Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013007

Physical Location & Seq

Genomic Coordinates Forward (+)

54028195 .. 54032338

Gene Structure 4144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGTATGCATTGAATCAGCCACTGGTTTCTTTCAAGTCAAGCCTCGCCGGCGGCCGGCGGTCAACCGGGAAGTTCATCAAGCTCCGGAAGGCGCATGTCCCCAGTTTCGGGTCCCGGCCCAATGGGCTTGGATCAGTCAGAGCCGTGATCAGCGGTGGTGACAAGGCGGCAGTGGAAGAAGCTTCAACTCCTCCATTGCAGAGCAAAGACATTAGTGGCACTTTGAAACCTTCTTCTTCTTCTCCGATCGAAGTCAAGGCGGTGGTGACGATCAGAAAGAAAATGAAGGAGAAGGTCTCGGAGAAGATTGGGGATCAGTGGGAGTTCTTTATTAATGGGATTGGTCAGGGGATTCTGATCCAGCTCATCAGTGAAGAAATTGACCCTGTTACTAATTCAGGAAAGATAGTGGAATCTGCTGTGAGAGGCTGGTTGCCAAAGCCATTATCATCAGAGCATTCCCACATAATTGAGTATGCTGCTGATTTCACTGTCCCAAGTGACTTTGGGTGTCCTGGAGCTGTTCGTGTTACTAATCTCCATGGCAAGGAGTTTTACTTGTTGGAGATTGTCATACATGGAGCTATGCTTACATTGTTTTATTGTTGTAAACAGGCATACCTGCCTTCACAAACACCAGCAGGGATTAAAGGTCTTCGACATGAAGACTTACTGAGTATTCGGGGCAATGGGAAGGGCAGGAGAAAGCCACATGATAGGATTTATGATTATGATGTTTACAATGAGTTGGGGAATCCTGACAAGAGTGAAGAACTAGCTAGGCCGGTCATTGGTGGCGAGGAGAGGCCTTATCCTCGGCGCTGTAGAACTGGCCGGCCTCCATCCAAGTCAGATCCTCTTACGGAGAGTAGAATCGAGAAGCCACATCCAGTTTATGTGCCTCGTGATGAGACTTTTGAGGAGATTAAGCAAAATACTTTCTCTCGTGGAAGGTTGAAAGCTTTGCTCCACAATCTGTTACCGTCTCTTGCTGTTAAGTTGTCAAGTTCAGACATACCCTTCAAGTGCTTCTCTGATATAGATAAGCTATATAATGATGGTCTCCTCCCGAAAGATGACGATGAGCAGAAAGAATCAGTTCTGTTTTCAGGCAACATGATGAAACAGGTTCTTAATGCTGGAGGAGAGTGGTTGAAATACGAAATCCCTGCTATTATAAAAAGGGATAGATTTGCTTGGTTGCGTGATAATGAGTTTGCACGGCAAGCTTTAGCTGGAGTCAATCCAGTGAACATTGAGATTTTGAAGGAATTTCCAATTCTCAGCAAGTTAGATCCTGCTGTTTACGGCCCTCCAGAATCTGCTATCACAAAGGAATTGATAGAGCAAGAACTCGGTGGGATGAGTGTTGAAAAGGCTATTGAGGATAAGAGACTGTTTATACTTGACTACCATGATATATTTTTGCCATTTATTGAGAAGATGAACTCTTTGCCTGGAAGAAAAGCCTATGCCTCACGGACAGTATTCTTCTATACCAAGACTGGTTTTTTGAGACCTCTAGCTATAGAGCTTTCACTTCCACCAACACCTTCATCTCCTCAAAAAAAACATGTATATACTCATGGGCATCATGCTACTACACACTGGATTTGGAAGCTAGCCAAAGCTCATGTTTGCTCAAATGACGCCGGCGTCCATCAGCTAGTCAATCACTGGTTGAGGACTCATGCTTGCATGGAGCCGTATATAATTGCCACTCATAGGCAGCTTAGCGCAATGCACCCCATCTACAAGCTACTTCATCCTCACATGCGCTACACCTTAGAAATTAATGCACTTGCAAGGCAGAGTTTAATAAATGGAGGGGGAGTAATCGAGGCTTCTTTTAGTCCGGGAAAATATGCCATGGAGGTAAGCTCAGCAGCTTACAAGAGTATGTGGAGGTTTGACTTGGAGGCATTACCGGCCGATCTTATTCGAAGAGGCATGGCTGTGGAAGATCCTTCGGAACCTTGCGGCATAAAACTTGTAATTGAGGACTATCCATATGCTGCAGATGGTCTCCTTGTATGGTTTGCCATAAAAGAATGGGTAGAATCTTATGTGGAACGTTTCTACTCCAAGCCAAATTCTGTGACATCAGATGTTGAGCTCCAAGACTGGTGGAATGAGATCAAGAACAAGGGTCATGCTGACAAGCGGAACGAGCCCTGGTGGCCTAAACTTAATACCAAAGAGGACTTATCTGGTATACTTACAATAATAATTTGGACTGCTTCAGGTCAACATGCTGCCATCAACTTTGGCCAGTACCCTTTTGGCAGTTATGTCCCAAACCGCCCTACCCTTATGAGAAAACTTATTCCACAAGAAGATGACCCTGATTATGAGAAGTTTCTTCAAAACCCGCAGCAAACTTTCCTGTCTTCCTTGGCAACAAAACTTCAAGCCACGAAAGTAATGGCCGTTCAAGATACTCTATCAACTCACTCCCCAGATGAAGAGTACTTGGGTCAGGTGAATCCTCTCCATACCCATTGGATCAATGATCATGAAATTTTGGAGTTGTTCAAAAGATTCTCTTCTAGACTAGATGAGATAGAGAAGATCATTAACAGGAAAAACAAAGATGGCCACTTTAAAAACAGAAGCGGAGCAGGAATTCCCCCATATGAATTGCTGATCCCTTCTTCAGGCCCAGGGGTAACTGGCCGTGGAATCCCCAACAGCATTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006629 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

901

Amino Acids

101.45

Weight (kDa)

8.42

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	216 - 884	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67560
fragaria_vesca	FvH4_4g24180 FvH4_4g24180
malus_domestica	MD13G1114000.v1.1 MD16G1113200.v1.1
prunus_persica	Prupe.1G232400_v2.0.a1
pyrus_communis	pycom13g09920 pycom16g09610
rosa_chinensis	RchiOBHm_Chr4g0430941
rosa_laevigata	RLG00000006936
rosa_multiflora	Rmu_sc0006263.1_g000014
rosa_roxburghii	Rroxscaffold_5G00372630
rosa_rugosa	Rorug04G0247400
rosa_samantha	Rh4AG304000 Rh4BG311300 Rh4CG327600 Rh4DG307400
rosa_wichuraiana	Rw4G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1178
AasI	GACNNNNNNGTC	1 cut(s)	1655
Acc36I	ACCTGC	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	2215
AccIII	TCCGGA	1 cut(s)	84
AclI	AACGTT	1 cut(s)	2074
AclWI	GGATC	8 cut(s)	139, 321, 352, 848, 1289, 1958, 2513, 2641
AcoI	YGGCCR	7 cut(s)	52, 832, 1929, 2269, 2427, 2596, 2674
AcsI	RAATTY	4 cut(s)	1271, 2092, 2520, 2625
AcuI	CTGAAG	2 cut(s)	2226, 2640
AcyI	GRCGYC	2 cut(s)	1650, 1656
AfaI	GTAC	2 cut(s)	2276, 2471
AfiI	CCNNNNNNNGG	7 cut(s)	54, 107, 108, 547, 791, 1725, 2657
AflIII	ACRYGT	1 cut(s)	1573
AjnI	CCWGG	4 cut(s)	514, 1456, 2174, 2662
Alw21I	GWGCWC	1 cut(s)	2118
Alw26I	GTCTC	7 cut(s)	301, 905, 990, 1067, 1387, 1510, 2030
AlwI	GGATC	8 cut(s)	139, 321, 352, 848, 1289, 1958, 2513, 2641
AlwNI	CAGNNNCTG	2 cut(s)	22, 1322
Aor13HI	TCCGGA	1 cut(s)	84
ApeKI	GCWGC	6 cut(s)	479, 1729, 1886, 2015, 2255, 2374
ApoI	RAATTY	4 cut(s)	1271, 2092, 2520, 2625
ArsI	GACNNNNNNTTYG	2 cut(s)	1495, 1527
AseI	ATTAAT	2 cut(s)	333, 1794
Asp700I	GAANNNNTTC	1 cut(s)	1098
AspLEI	GCGC	4 cut(s)	94, 822, 1739, 1779
AspS9I	GGNCC	4 cut(s)	111, 117, 1310, 2660
AsuC2I	CCSGG	3 cut(s)	67, 115, 1857
AsuHPI	GGTGA	3 cut(s)	170, 277, 2494
AsuII	TTCGAA	1 cut(s)	1942
AsuNHI	GCTAGC	1 cut(s)	1621
AvaII	GGWCC	1 cut(s)	111
BalI	TGGCCA	2 cut(s)	2271, 2598
BanII	GRGCYC	2 cut(s)	2118, 2175
BauI	CACGAG	2 cut(s)	903, 945
BbsI	GAAGAC	3 cut(s)	647, 672, 2382
Bbv12I	GWGCWC	1 cut(s)	2118
BbvI	GCAGC	6 cut(s)	466, 1741, 1898, 2002, 2242, 2386
BccI	CCATC	7 cut(s)	850, 1052, 1668, 1757, 2015, 2267, 2588
BceAI	ACGGC	6 cut(s)	128, 1238, 1324, 1690, 2414, 2661
BcgI	CGANNNNNNTGC	2 cut(s)	1151, 1185
BciT130I	CCWGG	4 cut(s)	516, 1458, 2176, 2664
BclI	TGATCA	2 cut(s)	147, 2512
BcnI	CCSGG	3 cut(s)	67, 115, 1857
BcoDI	GTCTC	7 cut(s)	301, 905, 990, 1067, 1387, 1510, 2030
BfaI	CTAG	7 cut(s)	776, 780, 1523, 1622, 1667, 2550, 2555
BfmI	CTRYAG	3 cut(s)	823, 1527, 2016
BfoI	RGCGCY	1 cut(s)	823
BfuAI	ACCTGC	1 cut(s)	630
BglI	GCCNNNNNGGC	3 cut(s)	48, 124, 2179
BisI	GCNGC	9 cut(s)	52, 168, 480, 1730, 1887, 1981, 2016, 2256, 2375
BlpI	GCTNAGC	2 cut(s)	1733, 1882
BlsI	GCNGC	9 cut(s)	53, 169, 481, 1731, 1888, 1982, 2017, 2257, 2376
BmcAI	AGTACT	1 cut(s)	2471
Bme1390I	CCNGG	7 cut(s)	67, 115, 516, 1458, 1857, 2176, 2664
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	4 cut(s)	111, 117, 1310, 2660
BmiI	GGNNCC	4 cut(s)	112, 113, 1704, 1974
BmrFI	CCNGG	7 cut(s)	67, 115, 516, 1458, 1857, 2176, 2664
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	1600
BmtI	GCTAGC	1 cut(s)	1625
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	3 cut(s)	647, 672, 2382
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 1865, 1897
BpmI	CTGGAG	4 cut(s)	537, 1161, 1257, 1299
Bpu1102I	GCTNAGC	2 cut(s)	1733, 1882
Bpu14I	TTCGAA	1 cut(s)	1942
BpuMI	CCSGG	3 cut(s)	67, 115, 1857
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	1650, 1656
BsaI	GGTCTC	4 cut(s)	301, 1067, 1510, 2030
BsaJI	CCNNGG	8 cut(s)	541, 815, 1869, 2174, 2394, 2662, 2663, 2677
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	1818, 1848
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 107, 108, 547, 791, 1725, 2657
Bse118I	RCCGGY	6 cut(s)	47, 54, 784, 834, 1652, 1927
Bse3DI	GCAATG	3 cut(s)	194, 694, 1746
Bse8I	GATNNNNATC	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	4 cut(s)	516, 1458, 2176, 2664
BseDI	CCNNGG	8 cut(s)	541, 815, 1869, 2174, 2394, 2662, 2663, 2677
BseGI	GGATG	4 cut(s)	842, 886, 1368, 1765
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	7 cut(s)	54, 107, 108, 547, 791, 1725, 2657
BseMI	GCAATG	3 cut(s)	194, 694, 1746
BseMII	CTCAG	3 cut(s)	665, 1297, 1896
BseRI	GAGGAG	6 cut(s)	180, 815, 935, 1055, 1158, 1551
BseX3I	CGGCCG	2 cut(s)	52, 1929
BseXI	GCAGC	6 cut(s)	466, 1741, 1898, 2002, 2242, 2386
Bsh1285I	CGRYCG	3 cut(s)	55, 249, 1932
BsiEI	CGRYCG	3 cut(s)	55, 249, 1932
BsiHKAI	GWGCWC	1 cut(s)	2118
BslFI	GGGAC	4 cut(s)	83, 97, 479, 2279
BslI	CCNNNNNNNGG	7 cut(s)	54, 107, 108, 547, 791, 1725, 2657
BsmAI	GTCTC	7 cut(s)	301, 905, 990, 1067, 1387, 1510, 2030
BsmBI	CGTCTC	1 cut(s)	990
BsmFI	GGGAC	4 cut(s)	83, 97, 479, 2279
BsmI	GAATGC	1 cut(s)	457
Bso31I	GGTCTC	4 cut(s)	301, 1067, 1510, 2030
Bsp119I	TTCGAA	1 cut(s)	1942
Bsp1286I	GDGCHC	2 cut(s)	2118, 2175
Bsp13I	TCCGGA	1 cut(s)	84
Bsp1720I	GCTNAGC	2 cut(s)	1733, 1882
Bsp19I	CCATGG	2 cut(s)	541, 1869
BspCNI	CTCAG	3 cut(s)	666, 1296, 1895
BspEI	TCCGGA	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	2515
BspLI	GGNNCC	4 cut(s)	112, 113, 1704, 1974
BspMAI	CTGCAG	1 cut(s)	2020
BspMI	ACCTGC	1 cut(s)	630
BspOI	GCTAGC	1 cut(s)	1625
BspPI	GGATC	8 cut(s)	139, 321, 352, 848, 1289, 1958, 2513, 2641
BspT104I	TTCGAA	1 cut(s)	1942
BspTNI	GGTCTC	4 cut(s)	301, 1067, 1510, 2030
BsrDI	GCAATG	3 cut(s)	194, 694, 1746
BsrFI	RCCGGY	6 cut(s)	47, 54, 784, 834, 1652, 1927
BssAI	RCCGGY	6 cut(s)	47, 54, 784, 834, 1652, 1927
BssECI	CCNNGG	8 cut(s)	541, 815, 1869, 2174, 2394, 2662, 2663, 2677
BssNAI	GTATAC	1 cut(s)	2216
BssNI	GRCGYC	2 cut(s)	1650, 1656
BssSI	CACGAG	2 cut(s)	903, 945
BssT1I	CCWWGG	3 cut(s)	541, 1869, 2394
Bst1107I	GTATAC	1 cut(s)	2216
Bst2BI	CACGAG	2 cut(s)	903, 945
Bst2UI	CCWGG	4 cut(s)	516, 1458, 2176, 2664
Bst4CI	ACNGT	4 cut(s)	493, 984, 1398, 1486
Bst6I	CTCTTC	3 cut(s)	1939, 2460, 2551
BstACI	GRCGYC	2 cut(s)	1650, 1656
BstBI	TTCGAA	1 cut(s)	1942
BstC8I	GCNNGC	7 cut(s)	49, 56, 836, 1227, 1623, 1654, 1696
BstDEI	CTNAG	5 cut(s)	674, 1283, 1733, 1786, 1882
BstDSI	CCRYGG	3 cut(s)	541, 1869, 2677
BstENI	CCTNNNNNAGG	1 cut(s)	2655
BstF5I	GGATG	4 cut(s)	842, 886, 1368, 1765
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	4 cut(s)	94, 822, 1739, 1779
BstMAI	GTCTC	7 cut(s)	301, 905, 990, 1067, 1387, 1510, 2030
BstMCI	CGRYCG	3 cut(s)	55, 249, 1932
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 124, 1226, 1928, 2170, 2179
BstNI	CCWGG	4 cut(s)	516, 1458, 2176, 2664
BstNSI	RCATGY	4 cut(s)	98, 1577, 1777, 2255
BstSCI	CCNGG	7 cut(s)	65, 113, 514, 1456, 1855, 2174, 2662
BstSFI	CTRYAG	3 cut(s)	823, 1527, 2016
BstV1I	GCAGC	6 cut(s)	466, 1741, 1898, 2002, 2242, 2386
BstV2I	GAAGAC	3 cut(s)	647, 672, 2382
BstX2I	RGATCY	3 cut(s)	853, 1294, 1963
BstYI	RGATCY	3 cut(s)	853, 1294, 1963
BstZ17I	GTATAC	1 cut(s)	2216
BstZI	CGGCCG	2 cut(s)	52, 1929
BtgI	CCRYGG	3 cut(s)	541, 1869, 2677
BtsCI	GGATG	4 cut(s)	842, 886, 1368, 1765
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	8 cut(s)	20, 177, 323, 376, 489, 1254, 1606, 1675
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	7 cut(s)	49, 56, 836, 1227, 1623, 1654, 1696
CaiI	CAGNNNCTG	2 cut(s)	22, 1322
CciI	TCATGA	1 cut(s)	2515
CfoI	GCGC	4 cut(s)	94, 822, 1739, 1779
Cfr10I	RCCGGY	6 cut(s)	47, 54, 784, 834, 1652, 1927
Cfr13I	GGNCC	4 cut(s)	111, 117, 1310, 2660
CseI	GACGC	2 cut(s)	1645, 1658
Csp6I	GTAC	2 cut(s)	2275, 2470
CspCI	CAANNNNNGTGG	2 cut(s)	2108, 2143
CviQI	GTAC	2 cut(s)	2275, 2470
DdeI	CTNAG	5 cut(s)	674, 1283, 1733, 1786, 1882
DraI	TTTAAA	1 cut(s)	2605
DrdI	GACNNNNNNGTC	1 cut(s)	1655
DseDI	GACNNNNNNGTC	1 cut(s)	1655
EaeI	YGGCCR	7 cut(s)	52, 832, 1929, 2269, 2427, 2596, 2674
EagI	CGGCCG	2 cut(s)	52, 1929
Eam1104I	CTCTTC	3 cut(s)	1939, 2460, 2551
EarI	CTCTTC	3 cut(s)	1939, 2460, 2551
Ecl136II	GAGCTC	1 cut(s)	2116
EclXI	CGGCCG	2 cut(s)	52, 1929
Eco130I	CCWWGG	3 cut(s)	541, 1869, 2394
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	2 cut(s)	2118, 2175
Eco31I	GGTCTC	4 cut(s)	301, 1067, 1510, 2030
Eco47I	GGWCC	1 cut(s)	111
Eco52I	CGGCCG	2 cut(s)	52, 1929
Eco53kI	GAGCTC	1 cut(s)	2116
Eco57I	CTGAAG	2 cut(s)	2226, 2640
EcoICRI	GAGCTC	1 cut(s)	2116
EcoNI	CCTNNNNNAGG	1 cut(s)	2655
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	2625
EcoRII	CCWGG	4 cut(s)	514, 1456, 2174, 2662
EcoT14I	CCWWGG	3 cut(s)	541, 1869, 2394
EcoT22I	ATGCAT	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	2118, 2175
ErhI	CCWWGG	3 cut(s)	541, 1869, 2394
Esp3I	CGTCTC	1 cut(s)	990
FalI	AAGNNNNNCTT	2 cut(s)	2530, 2562
FaqI	GGGAC	4 cut(s)	83, 97, 479, 2279
FauI	CCCGC	1 cut(s)	2379
FauNDI	CATATG	2 cut(s)	2011, 2635
FbaI	TGATCA	2 cut(s)	147, 2512
FblI	GTMKAC	1 cut(s)	2215
Fnu4HI	GCNGC	9 cut(s)	52, 168, 480, 1730, 1887, 1981, 2016, 2256, 2375
FokI	GGATG	4 cut(s)	829, 873, 1375, 1752
FriOI	GRGCYC	2 cut(s)	2118, 2175
FseI	GGCCGGCC	1 cut(s)	838
Fsp4HI	GCNGC	9 cut(s)	52, 168, 480, 1730, 1887, 1981, 2016, 2256, 2375
FspBI	CTAG	7 cut(s)	776, 780, 1523, 1622, 1667, 2550, 2555
GlaI	GCGC	4 cut(s)	93, 821, 1738, 1778
GluI	GCNGC	9 cut(s)	52, 168, 480, 1730, 1887, 1981, 2016, 2256, 2375
GsuI	CTGGAG	4 cut(s)	537, 1161, 1257, 1299
HaeII	RGCGCY	1 cut(s)	823
HgaI	GACGC	2 cut(s)	1645, 1658
HhaI	GCGC	4 cut(s)	94, 822, 1739, 1779
Hin1I	GRCGYC	2 cut(s)	1650, 1656
Hin6I	GCGC	4 cut(s)	92, 820, 1737, 1777
HinP1I	GCGC	4 cut(s)	92, 820, 1737, 1777
HincII	GTYRAC	2 cut(s)	63, 2249
HindII	GTYRAC	2 cut(s)	63, 2249
HindIII	AAGCTT	3 cut(s)	180, 960, 1227
HphI	GGTGA	3 cut(s)	170, 277, 2494
Hpy166II	GTNNAC	7 cut(s)	63, 611, 739, 1252, 1306, 2216, 2249
Hpy8I	GTNNAC	7 cut(s)	63, 611, 739, 1252, 1306, 2216, 2249
HpyCH4III	ACNGT	4 cut(s)	493, 984, 1398, 1486
HpyCH4IV	ACGT	1 cut(s)	2074
HpyCH4V	TGCA	8 cut(s)	8, 199, 1220, 1698, 1744, 1799, 1805, 2018
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 124, 1226, 1928, 2170, 2179
HpyF3I	CTNAG	5 cut(s)	674, 1283, 1733, 1786, 1882
HpySE526I	ACGT	1 cut(s)	2074
Hsp92I	GRCGYC	2 cut(s)	1650, 1656
HspAI	GCGC	4 cut(s)	92, 820, 1737, 1777
KflI	GGGWCCC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	84
KroI	GCCGGC	4 cut(s)	47, 54, 834, 1652
KroNI	GCCGGC	4 cut(s)	49, 56, 836, 1654
Ksp22I	TGATCA	2 cut(s)	147, 2512
LmnI	GCTCC	7 cut(s)	87, 518, 581, 972, 1702, 2121, 2618
Lsp1109I	GCAGC	6 cut(s)	466, 1741, 1898, 2002, 2242, 2386
LweI	GCATC	1 cut(s)	1600
MaeI	CTAG	7 cut(s)	776, 780, 1523, 1622, 1667, 2550, 2555
MaeII	ACGT	1 cut(s)	2074
MaeIII	GTNAC	8 cut(s)	158, 265, 388, 500, 529, 978, 2098, 2668
MflI	RGATCY	3 cut(s)	853, 1294, 1963
MhlI	GDGCHC	2 cut(s)	2118, 2175
MlsI	TGGCCA	2 cut(s)	2271, 2598
MluNI	TGGCCA	2 cut(s)	2271, 2598
MlyI	GAGTC	2 cut(s)	1248, 1681
MmeI	TCCRAC	1 cut(s)	543
Mox20I	TGGCCA	2 cut(s)	2271, 2598
Mph1103I	ATGCAT	1 cut(s)	10
MreI	CGCCGGCG	2 cut(s)	47, 1652
MroI	TCCGGA	1 cut(s)	84
MroNI	GCCGGC	4 cut(s)	47, 54, 834, 1652
MroXI	GAANNNNTTC	1 cut(s)	1098
MscI	TGGCCA	2 cut(s)	2271, 2598
MslI	CAYNNNNRTG	1 cut(s)	1955
Msp20I	TGGCCA	2 cut(s)	2271, 2598
MspA1I	CMGCKG	1 cut(s)	153
MspR9I	CCNGG	7 cut(s)	67, 115, 516, 1458, 1857, 2176, 2664
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	4 cut(s)	516, 1458, 2176, 2664
MwoI	GCNNNNNNNGC	6 cut(s)	48, 124, 1226, 1928, 2170, 2179
NaeI	GCCGGC	4 cut(s)	49, 56, 836, 1654
NciI	CCSGG	3 cut(s)	67, 115, 1857
NcoI	CCATGG	2 cut(s)	541, 1869
NdeI	CATATG	2 cut(s)	2011, 2635
NgoMIV	GCCGGC	4 cut(s)	47, 54, 834, 1652
NheI	GCTAGC	1 cut(s)	1621
NlaIV	GGNNCC	4 cut(s)	112, 113, 1704, 1974
NmeAIII	GCCGAG	1 cut(s)	796
NmuCI	GTSAC	4 cut(s)	158, 265, 500, 2098
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	4 cut(s)	98, 1577, 1777, 2255
NspV	TTCGAA	1 cut(s)	1942
PagI	TCATGA	1 cut(s)	2515
PasI	CCCWGGG	1 cut(s)	2663
PceI	AGGCCT	1 cut(s)	808
PciI	ACATGT	1 cut(s)	1573
PctI	GAATGC	1 cut(s)	457
PdiI	GCCGGC	4 cut(s)	49, 56, 836, 1654
PdmI	GAANNNNTTC	1 cut(s)	1098
PfoI	TCCNGGA	2 cut(s)	514, 1855
PkrI	GCNGC	9 cut(s)	53, 169, 481, 1731, 1888, 1982, 2017, 2257, 2376
Ple19I	CGATCG	1 cut(s)	249
PleI	GAGTC	2 cut(s)	1247, 1681
PpsI	GAGTC	2 cut(s)	1247, 1681
PpuMI	RGGWCCY	1 cut(s)	111
PscI	ACATGT	1 cut(s)	1573
PshBI	ATTAAT	2 cut(s)	333, 1794
PsiI	TTATAA	1 cut(s)	1178
Psp124BI	GAGCTC	1 cut(s)	2118
Psp1406I	AACGTT	1 cut(s)	2074
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	4 cut(s)	514, 1456, 2174, 2662
PspGI	CCWGG	4 cut(s)	514, 1456, 2174, 2662
PspN4I	GGNNCC	4 cut(s)	112, 113, 1704, 1974
PspPI	GGNCC	4 cut(s)	111, 117, 1310, 2660
PspPPI	RGGWCCY	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	2415, 2447
PstI	CTGCAG	1 cut(s)	2020
PstNI	CAGNNNCTG	2 cut(s)	22, 1322
PsuI	RGATCY	3 cut(s)	853, 1294, 1963
PvuI	CGATCG	1 cut(s)	249
RigI	GGCCGGCC	1 cut(s)	838
RsaI	GTAC	2 cut(s)	2276, 2471
RsaNI	GTAC	2 cut(s)	2275, 2470
RseI	CAYNNNNRTG	1 cut(s)	1955
SacI	GAGCTC	1 cut(s)	2118
SatI	GCNGC	9 cut(s)	52, 168, 480, 1730, 1887, 1981, 2016, 2256, 2375
Sau96I	GGNCC	4 cut(s)	111, 117, 1310, 2660
ScaI	AGTACT	1 cut(s)	2471
SchI	GAGTC	2 cut(s)	1248, 1681
ScrFI	CCNGG	7 cut(s)	67, 115, 516, 1458, 1857, 2176, 2664
SduI	GDGCHC	2 cut(s)	2118, 2175
SfaNI	GCATC	1 cut(s)	1600
SfcI	CTRYAG	3 cut(s)	823, 1527, 2016
SfuI	TTCGAA	1 cut(s)	1942
SgrAI	CRCCGGYG	2 cut(s)	47, 1652
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	1955
SseBI	AGGCCT	1 cut(s)	808
SspMI	CTAG	7 cut(s)	776, 780, 1523, 1622, 1667, 2550, 2555
SstI	GAGCTC	1 cut(s)	2118
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	7 cut(s)	65, 113, 514, 1456, 1855, 2174, 2662
StyI	CCWWGG	3 cut(s)	541, 1869, 2394
TaaI	ACNGT	4 cut(s)	493, 984, 1398, 1486
TaiI	ACGT	1 cut(s)	2077
TaqI	TCGA	5 cut(s)	249, 658, 876, 1839, 1942
TatI	WGTACW	1 cut(s)	2469
TauI	GCSGC	3 cut(s)	54, 170, 1983
TscAI	CASTG	8 cut(s)	27, 177, 323, 376, 496, 1254, 1613, 1682
TseFI	GTSAC	4 cut(s)	158, 265, 500, 2098
TseI	GCWGC	6 cut(s)	479, 1729, 1886, 2015, 2255, 2374
Tsp45I	GTSAC	4 cut(s)	158, 265, 500, 2098
TspGWI	ACGGA	2 cut(s)	878, 1495
TspRI	CASTG	8 cut(s)	27, 177, 323, 376, 496, 1254, 1613, 1682
VpaK11BI	GGWCC	1 cut(s)	111
VspI	ATTAAT	2 cut(s)	333, 1794
XagI	CCTNNNNNAGG	1 cut(s)	2655
XapI	RAATTY	4 cut(s)	1271, 2092, 2520, 2625
XbaI	TCTAGA	1 cut(s)	2549
XceI	RCATGY	4 cut(s)	98, 1577, 1777, 2255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2279, 2422
XmiI	GTMKAC	1 cut(s)	2215
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	7 cut(s)	776, 780, 1523, 1622, 1667, 2550, 2555
ZrmI	AGTACT	1 cut(s)	2471
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.