Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010257

Physical Location & Seq

Genomic Coordinates Forward (+)

36101686 .. 36102654

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1273100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTTTCTGAGATGAGGTGTTATGGGTTTGAACTAACTCAGTATGTGTTTGGTGGGTTGTTGACATGTGGGTCATTGGATGTTTATCATGCGGTTCAGTTGCATTCTTTGGTAATAAGGAATGGTCTGTTTGATGTCGATGCTTTTGTGGGGACTTCGTTGTTGGGTTTTTACGGAAGGCATGGGTTGTTAAAGGAAGCGGTTAGGGCATTTGAAGATATACCTTGTAAGAGCTTGGTCACATGGAATTCAGTGATATCTGTGCTTGGGAATCATGGGTTTGCTGATTATAGTGTGGTGTTAGTTCGAGAACTTGCGAGAAAGAATTATACTTTGTCTGTAGGTTCTTTTGTGGGTGTTTTTTTGGGCATTTTCATGCCAACAGGACTTGGGATTGGGGAACAACTGCGTTCTTTAGTCATAAAGAATGGTTTTAAGTGTGAAATTCTTGTGGTGAATTCTATTATGAGTATGTACGTGAAATGCACTGACATATGCTCGGCTGAGAAAGTTTTGGATGAGGCTACTATTCAGGATGTTGTATCATGGTATACTTTCATTGGTGCAGTAGCAAAAACTGAGAGATCTTGGAAAGCACTCAAATTCTTCTCCAAAATGTCCATGGATGCAGTATTGCCTAGTGAGATCACATTTGTCAGCCGTATAAACTATTGTAACCATTTGGAGCTGCCGTGCTATGGCGAGTCTTTTCATGCTAAGATAATCCATAATGCTTTTGAATCTAATGTTTTTGTAGGTAGTGCACTGATTGACTTTTATGTTAACTGTAGTAACTTAAACAATGCCCATCGCTGTTTTAATGAGATATATGCGAAAAATGTGGTTTCCTGGAATGCTTTGATTTGGGGATACTTTAATAGAAAAACTAATGAAAAGGGCTTCAAATCTTTACATTTTAATAAAAAATCACCCACTAACCTTATTTTAATAATAAGGACAAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

323

Amino Acids

36.25

Weight (kDa)

8.45

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58590
fragaria_vesca	FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060
malus_domestica	MD16G1272700.v1.1 MD16G1273100.v1.1
prunus_persica	Prupe.5G034200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0128951
rosa_laevigata	RLG00000019042
rosa_multiflora	Rmu_sc0002696.1_g000005
rosa_roxburghii	Rroxscaffold_2G00115030
rosa_rugosa	Rorug02G0283400
rosa_samantha	Rh2AG335300 Rh2BG343400 Rh2CG322100 Rh2DG359900
rosa_wichuraiana	Rw2G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	551
AciI	CCGC	2 cut(s)	92, 200
AcsI	RAATTY	4 cut(s)	247, 444, 457, 602
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	32, 215, 740, 904
AjnI	CCWGG	1 cut(s)	848
AluBI	AGCT	2 cut(s)	234, 688
AluI	AGCT	2 cut(s)	234, 688
Alw21I	GWGCWC	1 cut(s)	766
Alw44I	GTGCAC	1 cut(s)	762
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	4 cut(s)	247, 444, 457, 602
AsuHPI	GGTGA	2 cut(s)	466, 921
BaeGI	GKGCMC	1 cut(s)	766
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	1 cut(s)	816
BceAI	ACGGC	2 cut(s)	645, 676
BciT130I	CCWGG	1 cut(s)	850
BciVI	GTATCC	1 cut(s)	863
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	2 cut(s)	339, 787
BfuI	GTATCC	1 cut(s)	863
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	1 cut(s)	689
BlsI	GCNGC	1 cut(s)	690
Bme1390I	CCNGG	1 cut(s)	850
BmrFI	CCNGG	1 cut(s)	850
BmsI	GCATC	2 cut(s)	130, 616
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	850
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	4 cut(s)	85, 523, 541, 631
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMII	CTCAG	3 cut(s)	53, 495, 570
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	1 cut(s)	675
BsgI	GTGCAG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	766
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	103, 859
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	584, 645
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	2 cut(s)	92, 200
BspCNI	CTCAG	3 cut(s)	52, 496, 571
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	2 cut(s)	584, 645
BssNAI	GTATAC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	850
Bst4CI	ACNGT	1 cut(s)	788
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	5 cut(s)	9, 39, 504, 579, 717
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	85, 523, 541, 631
BstKTI	GATC	2 cut(s)	587, 648
BstMBI	GATC	2 cut(s)	584, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	850
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	848
BstSFI	CTRYAG	2 cut(s)	339, 787
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BstZ17I	GTATAC	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	863
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	794
BtsCI	GGATG	4 cut(s)	85, 523, 541, 631
BtsIMutI	CAGTG	3 cut(s)	258, 486, 764
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	9 cut(s)	66, 89, 182, 243, 275, 376, 546, 622, 713
CviJI	RGCY	6 cut(s)	234, 503, 524, 660, 688, 900
CviKI_1	RGCY	6 cut(s)	234, 503, 524, 660, 688, 900
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	5 cut(s)	9, 39, 504, 579, 717
DpnI	GATC	2 cut(s)	586, 647
DpnII	GATC	2 cut(s)	584, 645
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	258
EcoRI	GAATTC	2 cut(s)	247, 457
EcoRII	CCWGG	1 cut(s)	848
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	9 cut(s)	69, 92, 185, 246, 278, 379, 549, 625, 716
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	9 cut(s)	65, 88, 181, 242, 274, 375, 545, 621, 712
FauNDI	CATATG	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	1 cut(s)	689
FokI	GGATG	4 cut(s)	92, 530, 548, 638
Fsp4HI	GCNGC	1 cut(s)	689
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	1 cut(s)	689
Hin1II	CATG	9 cut(s)	69, 92, 185, 246, 278, 379, 549, 625, 716
HincII	GTYRAC	2 cut(s)	63, 784
HindII	GTYRAC	2 cut(s)	63, 784
HinfI	GANTC	3 cut(s)	271, 704, 740
HpaI	GTTAAC	1 cut(s)	784
HphI	GGTGA	2 cut(s)	466, 921
Hpy166II	GTNNAC	4 cut(s)	63, 552, 764, 784
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	308, 533
Hpy8I	GTNNAC	4 cut(s)	63, 552, 764, 784
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	103, 486, 566, 629, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	5 cut(s)	9, 39, 504, 579, 717
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	9 cut(s)	69, 92, 185, 246, 278, 379, 549, 625, 716
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	584, 645
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	4 cut(s)	369, 518, 835, 862
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	2 cut(s)	130, 616
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	238, 674, 791
MalI	GATC	2 cut(s)	586, 647
MboI	GATC	2 cut(s)	584, 645
MboII	GAAGA	2 cut(s)	227, 598
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	5 cut(s)	247, 325, 444, 457, 602
MlyI	GAGTC	1 cut(s)	713
MnlI	CCTC	2 cut(s)	9, 514
MseI	TTAA	8 cut(s)	191, 435, 783, 797, 819, 876, 918, 947
MslI	CAYNNNNRTG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	850
Mva1269I	GAATGC	2 cut(s)	103, 859
MvaI	CCWGG	1 cut(s)	850
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	2 cut(s)	584, 645
NlaIII	CATG	9 cut(s)	69, 92, 185, 246, 278, 379, 549, 625, 716
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	69
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	2 cut(s)	103, 859
PfeI	GAWTC	2 cut(s)	271, 740
PfoI	TCCNGGA	1 cut(s)	848
PkrI	GCNGC	1 cut(s)	690
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	8 cut(s)	191, 435, 783, 797, 819, 876, 918, 947
SatI	GCNGC	1 cut(s)	689
Sau3AI	GATC	2 cut(s)	584, 645
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	850
SduI	GDGCHC	1 cut(s)	766
SetI	ASST	8 cut(s)	20, 226, 236, 346, 480, 690, 760, 942
SfaNI	GCATC	2 cut(s)	130, 616
SfcI	CTRYAG	2 cut(s)	339, 787
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	5 cut(s)	247, 325, 444, 457, 602
SsiI	CCGC	2 cut(s)	92, 200
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	848
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	138, 307
TasI	AATT	5 cut(s)	247, 325, 444, 457, 602
TfiI	GAWTC	2 cut(s)	271, 740
Tru1I	TTAA	8 cut(s)	191, 435, 783, 797, 819, 876, 918, 947
Tru9I	TTAA	8 cut(s)	191, 435, 783, 797, 819, 876, 918, 947
TscAI	CASTG	3 cut(s)	258, 493, 771
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	364, 547, 701, 906
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	258, 493, 771
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	4 cut(s)	247, 444, 457, 602
XceI	RCATGY	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	551
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.