Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013007

Physical Location & Seq

Genomic Coordinates Reverse (-)

7926661 .. 7930805

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGTATGTGGTGAAACAACCCGCCACTGCCGCTCTTAAGTCAACCGCTGCCGTTGACCGCCGGGTGAATGGGTCCGGGAACTACGTCAGGGTCGGGAAGGCACGGGTGCCCAGATCCGGGACACGGGTCAAGAGGCACGGATCAGTGAGAGCCGTGATCAGCGGCGGAGACAAGGCGTCCGTGGAGGCTGCGACGCCATTGCAGAGCAAAGGCGTTAATGGGTTGTCTTCTTCGTCTTCTGGAGCTGGAGAGATCCAGGTGAAAGCGGTGGTGACGATCAGGAAGAAGATGAAGGAGAAGATCATAGAGAAGATTGAGGATCAGTGGGAGTTCTTTGTCAATGGGATTGGACAGGGGATTCTGATTCAGCTCATCAGTGAGCAAGTTGATCCTGTTACAAATGCAGGAAAGAGTGTCCAATCCGCCGTGAGAGGGTGGCTGCCAAAGCCGGTGCCCTCGGAGTATGCAAACATTGTCGAATATGCTGCTGACTTCAAAGTCCCATCCGACTTTGGCTGTCCTGGGGCAATTATGGTTTCCAATCTGCAGGGCAAAGAGTTCTACTTGTTGGAGATTGTCATTCATGGTTTCGACGGAGGCCCCATTTTCTTCCCTGCAAACACTTGGATCCATTCACGCAAAGATAATCCGGAAAGTAGAATTATCTTCAAAAATCAAGCATGTCTTCCTGCACAAACACCGCCGGGCCTTAAGGATCTTCGACACGAAGACTTACTCAGCATTCGGGGTAATGGGAAAGGCACGCGAAAGGAACATGATAGAATCTATGATTACGATGTTTACAACGAATTGGGAAATCCTGATAAGAGTGAAGATCTGGCCAGGCCGGTCCTTGGTGGCGAGGAGAGGCCTTATCCTAGGCGCTGTAGGACTGGCCGTCCTCCAACCAAGACAGATTCTCATACCGAAAGTAGAATCGAAAAGCCTCATCCAGTTTATGTGCCTCGGGATGAGACTTTCGAGGAAATTAAGCAGAATGCTTTCTCCACTGGAAGATTGAAAGCTTTACTTCACAATCTCATACCATCTCTTGCTGTTACATTGTCAAGTACAGACAATCCTTTCGAGTGCTTCTCTGATATAGATGACCTATATGTTGACGGTGTCCTCATGAAATGGAAAGAGGAGGAGAAGAAAGAAGGCAAGAAACTGTTTCTGGGCAGCATGGTGAAAGAGGTTTTTTCCGCTGGTGAAAGGTGGTTGAAATACGAAATCCCTGCTGTTATTAAAATGGATAGATTCTCGTGGTTGCGCGATAATGAATTTGCACGCCAAACTTTAGCTGGGGTCAATCCAGTCAACATTGAGATTTTGAAGGAATTTCCGATTCTCAGCAAGCTAGATCCTGCTGTTTACGGTCCTCCCGCATCTGCTATCACAAAGGAATTGTTAGAGCAAGAAATCAATGGGATGAGTGTGGATAAGGCGATTGAGGAGAAGAGACTGTTTATACTTGATCACCATGACACATATATGCCATTTATTGAGAGGATGAACGCCTTGCCTGGGAGAAAAGCTTATGCCTCTAGGACGGTGTTCTTCTATACCCCTACTGGTATTATGAGGCCTATAGCCATTGAGCTTTCACTTCCACCTTTGGCTTCATCCCCGAAATATAAACGTGTTTATACTCACGGGCATCATGCTACTACACATTGGATTTGGAAGCTAGCCAAAGCTCATGTTTGCTCAAATGACGCTGGCATTCATCAACTAGTCAATCACTGGTTGAGGACTCATGCTTGTGTCGAGCCATATATAATTGCGACTCATAGACAGCTTAGCTCAATGCACCCCATTTTCAAGCTACTCCACCCTCACATGCGCTACACTCTAGAAATCAACGCACTGGCACGGCAAAGTTTGATAAACGGAGGGGGAATCATTGAGGCTTCTTATAATCCGGGAAAGTACGCCATGGAGATTAGCTCTGCAGCCTACAAGGAGATGTGGAGGTTTGACATGGAAGCATTACCAGCTGATCTTCTTCAAAGAGGCATGGCTGTGGAAGATCCTTCGGCTCCTTGTGGCGTGAAGCTCGTAATTGAGGACTATCCATACGCTGCGGATGGTCTCCTCGTATGGTCTGCTATAAAAGAATGGGTAGAATCATATGTCGGACACTACTACTCCGAGCCAAATTCTGTAACGTCTGACATTGAGCTCCAACAGTGGTGGAGTGAGATCAAGAATAAGGGTCACCACGACAAGCGAAATGAGCCTTGGTGGCCTAAACTCGATACCAAAGAGGACTTATCCGGTATACTTACAACGATTATTTGGGTCGCTTCAGGTCAACACGCAGCCATCAACTTTGGCCAGTACCCTTTTGGTGGTTATGTACCAAACCGTCCGACCATTATGAGAAAACTCATTCCGCAAGAAGACAGCCCTGATTACGAGAAGTTTATTTCTAACCCGCAGCAAACTTTTCTGTCTTCCTTGGCAACTAGACTTCAAGCCACCAAGATAATGGCCGTACAAGATACGCTCTCAACTCACTCCCCCGATGAAGAGTACTTGGGTCAGGTGAACCCGCTGGAATCCCATTGGATCAACGATAATGAAGTTATGAAGTTGTTCAATAGATTCTCCGATAGGCTCAAGGAGATAGACCAGACCATTAACCTACGAAACAAAGATAGCCGTCTTAAAAACAGGAGTGGAGCTGGCATTCCGCCATACGAATTGCTGCTTCCCACCTCAGGCCCTGGAGTAACTGGCCGCGGAATCCCCAACAGCATTTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006629 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

925

Amino Acids

103.9

Weight (kDa)

8.16

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	236 - 907	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67560
fragaria_vesca	FvH4_4g24180 FvH4_4g24180
malus_domestica	MD13G1114000.v1.1 MD16G1113200.v1.1
prunus_persica	Prupe.1G232400_v2.0.a1
pyrus_communis	pycom13g09920 pycom16g09610
rosa_chinensis	RchiOBHm_Chr4g0430941
rosa_laevigata	RLG00000006936
rosa_multiflora	Rmu_sc0006263.1_g000014
rosa_roxburghii	Rroxscaffold_5G00372630
rosa_rugosa	Rorug04G0247400
rosa_samantha	Rh4AG304000 Rh4BG311300 Rh4CG327600 Rh4DG307400
rosa_wichuraiana	Rw4G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1920
AasI	GACNNNNNNGTC	1 cut(s)	497
AccB1I	GGYRCC	2 cut(s)	106, 451
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	2284
AccII	CGCG	3 cut(s)	766, 1275, 2748
AccIII	TCCGGA	1 cut(s)	649
AcoI	YGGCCR	5 cut(s)	840, 895, 2338, 2496, 2743
AcsI	RAATTY	3 cut(s)	1283, 1340, 2161
AcuI	CTGAAG	1 cut(s)	2295
AcyI	GRCGYC	2 cut(s)	176, 194
AfaI	GTAC	6 cut(s)	1072, 1934, 2345, 2364, 2502, 2540
AfiI	CCNNNNNNNGG	8 cut(s)	116, 117, 123, 432, 854, 1527, 2354, 2726
AflII	CTTAAG	2 cut(s)	35, 710
AflIII	ACRYGT	1 cut(s)	1642
AgsI	TTSAA	9 cut(s)	496, 670, 1021, 1225, 1336, 1825, 2012, 2480, 2605
AhdI	GACNNNNNGTC	2 cut(s)	175, 897
AhlI	ACTAGT	1 cut(s)	1735
AjnI	CCWGG	5 cut(s)	255, 520, 842, 1525, 2731
AjuI	GAANNNNNNNTTGG	2 cut(s)	2227, 2259
Alw21I	GWGCWC	1 cut(s)	2187
Alw26I	GTCTC	4 cut(s)	162, 968, 1456, 2099
AlwNI	CAGNNNCTG	1 cut(s)	2732
Ama87I	CYCGRG	1 cut(s)	966
Aor13HI	TCCGGA	1 cut(s)	649
ApoI	RAATTY	3 cut(s)	1283, 1340, 2161
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
Asp700I	GAANNNNTTC	2 cut(s)	1001, 2600
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	3 cut(s)	885, 1275, 1848
AspS9I	GGNCC	6 cut(s)	72, 599, 706, 850, 1379, 2729
AsuC2I	CCSGG	5 cut(s)	62, 76, 118, 705, 1926
AsuHPI	GGTGA	9 cut(s)	22, 76, 271, 283, 1201, 1223, 1472, 2213, 2563
AsuNHI	GCTAGC	1 cut(s)	1690
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	3 cut(s)	72, 850, 1379
AvrII	CCTAGG	1 cut(s)	878
AxyI	CCTNAGG	1 cut(s)	2725
BaeGI	GKGCMC	2 cut(s)	111, 456
BalI	TGGCCA	2 cut(s)	842, 2340
BamHI	GGATCC	1 cut(s)	627
BanI	GGYRCC	2 cut(s)	106, 451
BanII	GRGCYC	1 cut(s)	2187
BauI	CACGAG	1 cut(s)	1264
BbsI	GAAGAC	6 cut(s)	219, 228, 677, 735, 2412, 2451
Bbv12I	GWGCWC	1 cut(s)	2187
BccI	CCATC	4 cut(s)	511, 1054, 2084, 2336
BceAI	ACGGC	7 cut(s)	35, 137, 410, 882, 1892, 2483, 2652
BcgI	CGANNNNNNTGC	6 cut(s)	181, 215, 467, 501, 1220, 1254
BciT130I	CCWGG	5 cut(s)	257, 522, 844, 1527, 2733
BclI	TGATCA	2 cut(s)	156, 1477
BcnI	CCSGG	5 cut(s)	62, 76, 118, 705, 1926
BcoDI	GTCTC	4 cut(s)	162, 968, 1456, 2099
BcuI	ACTAGT	1 cut(s)	1735
BfaI	CTAG	7 cut(s)	879, 1361, 1548, 1691, 1736, 1856, 2472
BfmI	CTRYAG	4 cut(s)	545, 886, 1590, 1953
BfoI	RGCGCY	1 cut(s)	886
BfrI	CTTAAG	2 cut(s)	35, 710
BglI	GCCNNNNNGGC	1 cut(s)	2248
BglII	AGATCT	1 cut(s)	835
BlnI	CCTAGG	1 cut(s)	878
BlpI	GCTNAGC	1 cut(s)	1802
BmcAI	AGTACT	1 cut(s)	2540
Bme18I	GGWCC	3 cut(s)	72, 850, 1379
BmeRI	GACNNNNNGTC	2 cut(s)	175, 897
BmeT110I	CYCGRG	1 cut(s)	966
BmgT120I	GGNCC	6 cut(s)	72, 599, 706, 850, 1379, 2729
BmiI	GGNNCC	6 cut(s)	73, 108, 453, 601, 629, 2043
BmsI	GCATC	2 cut(s)	1397, 1669
BmtI	GCTAGC	1 cut(s)	1694
BoxI	GACNNNNGTC	1 cut(s)	125
BpiI	GAAGAC	6 cut(s)	219, 228, 677, 735, 2412, 2451
BplI	GAGNNNNNCTC	4 cut(s)	1079, 1111, 1934, 1966
BpmI	CTGGAG	3 cut(s)	261, 267, 2754
Bpu1102I	GCTNAGC	1 cut(s)	1802
BpuEI	CTTGAG	1 cut(s)	2609
BpuMI	CCSGG	5 cut(s)	62, 76, 118, 705, 1926
BsaHI	GRCGYC	2 cut(s)	176, 194
BsaI	GGTCTC	1 cut(s)	2099
BsaWI	WCCGGW	2 cut(s)	649, 2279
BsaXI	ACNNNNNCTCC	2 cut(s)	2135, 2165
Bsc4I	CCNNNNNNNGG	8 cut(s)	116, 117, 123, 432, 854, 1527, 2354, 2726
Bse118I	RCCGGY	2 cut(s)	448, 847
Bse1I	ACTGG	9 cut(s)	898, 953, 1015, 1316, 1579, 1751, 1875, 2341, 2746
Bse21I	CCTNAGG	1 cut(s)	2725
Bse3DI	GCAATG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	5 cut(s)	257, 522, 844, 1527, 2733
BseGI	GGATG	7 cut(s)	503, 949, 976, 1437, 1518, 1625, 2095
BseLI	CCNNNNNNNGG	8 cut(s)	116, 117, 123, 432, 854, 1527, 2354, 2726
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	3 cut(s)	751, 1366, 2739
BseNI	ACTGG	9 cut(s)	898, 953, 1015, 1316, 1579, 1751, 1875, 2341, 2746
BseRI	GAGGAG	5 cut(s)	878, 1160, 1163, 1469, 2087
BseSI	GKGCMC	2 cut(s)	111, 456
BseYI	CCCAGC	1 cut(s)	1304
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	3 cut(s)	766, 1275, 2748
BshNI	GGYRCC	2 cut(s)	106, 451
BsiHKAI	GWGCWC	1 cut(s)	2187
BsiHKCI	CYCGRG	1 cut(s)	966
BsiSI	CCGG	9 cut(s)	61, 75, 117, 449, 650, 704, 848, 1925, 2280
BslFI	GGGAC	2 cut(s)	133, 485
BslI	CCNNNNNNNGG	8 cut(s)	116, 117, 123, 432, 854, 1527, 2354, 2726
BsmAI	GTCTC	4 cut(s)	162, 968, 1456, 2099
BsmFI	GGGAC	2 cut(s)	133, 485
BsmI	GAATGC	4 cut(s)	741, 1003, 1725, 2694
Bso31I	GGTCTC	1 cut(s)	2099
BsoBI	CYCGRG	1 cut(s)	966
Bsp1286I	GDGCHC	3 cut(s)	111, 456, 2187
Bsp13I	TCCGGA	1 cut(s)	649
Bsp1720I	GCTNAGC	1 cut(s)	1802
Bsp19I	CCATGG	1 cut(s)	1938
BspCNI	CTCAG	3 cut(s)	750, 1365, 2738
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	3 cut(s)	766, 1275, 2748
BspHI	TCATGA	1 cut(s)	1131
BspLI	GGNNCC	6 cut(s)	73, 108, 453, 601, 629, 2043
BspMAI	CTGCAG	2 cut(s)	549, 1957
BspOI	GCTAGC	1 cut(s)	1694
BspT107I	GGYRCC	2 cut(s)	106, 451
BspTI	CTTAAG	2 cut(s)	35, 710
BspTNI	GGTCTC	1 cut(s)	2099
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	448, 847
BsrI	ACTGG	9 cut(s)	898, 953, 1015, 1316, 1579, 1751, 1875, 2341, 2746
BssAI	RCCGGY	2 cut(s)	448, 847
BssNAI	GTATAC	1 cut(s)	2285
BssNI	GRCGYC	2 cut(s)	176, 194
BssSI	CACGAG	1 cut(s)	1264
BssT1I	CCWWGG	5 cut(s)	853, 878, 1938, 2243, 2463
Bst1107I	GTATAC	1 cut(s)	2285
Bst2BI	CACGAG	1 cut(s)	1264
Bst2UI	CCWGG	5 cut(s)	257, 522, 844, 1527, 2733
Bst4CI	ACNGT	7 cut(s)	1124, 1173, 1379, 1467, 1555, 2193, 2372
Bst6I	CTCTTC	2 cut(s)	1454, 2529
BstACI	GRCGYC	2 cut(s)	176, 194
BstAFI	CTTAAG	2 cut(s)	35, 710
BstC8I	GCNNGC	6 cut(s)	764, 1291, 1358, 1692, 1723, 2692
BstDEI	CTNAG	4 cut(s)	737, 1352, 1802, 2725
BstDSI	CCRYGG	3 cut(s)	180, 1938, 2746
BstEII	GGTNACC	1 cut(s)	2219
BstF5I	GGATG	7 cut(s)	503, 949, 976, 1437, 1518, 1625, 2095
BstFNI	CGCG	3 cut(s)	766, 1275, 2748
BstH2I	RGCGCY	1 cut(s)	886
BstHHI	GCGC	3 cut(s)	885, 1275, 1848
BstMAI	GTCTC	4 cut(s)	162, 968, 1456, 2099
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 445, 1997, 2239, 2248
BstNI	CCWGG	5 cut(s)	257, 522, 844, 1527, 2733
BstNSI	RCATGY	2 cut(s)	684, 1846
BstPAI	GACNNNNGTC	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	2219
BstSFI	CTRYAG	4 cut(s)	545, 886, 1590, 1953
BstSLI	GKGCMC	2 cut(s)	111, 456
BstUI	CGCG	3 cut(s)	766, 1275, 2748
BstV2I	GAAGAC	6 cut(s)	219, 228, 677, 735, 2412, 2451
BstX2I	RGATCY	7 cut(s)	113, 252, 627, 715, 835, 1363, 2032
BstXI	CCANNNNNNTGG	1 cut(s)	2494
BstYI	RGATCY	7 cut(s)	113, 252, 627, 715, 835, 1363, 2032
BstZ17I	GTATAC	1 cut(s)	2285
Bsu36I	CCTNAGG	1 cut(s)	2725
BtgI	CCRYGG	3 cut(s)	180, 1938, 2746
BtsCI	GGATG	7 cut(s)	503, 949, 976, 1437, 1518, 1625, 2095
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	8 cut(s)	24, 150, 329, 382, 1008, 1744, 1868, 2198
Cac8I	GCNNGC	6 cut(s)	764, 1291, 1358, 1692, 1723, 2692
CaiI	CAGNNNCTG	1 cut(s)	2732
CciI	TCATGA	1 cut(s)	1131
CfoI	GCGC	3 cut(s)	885, 1275, 1848
Cfr10I	RCCGGY	2 cut(s)	448, 847
Cfr13I	GGNCC	6 cut(s)	72, 599, 706, 850, 1379, 2729
Cfr42I	CCGCGG	1 cut(s)	2749
CseI	GACGC	3 cut(s)	165, 202, 1727
Csp6I	GTAC	6 cut(s)	1071, 1933, 2344, 2363, 2501, 2539
CspCI	CAANNNNNGTGG	2 cut(s)	2177, 2212
CviQI	GTAC	6 cut(s)	1071, 1933, 2344, 2363, 2501, 2539
DdeI	CTNAG	4 cut(s)	737, 1352, 1802, 2725
DrdI	GACNNNNNNGTC	1 cut(s)	497
DriI	GACNNNNNGTC	2 cut(s)	175, 897
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	5 cut(s)	840, 895, 2338, 2496, 2743
Eam1104I	CTCTTC	2 cut(s)	1454, 2529
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 897
EarI	CTCTTC	2 cut(s)	1454, 2529
EciI	GGCGGA	3 cut(s)	180, 412, 2688
Ecl136II	GAGCTC	1 cut(s)	2185
Eco130I	CCWWGG	5 cut(s)	853, 878, 1938, 2243, 2463
Eco147I	AGGCCT	2 cut(s)	871, 1588
Eco24I	GRGCYC	1 cut(s)	2187
Eco31I	GGTCTC	1 cut(s)	2099
Eco47I	GGWCC	3 cut(s)	72, 850, 1379
Eco53kI	GAGCTC	1 cut(s)	2185
Eco57I	CTGAAG	1 cut(s)	2295
Eco81I	CCTNAGG	1 cut(s)	2725
Eco88I	CYCGRG	1 cut(s)	966
Eco91I	GGTNACC	1 cut(s)	2219
EcoICRI	GAGCTC	1 cut(s)	2185
EcoO109I	RGGNCCY	2 cut(s)	599, 2729
EcoO65I	GGTNACC	1 cut(s)	2219
EcoRII	CCWGG	5 cut(s)	255, 520, 842, 1525, 2731
EcoT14I	CCWWGG	5 cut(s)	853, 878, 1938, 2243, 2463
EcoT38I	GRGCYC	1 cut(s)	2187
ErhI	CCWWGG	5 cut(s)	853, 878, 1938, 2243, 2463
FalI	AAGNNNNNCTT	4 cut(s)	669, 701, 1014, 1046
FaqI	GGGAC	2 cut(s)	133, 485
FauI	CCCGC	4 cut(s)	28, 1393, 2448, 2565
FauNDI	CATATG	1 cut(s)	2134
FbaI	TGATCA	2 cut(s)	156, 1477
FblI	GTMKAC	1 cut(s)	2284
FokI	GGATG	7 cut(s)	490, 936, 983, 1444, 1525, 1612, 2102
FriOI	GRGCYC	1 cut(s)	2187
FspBI	CTAG	7 cut(s)	879, 1361, 1548, 1691, 1736, 1856, 2472
GlaI	GCGC	3 cut(s)	884, 1274, 1847
GsaI	CCCAGC	1 cut(s)	1308
GsuI	CTGGAG	3 cut(s)	261, 267, 2754
HaeII	RGCGCY	1 cut(s)	886
HapII	CCGG	9 cut(s)	61, 75, 117, 449, 650, 704, 848, 1925, 2280
HgaI	GACGC	3 cut(s)	165, 202, 1727
HhaI	GCGC	3 cut(s)	885, 1275, 1848
Hin1I	GRCGYC	2 cut(s)	176, 194
Hin6I	GCGC	3 cut(s)	883, 1273, 1846
HinP1I	GCGC	3 cut(s)	883, 1273, 1846
HincII	GTYRAC	5 cut(s)	42, 55, 1120, 1321, 2318
HindII	GTYRAC	5 cut(s)	42, 55, 1120, 1321, 2318
HindIII	AAGCTT	2 cut(s)	1023, 1536
HpaII	CCGG	9 cut(s)	61, 75, 117, 449, 650, 704, 848, 1925, 2280
HphI	GGTGA	9 cut(s)	22, 76, 271, 283, 1201, 1223, 1472, 2213, 2563
Hpy166II	GTNNAC	9 cut(s)	42, 55, 802, 1120, 1321, 1375, 2285, 2318, 2554
Hpy8I	GTNNAC	9 cut(s)	42, 55, 802, 1120, 1321, 1375, 2285, 2318, 2554
Hpy99I	CGWCG	2 cut(s)	196, 596
HpyAV	CCTTC	5 cut(s)	91, 286, 1154, 1330, 2046
HpyCH4III	ACNGT	7 cut(s)	1124, 1173, 1379, 1467, 1555, 2193, 2372
HpyCH4IV	ACGT	3 cut(s)	84, 1642, 2171
HpyCH4V	TGCA	9 cut(s)	202, 404, 467, 547, 617, 692, 1289, 1813, 1955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 445, 1997, 2239, 2248
HpyF3I	CTNAG	4 cut(s)	737, 1352, 1802, 2725
HpySE526I	ACGT	3 cut(s)	84, 1642, 2171
Hsp92I	GRCGYC	2 cut(s)	176, 194
HspAI	GCGC	3 cut(s)	883, 1273, 1846
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	2 cut(s)	156, 1477
KspI	CCGCGG	1 cut(s)	2749
LmnI	GCTCC	4 cut(s)	242, 2047, 2190, 2687
LweI	GCATC	2 cut(s)	1397, 1669
MaeI	CTAG	7 cut(s)	879, 1361, 1548, 1691, 1736, 1856, 2472
MaeII	ACGT	3 cut(s)	84, 1642, 2171
MaeIII	GTNAC	6 cut(s)	271, 394, 1057, 2167, 2219, 2737
MbiI	CCGCTC	1 cut(s)	32
MflI	RGATCY	7 cut(s)	113, 252, 627, 715, 835, 1363, 2032
MhlI	GDGCHC	3 cut(s)	111, 456, 2187
MlsI	TGGCCA	2 cut(s)	842, 2340
MluNI	TGGCCA	2 cut(s)	842, 2340
MlyI	GAGTC	2 cut(s)	1750, 1783
MmeI	TCCRAC	6 cut(s)	531, 549, 929, 2119, 2212, 2399
Mox20I	TGGCCA	2 cut(s)	842, 2340
MroI	TCCGGA	1 cut(s)	649
MroXI	GAANNNNTTC	2 cut(s)	1001, 2600
MscI	TGGCCA	2 cut(s)	842, 2340
MseI	TTAA	7 cut(s)	36, 216, 711, 990, 1248, 2646, 2673
MslI	CAYNNNNRTG	3 cut(s)	1493, 1764, 2024
Msp20I	TGGCCA	2 cut(s)	842, 2340
MspA1I	CMGCKG	6 cut(s)	47, 162, 1208, 2000, 2560, 2748
MspCI	CTTAAG	2 cut(s)	35, 710
MspI	CCGG	9 cut(s)	61, 75, 117, 449, 650, 704, 848, 1925, 2280
Mva1269I	GAATGC	4 cut(s)	741, 1003, 1725, 2694
MvaI	CCWGG	5 cut(s)	257, 522, 844, 1527, 2733
MvnI	CGCG	3 cut(s)	766, 1275, 2748
MwoI	GCNNNNNNNGC	5 cut(s)	29, 445, 1997, 2239, 2248
NciI	CCSGG	5 cut(s)	62, 76, 118, 705, 1926
NcoI	CCATGG	1 cut(s)	1938
NdeI	CATATG	1 cut(s)	2134
NheI	GCTAGC	1 cut(s)	1690
NlaIV	GGNNCC	6 cut(s)	73, 108, 453, 601, 629, 2043
NmuCI	GTSAC	2 cut(s)	271, 2219
NspI	RCATGY	2 cut(s)	684, 1846
PagI	TCATGA	1 cut(s)	1131
PceI	AGGCCT	2 cut(s)	871, 1588
PctI	GAATGC	4 cut(s)	741, 1003, 1725, 2694
PdmI	GAANNNNTTC	2 cut(s)	1001, 2600
PflFI	GACNNNGTC	1 cut(s)	1124
PfoI	TCCNGGA	3 cut(s)	74, 116, 1924
PleI	GAGTC	2 cut(s)	1750, 1783
PpsI	GAGTC	2 cut(s)	1750, 1783
PshAI	GACNNNNGTC	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	1920
Psp124BI	GAGCTC	1 cut(s)	2187
Psp6I	CCWGG	5 cut(s)	255, 520, 842, 1525, 2731
PspEI	GGTNACC	1 cut(s)	2219
PspFI	CCCAGC	1 cut(s)	1304
PspGI	CCWGG	5 cut(s)	255, 520, 842, 1525, 2731
PspN4I	GGNNCC	6 cut(s)	73, 108, 453, 601, 629, 2043
PspPI	GGNCC	6 cut(s)	72, 599, 706, 850, 1379, 2729
PstI	CTGCAG	2 cut(s)	549, 1957
PstNI	CAGNNNCTG	1 cut(s)	2732
PsuI	RGATCY	7 cut(s)	113, 252, 627, 715, 835, 1363, 2032
PsyI	GACNNNGTC	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	2000
RsaI	GTAC	6 cut(s)	1072, 1934, 2345, 2364, 2502, 2540
RsaNI	GTAC	6 cut(s)	1071, 1933, 2344, 2363, 2501, 2539
RseI	CAYNNNNRTG	3 cut(s)	1493, 1764, 2024
SacI	GAGCTC	1 cut(s)	2187
SacII	CCGCGG	1 cut(s)	2749
SaqAI	TTAA	7 cut(s)	36, 216, 711, 990, 1248, 2646, 2673
Sau96I	GGNCC	6 cut(s)	72, 599, 706, 850, 1379, 2729
ScaI	AGTACT	1 cut(s)	2540
SchI	GAGTC	2 cut(s)	1750, 1783
SduI	GDGCHC	3 cut(s)	111, 456, 2187
SfaNI	GCATC	2 cut(s)	1397, 1669
SfcI	CTRYAG	4 cut(s)	545, 886, 1590, 1953
Sfr303I	CCGCGG	1 cut(s)	2749
SgrBI	CCGCGG	1 cut(s)	2749
SinI	GGWCC	3 cut(s)	72, 850, 1379
SmiMI	CAYNNNNRTG	3 cut(s)	1493, 1764, 2024
SmlI	CTYRAG	3 cut(s)	35, 710, 2624
SmoI	CTYRAG	3 cut(s)	35, 710, 2624
SpeI	ACTAGT	1 cut(s)	1735
SseBI	AGGCCT	2 cut(s)	871, 1588
SspMI	CTAG	7 cut(s)	879, 1361, 1548, 1691, 1736, 1856, 2472
SstI	GAGCTC	1 cut(s)	2187
StuI	AGGCCT	2 cut(s)	871, 1588
StyI	CCWWGG	5 cut(s)	853, 878, 1938, 2243, 2463
TaaI	ACNGT	7 cut(s)	1124, 1173, 1379, 1467, 1555, 2193, 2372
TaiI	ACGT	3 cut(s)	87, 1645, 2174
TaqI	TCGA	8 cut(s)	477, 591, 721, 939, 981, 1086, 1770, 2259
TatI	WGTACW	2 cut(s)	1070, 2538
TauI	GCSGC	3 cut(s)	32, 165, 2748
Tru1I	TTAA	7 cut(s)	36, 216, 711, 990, 1248, 2646, 2673
Tru9I	TTAA	7 cut(s)	36, 216, 711, 990, 1248, 2646, 2673
TscAI	CASTG	8 cut(s)	31, 150, 329, 382, 1015, 1751, 1875, 2198
TseFI	GTSAC	2 cut(s)	271, 2219
Tsp45I	GTSAC	2 cut(s)	271, 2219
TspGWI	ACGGA	4 cut(s)	153, 169, 609, 1908
TspRI	CASTG	8 cut(s)	31, 150, 329, 382, 1015, 1751, 1875, 2198
Tth111I	GACNNNGTC	1 cut(s)	1124
Vha464I	CTTAAG	2 cut(s)	35, 710
VpaK11BI	GGWCC	3 cut(s)	72, 850, 1379
XapI	RAATTY	3 cut(s)	1283, 1340, 2161
XbaI	TCTAGA	1 cut(s)	1855
XceI	RCATGY	2 cut(s)	684, 1846
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1301, 2348, 2491
XmaJI	CCTAGG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	2284
XmnI	GAANNNNTTC	2 cut(s)	1001, 2600
XspI	CTAG	7 cut(s)	879, 1361, 1548, 1691, 1736, 1856, 2472
ZrmI	AGTACT	1 cut(s)	2540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.