAATGATGGTACGCAGCGGATTACGATCATCAATTGAACCGGATTCAAATAGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

172

Amino Acids

18.32

Weight (kDa)

9.51

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016323)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36570
malus_domestica MD16G1006400.v1.1
prunus_persica Prupe.1G344200_v2.0.a1
pyrus_communis pycom16g00610
rosa_chinensis RchiOBHm_Chr4g0446331
rosa_laevigata RLG00000005671
rosa_multiflora Rmu_sc0002266.1_g000003 Rmu_sc0007544.1_g000002
rosa_roxburghii Rroxscaffold_5G00386770
rosa_rugosa Rorug04G0370400
rosa_samantha Rh4AG432000 Rh4BG441300 Rh4CG458600 Rh4DG439900
rosa_wichuraiana Rw4G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 4 cut(s) 144, 372, 373, 466
AgsI TTSAA 3 cut(s) 224, 497, 507
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 3 cut(s) 75, 164, 513
AluI AGCT 3 cut(s) 75, 164, 513
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 2 cut(s) 103, 135
ApeKI GCWGC 2 cut(s) 72, 474
AspLEI GCGC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 84, 486
BccI CCATC 3 cut(s) 364, 365, 460
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 2 cut(s) 73, 475
BlsI GCNGC 2 cut(s) 74, 476
Bme1390I CCNGG 2 cut(s) 107, 139
BmrFI CCNGG 2 cut(s) 107, 139
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 2 cut(s) 152, 499
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 372, 373, 466
Bse1I ACTGG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 484
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 4 cut(s) 144, 372, 373, 466
BseMII CTCAG 2 cut(s) 309, 438
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 84, 486
BshFI GGCC 2 cut(s) 105, 137
BsiSI CCGG 3 cut(s) 106, 153, 500
BslI CCNNNNNNNGG 4 cut(s) 144, 372, 373, 466
BsnI GGCC 2 cut(s) 105, 137
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 190, 485
BspACI CCGC 1 cut(s) 477
BspANI GGCC 2 cut(s) 105, 137
BspCNI CTCAG 2 cut(s) 310, 439
BspEI TCCGGA 1 cut(s) 152
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 190, 485
BssNI GRCGYC 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 19, 433
BstACI GRCGYC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 81, 318, 447
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 193, 488
BstMBI GATC 2 cut(s) 190, 485
BstMWI GCNNNNNNNGC 2 cut(s) 11, 134
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 105, 137
BstV1I GCAGC 2 cut(s) 84, 486
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 105, 137
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 180
CseI GACGC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 470
CviAII CATG 1 cut(s) 443
CviJI RGCY 8 cut(s) 48, 75, 92, 105, 128, 137, 164, 513
CviKI_1 RGCY 8 cut(s) 48, 75, 92, 105, 128, 137, 164, 513
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 81, 318, 447
DpnI GATC 2 cut(s) 192, 487
DpnII GATC 2 cut(s) 190, 485
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 446
FaiI YATR 4 cut(s) 315, 393, 444, 517
FatI CATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 73, 475
Fsp4HI GCNGC 2 cut(s) 73, 475
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 73, 475
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 2 cut(s) 105, 137
HapII CCGG 3 cut(s) 106, 153, 500
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 1 cut(s) 446
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 3 cut(s) 85, 168, 503
HpaII CCGG 3 cut(s) 106, 153, 500
Hpy188III TCNNGA 3 cut(s) 153, 224, 399
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 7 cut(s) 66, 91, 95, 127, 219, 221, 244
HpyCH4III ACNGT 2 cut(s) 19, 433
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 134
HpyF3I CTNAG 3 cut(s) 81, 318, 447
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 1 cut(s) 446
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 485
LmnI GCTCC 2 cut(s) 161, 175
Lsp1109I GCAGC 2 cut(s) 84, 486
MaeIII GTNAC 2 cut(s) 281, 427
MalI GATC 2 cut(s) 192, 487
MboI GATC 2 cut(s) 190, 485
MboII GAAGA 2 cut(s) 51, 141
MfeI CAATTG 1 cut(s) 492
MluCI AATT 2 cut(s) 323, 492
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 63, 149, 224, 254
MroI TCCGGA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 75, 477
MspI CCGG 3 cut(s) 106, 153, 500
MspR9I CCNGG 2 cut(s) 107, 139
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 11, 134
NciI CCSGG 1 cut(s) 107
NdeII GATC 2 cut(s) 190, 485
NlaIII CATG 1 cut(s) 446
NspI RCATGY 1 cut(s) 446
PfeI GAWTC 2 cut(s) 85, 503
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 2 cut(s) 74, 476
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SatI GCNGC 2 cut(s) 73, 475
Sau3AI GATC 2 cut(s) 190, 485
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 107, 139
SetI ASST 7 cut(s) 77, 143, 160, 166, 265, 339, 515
Sse9I AATT 2 cut(s) 323, 492
SsiI CCGC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 105, 137
TaaI ACNGT 2 cut(s) 19, 433
TaqI TCGA 1 cut(s) 398
TasI AATT 2 cut(s) 323, 492
TfiI GAWTC 2 cut(s) 85, 503
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 72, 474
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 466
XceI RCATGY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.