Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009570

Physical Location & Seq

Genomic Coordinates Reverse (-)

20532423 .. 20541280

Gene Structure 8858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1213700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGATTACCTGAAATCCGTGGTCCCTTCACAGCTGCTCTCCGAACGAGGCTCCAACCTGGTCGTCATCAACCCAGTTCAGGTTCTGCAAACATTAGAATTGGCTTGCTTCGAAGGACACCCCTCTAAATATTCCCCATTGCATTGCGAGGCACACCACACAAGAACACAGGAGAAATGTTCAAGACCAGTTGCGACTACGCTGTACAAGGACCGCCAAAAGGCTTATGATATGATTGCATCGTTCTTGAAGATACCATTTATAGATAAAGAGGTTGCTAACAATTCTTACCCACGCAAGATGGGACACATTGATGGACTTAAACCACATAATAGTAGAAAGGACACAGCATTGGATTGGACAGATGTATATGAAAAGGAACCTAGTTCGTCTTCAGCATTAGAAAGTTCAGAGAACAAAAGCACTACTAGTGAGGGTTTGAGCCAGCATGAAGGTGCAGATACTGAGGAGCTTGGCTCTGGCAATCACAAATACAAAAAGGTCATTTATGGTGAGGAAGCACTAAAAATATCCCCACAGCGGCCGTATCCGTGTCCGTGTCGGCGGCGTATTGGAGGCATGTCCAAGCCGTTGACCGGTGTCTTGACTGTGTCCAACTCGTGTCAGGGGCGTATCAGAGGCGTGTCAGAGTTGTCCGTGCAACCTAGCACGGAAGGTCTAGCTGCTTTTGGGAATGGATTATCAACAGCATGTGTCATTAAGATGGGTGCTCAGGTGACATCAGTTATTTGCATTGAGCACAGCTGGATTATGCCTAAATCGGGTAGAGTTGGTCTTCCACTTTGGTCTTCCACTTATGATAATGTATCAGTTGTCTCTTCTATTGTCCACGATGGAGCAGCTTTACCTAATACAGAGAAAACTTTACCTTTTGGTGGAGAGGACATATCAAGATGCCTTCTTTGGACTCAGAGACATCATCAGACATGGCCACAAATTCGTACTGACATGTTCACCAAGCTGATAGATCTCTTGATGCGTAACAGACTAAAAGAGTCTTATTGTGAGATTAAAGAGGGGGAACTAGATGCTGTTGGTGTAGTTCATTCTTATGAAGATGGTATGCCAGCTGGATCTCGTAAGACAAGATTAACTGCTCTCAATGTGCATGCATATCCTCCTCCTCCCGGTGTTTGGTTTCGTGACTATGAGGACTTGCTAGAAGATACATGGCACATGGAATTTCCCAGAAGACCTGAAATGTCAGATAGCTTGTTTCCCAACATGAACACCGGGTATCCAATGTGGGATGGCTACCCAGCTTTTTCAGCTAAACCAAAGAAAGAAGAAAAAGTTGGCCTTGCAGAAGCCATAACAAGTAGCATTCTTTCAACAGGTTGGTGGAGTGGCTTCAACAAGAGGTCTTGTTCCTGCAGTGGAGGAAAGTTTCCACTCATGCAGGCGATGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

479

Amino Acids

53.3

Weight (kDa)

7.58

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43500 AT5G43500 AT5G43500 AT5G43500
fragaria_vesca	FvH4_4g03210
malus_domestica	MD13G1210600.v1.1 MD16G1213700.v1.1
prunus_persica	Prupe.1G035000_v2.0.a1 Prupe.1G035000_v2.0.a1 Prupe.1G035000_v2.0.a1 Prupe.1G035000_v2.0.a1
pyrus_communis	pycom13g18300
rosa_chinensis	RchiOBHm_Chr4g0391871
rosa_laevigata	RLG00000009853
rosa_multiflora	Rmu_sc0007693.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337190
rosa_rugosa	Rorug03G0336600
rosa_samantha	Rh4AG039000 Rh4BG033600 Rh4CG041600 Rh4DG036500
rosa_wichuraiana	Rw4G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	214, 541, 565
AclWI	GGATC	1 cut(s)	1102
AcoI	YGGCCR	2 cut(s)	542, 950
AcsI	RAATTY	2 cut(s)	957, 1202
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	206, 964
AfiI	CCNNNNNNNGG	8 cut(s)	79, 220, 540, 596, 782, 896, 1148, 1155
AflIII	ACRYGT	1 cut(s)	969
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	183, 250, 1353, 1375
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	1299, 1331
Alw21I	GWGCWC	2 cut(s)	733, 762
Alw26I	GTCTC	2 cut(s)	841, 928
AlwI	GGATC	1 cut(s)	1102
AlwNI	CAGNNNCTG	2 cut(s)	85, 464
AoxI	GGCC	3 cut(s)	542, 950, 1318
ApeKI	GCWGC	3 cut(s)	34, 683, 860
ApoI	RAATTY	2 cut(s)	957, 1202
AsiGI	ACCGGT	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	22, 211
AsuC2I	CCSGG	2 cut(s)	1149, 1255
AsuHPI	GGTGA	3 cut(s)	524, 748, 967
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	22, 211
BalI	TGGCCA	1 cut(s)	952
BauI	CACGAG	1 cut(s)	619
BbsI	GAAGAC	4 cut(s)	384, 788, 801, 1219
Bbv12I	GWGCWC	2 cut(s)	733, 762
BbvI	GCAGC	3 cut(s)	21, 670, 872
BccI	CCATC	6 cut(s)	295, 308, 718, 848, 1073, 1265
BceAI	ACGGC	2 cut(s)	529, 574
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	2 cut(s)	558, 1269
BcnI	CCSGG	2 cut(s)	1149, 1255
BcoDI	GTCTC	2 cut(s)	841, 928
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	6 cut(s)	384, 429, 666, 680, 1046, 1181
BfmI	CTRYAG	1 cut(s)	1393
BfuI	GTATCC	2 cut(s)	558, 1269
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	5 cut(s)	35, 542, 566, 684, 861
BlsI	GCNGC	5 cut(s)	36, 543, 567, 685, 862
Bme1390I	CCNGG	3 cut(s)	59, 1149, 1255
Bme18I	GGWCC	2 cut(s)	22, 211
BmgT120I	GGNCC	2 cut(s)	22, 211
BmiI	GGNNCC	3 cut(s)	24, 52, 381
BmrFI	CCNGG	3 cut(s)	59, 1149, 1255
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	4 cut(s)	248, 905, 987, 1039
BmuI	ACTGGG	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	599
BpiI	GAAGAC	4 cut(s)	384, 788, 801, 1219
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu14I	TTCGAA	1 cut(s)	111
BpuMI	CCSGG	2 cut(s)	1149, 1255
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	8 cut(s)	79, 220, 540, 596, 782, 896, 1148, 1155
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	74, 188
Bse3DI	GCAATG	2 cut(s)	137, 142
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	1276
BseLI	CCNNNNNNNGG	8 cut(s)	79, 220, 540, 596, 782, 896, 1148, 1155
BseMI	GCAATG	2 cut(s)	137, 142
BseMII	CTCAG	3 cut(s)	456, 746, 944
BseNI	ACTGG	2 cut(s)	74, 188
BseRI	GAGGAG	3 cut(s)	482, 1131, 1134
BseX3I	CGGCCG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	21, 670, 872
BseYI	CCCAGC	1 cut(s)	1279
BsgI	GTGCAG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	3 cut(s)	544, 952, 1320
BshTI	ACCGGT	1 cut(s)	596
BsiEI	CGRYCG	1 cut(s)	545
BsiHKAI	GWGCWC	2 cut(s)	733, 762
BsiSI	CCGG	3 cut(s)	597, 1149, 1254
BslFI	GGGAC	2 cut(s)	8, 318
BslI	CCNNNNNNNGG	8 cut(s)	79, 220, 540, 596, 782, 896, 1148, 1155
BsmAI	GTCTC	2 cut(s)	841, 928
BsmFI	GGGAC	2 cut(s)	8, 318
BsmI	GAATGC	1 cut(s)	1344
BsnI	GGCC	3 cut(s)	544, 952, 1320
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	733, 762
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	988, 1094
BspACI	CCGC	3 cut(s)	214, 541, 565
BspANI	GGCC	3 cut(s)	544, 952, 1320
BspCNI	CTCAG	3 cut(s)	457, 745, 943
BspLI	GGNNCC	3 cut(s)	24, 52, 381
BspMAI	CTGCAG	1 cut(s)	1397
BspPI	GGATC	1 cut(s)	1102
BspT104I	TTCGAA	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	137, 142
BsrFI	RCCGGY	1 cut(s)	596
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	74, 188
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	988, 1094
BssSI	CACGAG	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	844
BstAUI	TGTACA	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	5 cut(s)	106, 446, 1089, 1131, 1422
BstDEI	CTNAG	3 cut(s)	465, 732, 930
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	1276
BstKTI	GATC	2 cut(s)	991, 1097
BstMAI	GTCTC	2 cut(s)	841, 928
BstMBI	GATC	2 cut(s)	988, 1094
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	1 cut(s)	1289
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	4 cut(s)	583, 714, 973, 1133
BstPAI	GACNNNNGTC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	57, 1147, 1253
BstSFI	CTRYAG	1 cut(s)	1393
BstV1I	GCAGC	3 cut(s)	21, 670, 872
BstV2I	GAAGAC	4 cut(s)	384, 788, 801, 1219
BstX2I	RGATCY	2 cut(s)	988, 1094
BstYI	RGATCY	2 cut(s)	988, 1094
BstZI	CGGCCG	1 cut(s)	542
BsuI	GTATCC	2 cut(s)	558, 1269
BsuRI	GGCC	3 cut(s)	544, 952, 1320
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	1276
BtsI	GCAGTG	1 cut(s)	1402
BtsIMutI	CAGTG	1 cut(s)	1402
Cac8I	GCNNGC	5 cut(s)	106, 446, 1089, 1131, 1422
CaiI	CAGNNNCTG	2 cut(s)	85, 464
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	22, 211
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	205, 963
CspAI	ACCGGT	1 cut(s)	596
CviQI	GTAC	2 cut(s)	205, 963
DdeI	CTNAG	3 cut(s)	465, 732, 930
DpnI	GATC	2 cut(s)	990, 1096
DpnII	GATC	2 cut(s)	988, 1094
EaeI	YGGCCR	2 cut(s)	542, 950
EagI	CGGCCG	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	844
EarI	CTCTTC	1 cut(s)	844
EclXI	CGGCCG	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	22, 211
Eco52I	CGGCCG	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	1135
FalI	AAGNNNNNCTT	2 cut(s)	1305, 1337
FaqI	GGGAC	2 cut(s)	8, 318
Fnu4HI	GCNGC	5 cut(s)	35, 542, 566, 684, 861
FokI	GGATG	1 cut(s)	1283
Fsp4HI	GCNGC	5 cut(s)	35, 542, 566, 684, 861
FspBI	CTAG	6 cut(s)	384, 429, 666, 680, 1046, 1181
GluI	GCNGC	5 cut(s)	35, 542, 566, 684, 861
GsaI	CCCAGC	1 cut(s)	1283
HaeIII	GGCC	3 cut(s)	544, 952, 1320
HapII	CCGG	3 cut(s)	597, 1149, 1254
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	2 cut(s)	928, 1016
HpaII	CCGG	3 cut(s)	597, 1149, 1254
HphI	GGTGA	3 cut(s)	524, 748, 967
Hpy166II	GTNNAC	3 cut(s)	594, 850, 975
Hpy188I	TCNGA	7 cut(s)	43, 412, 638, 649, 933, 945, 1228
Hpy188III	TCNNGA	6 cut(s)	183, 247, 604, 912, 994, 1163
Hpy8I	GTNNAC	3 cut(s)	594, 850, 975
HpyAV	CCTTC	5 cut(s)	36, 107, 446, 668, 929
HpyCH4III	ACNGT	1 cut(s)	610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1289
HpyF3I	CTNAG	3 cut(s)	465, 732, 930
Kzo9I	GATC	2 cut(s)	988, 1094
LmnI	GCTCC	3 cut(s)	56, 469, 857
Lsp1109I	GCAGC	3 cut(s)	21, 670, 872
LweI	GCATC	4 cut(s)	248, 905, 987, 1039
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	6 cut(s)	384, 429, 666, 680, 1046, 1181
MaeIII	GTNAC	3 cut(s)	736, 1001, 1163
MalI	GATC	2 cut(s)	990, 1096
MboI	GATC	2 cut(s)	988, 1094
MboII	GAAGA	9 cut(s)	262, 384, 788, 801, 831, 1088, 1196, 1224, 1319
MflI	RGATCY	2 cut(s)	988, 1094
MhlI	GDGCHC	2 cut(s)	733, 762
MlsI	TGGCCA	1 cut(s)	952
MluCI	AATT	4 cut(s)	98, 283, 957, 1202
MluNI	TGGCCA	1 cut(s)	952
MlyI	GAGTC	2 cut(s)	922, 1025
MmeI	TCCRAC	2 cut(s)	78, 639
Mox20I	TGGCCA	1 cut(s)	952
Mph1103I	ATGCAT	1 cut(s)	1135
MscI	TGGCCA	1 cut(s)	952
MseI	TTAA	4 cut(s)	321, 720, 1032, 1112
MslI	CAYNNNNRTG	4 cut(s)	312, 453, 722, 1071
Msp20I	TGGCCA	1 cut(s)	952
MspA1I	CMGCKG	4 cut(s)	34, 541, 765, 1091
MspI	CCGG	3 cut(s)	597, 1149, 1254
MspR9I	CCNGG	3 cut(s)	59, 1149, 1255
Mva1269I	GAATGC	1 cut(s)	1344
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	1289
NciI	CCSGG	2 cut(s)	1149, 1255
NdeII	GATC	2 cut(s)	988, 1094
NlaIV	GGNNCC	3 cut(s)	24, 52, 381
NmuCI	GTSAC	2 cut(s)	736, 1163
NsiI	ATGCAT	1 cut(s)	1135
NspI	RCATGY	4 cut(s)	583, 714, 973, 1133
NspV	TTCGAA	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	1133
PciI	ACATGT	1 cut(s)	969
PctI	GAATGC	1 cut(s)	1344
PflFI	GACNNNGTC	1 cut(s)	610
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	5 cut(s)	36, 543, 567, 685, 862
PleI	GAGTC	2 cut(s)	922, 1024
PpsI	GAGTC	2 cut(s)	922, 1024
PscI	ACATGT	1 cut(s)	969
PshAI	GACNNNNGTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	1279
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	24, 52, 381
PspPI	GGNCC	2 cut(s)	22, 211
PstI	CTGCAG	1 cut(s)	1397
PstNI	CAGNNNCTG	2 cut(s)	85, 464
PsuI	RGATCY	2 cut(s)	988, 1094
PsyI	GACNNNGTC	1 cut(s)	610
PvuII	CAGCTG	3 cut(s)	34, 765, 1091
RsaI	GTAC	2 cut(s)	206, 964
RsaNI	GTAC	2 cut(s)	205, 963
RseI	CAYNNNNRTG	4 cut(s)	312, 453, 722, 1071
SaqAI	TTAA	4 cut(s)	321, 720, 1032, 1112
SatI	GCNGC	5 cut(s)	35, 542, 566, 684, 861
Sau3AI	GATC	2 cut(s)	988, 1094
Sau96I	GGNCC	2 cut(s)	22, 211
SchI	GAGTC	2 cut(s)	922, 1025
ScrFI	CCNGG	3 cut(s)	59, 1149, 1255
SduI	GDGCHC	2 cut(s)	733, 762
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	4 cut(s)	248, 905, 987, 1039
SfcI	CTRYAG	1 cut(s)	1393
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	22, 211
SmiMI	CAYNNNNRTG	4 cut(s)	312, 453, 722, 1071
SpeI	ACTAGT	1 cut(s)	428
SphI	GCATGC	1 cut(s)	1133
Sse9I	AATT	4 cut(s)	98, 283, 957, 1202
SsiI	CCGC	3 cut(s)	214, 541, 565
SspI	AATATT	1 cut(s)	131
SspMI	CTAG	6 cut(s)	384, 429, 666, 680, 1046, 1181
StyD4I	CCNGG	3 cut(s)	57, 1147, 1253
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	98, 283, 957, 1202
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	544, 568
Tru1I	TTAA	4 cut(s)	321, 720, 1032, 1112
Tru9I	TTAA	4 cut(s)	321, 720, 1032, 1112
TscAI	CASTG	1 cut(s)	1402
TseFI	GTSAC	2 cut(s)	736, 1163
TseI	GCWGC	3 cut(s)	34, 683, 860
Tsp45I	GTSAC	2 cut(s)	736, 1163
TspDTI	ATGAA	5 cut(s)	387, 465, 1055, 1089, 1262
TspGWI	ACGGA	5 cut(s)	7, 540, 546, 646, 686
TspRI	CASTG	1 cut(s)	1402
Tth111I	GACNNNGTC	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	22, 211
XapI	RAATTY	2 cut(s)	957, 1202
XceI	RCATGY	4 cut(s)	583, 714, 973, 1133
XspI	CTAG	6 cut(s)	384, 429, 666, 680, 1046, 1181
Zsp2I	ATGCAT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.