Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58590 |
| fragaria_vesca | FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 FvH4_6g27060 |
| malus_domestica | MD16G1272700.v1.1 MD16G1273100.v1.1 |
| prunus_persica | Prupe.5G034200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0128951 |
| rosa_laevigata | RLG00000019042 |
| rosa_multiflora | Rmu_sc0002696.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00115030 |
| rosa_rugosa | Rorug02G0283400 |
| rosa_samantha | Rh2AG335300 Rh2BG343400 Rh2CG322100 Rh2DG359900 |
| rosa_wichuraiana | Rw2G027190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 605, 1241 |
| Acc36I | ACCTGC | 1 cut(s) | 228 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 881, 1930 |
| AccI | GTMKAC | 2 cut(s) | 1081, 1250 |
| AciI | CCGC | 2 cut(s) | 563, 1429 |
| AclI | AACGTT | 2 cut(s) | 117, 1620 |
| AclWI | GGATC | 1 cut(s) | 1923 |
| AcoI | YGGCCR | 2 cut(s) | 1426, 1490 |
| AcsI | RAATTY | 6 cut(s) | 430, 575, 627, 640, 692, 1326 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AfaI | GTAC | 3 cut(s) | 154, 708, 859 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 66, 881, 1930 |
| AflII | CTTAAG | 1 cut(s) | 1148 |
| AflIII | ACRYGT | 2 cut(s) | 1076, 1632 |
| AgsI | TTSAA | 6 cut(s) | 470, 982, 1382, 1480, 1904, 2033 |
| AjiI | CACGTC | 1 cut(s) | 2065 |
| AjnI | CCWGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 876, 908 |
| Alw21I | GWGCWC | 2 cut(s) | 1173, 1235 |
| Alw26I | GTCTC | 2 cut(s) | 15, 1033 |
| AlwI | GGATC | 1 cut(s) | 1923 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1298 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| AoxI | GGCC | 3 cut(s) | 1426, 1490, 1992 |
| ApeKI | GCWGC | 3 cut(s) | 19, 986, 2037 |
| ApoI | RAATTY | 6 cut(s) | 430, 575, 627, 640, 692, 1326 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 560, 592, 915, 947 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1101 |
| AspS9I | GGNCC | 3 cut(s) | 277, 767, 2068 |
| AsuHPI | GGTGA | 5 cut(s) | 332, 433, 511, 646, 1062 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 3 cut(s) | 277, 767, 2068 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 841, 874 |
| BalI | TGGCCA | 1 cut(s) | 1492 |
| BanII | GRGCYC | 2 cut(s) | 1173, 1235 |
| BauI | CACGAG | 1 cut(s) | 1751 |
| BbsI | GAAGAC | 1 cut(s) | 1508 |
| Bbv12I | GWGCWC | 2 cut(s) | 1173, 1235 |
| BbvI | GCAGC | 3 cut(s) | 31, 973, 2024 |
| BccI | CCATC | 5 cut(s) | 32, 311, 999, 1796, 1853 |
| BciT130I | CCWGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| BcoDI | GTCTC | 2 cut(s) | 15, 1033 |
| BfrI | CTTAAG | 1 cut(s) | 1148 |
| BfuAI | ACCTGC | 1 cut(s) | 228 |
| BisI | GCNGC | 4 cut(s) | 20, 987, 1429, 2038 |
| BlsI | GCNGC | 4 cut(s) | 21, 988, 1430, 2039 |
| Bme1390I | CCNGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| Bme18I | GGWCC | 3 cut(s) | 277, 767, 2068 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgBI | CACGTC | 1 cut(s) | 2065 |
| BmgT120I | GGNCC | 3 cut(s) | 277, 767, 2068 |
| BmiI | GGNNCC | 4 cut(s) | 278, 768, 769, 873 |
| BmrFI | CCNGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| BmrI | ACTGGG | 1 cut(s) | 1350 |
| BmsI | GCATC | 6 cut(s) | 93, 313, 1264, 1291, 1440, 1461 |
| BmuI | ACTGGG | 1 cut(s) | 1350 |
| BpiI | GAAGAC | 1 cut(s) | 1508 |
| BpmI | CTGGAG | 2 cut(s) | 831, 903 |
| BsaAI | YACGTR | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 267 |
| BsaI | GGTCTC | 1 cut(s) | 1033 |
| BsaJI | CCNNGG | 1 cut(s) | 804 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 876, 906 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 66, 881, 1930 |
| Bse1I | ACTGG | 4 cut(s) | 861, 1345, 1924, 1947 |
| Bse3DI | GCAATG | 2 cut(s) | 1183, 1317 |
| Bse8I | GATNNNNATC | 1 cut(s) | 267 |
| BseBI | CCWGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| BseDI | CCNNGG | 1 cut(s) | 804 |
| BseGI | GGATG | 2 cut(s) | 514, 1864 |
| BseJI | GATNNNNATC | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 66, 881, 1930 |
| BseMI | GCAATG | 2 cut(s) | 1183, 1317 |
| BseMII | CTCAG | 3 cut(s) | 236, 1220, 1677 |
| BseNI | ACTGG | 4 cut(s) | 861, 1345, 1924, 1947 |
| BseRI | GAGGAG | 1 cut(s) | 517 |
| BseXI | GCAGC | 3 cut(s) | 31, 973, 2024 |
| BshFI | GGCC | 3 cut(s) | 1428, 1492, 1994 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1173, 1235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BslFI | GGGAC | 2 cut(s) | 349, 780 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 66, 881, 1930 |
| BsmAI | GTCTC | 2 cut(s) | 15, 1033 |
| BsmFI | GGGAC | 2 cut(s) | 349, 780 |
| BsmI | GAATGC | 2 cut(s) | 286, 1042 |
| BsnI | GGCC | 3 cut(s) | 1428, 1492, 1994 |
| Bso31I | GGTCTC | 1 cut(s) | 1033 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1173, 1235 |
| Bsp143I | GATC | 3 cut(s) | 828, 1779, 1915 |
| Bsp19I | CCATGG | 1 cut(s) | 804 |
| BspACI | CCGC | 2 cut(s) | 563, 1429 |
| BspANI | GGCC | 3 cut(s) | 1428, 1492, 1994 |
| BspCNI | CTCAG | 3 cut(s) | 235, 1221, 1676 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspLI | GGNNCC | 4 cut(s) | 278, 768, 769, 873 |
| BspMI | ACCTGC | 1 cut(s) | 228 |
| BspPI | GGATC | 1 cut(s) | 1923 |
| BspTI | CTTAAG | 1 cut(s) | 1148 |
| BspTNI | GGTCTC | 1 cut(s) | 1033 |
| BsrDI | GCAATG | 2 cut(s) | 1183, 1317 |
| BsrI | ACTGG | 4 cut(s) | 861, 1345, 1924, 1947 |
| BssECI | CCNNGG | 1 cut(s) | 804 |
| BssMI | GATC | 3 cut(s) | 828, 1779, 1915 |
| BssNAI | GTATAC | 2 cut(s) | 1082, 1251 |
| BssSI | CACGAG | 1 cut(s) | 1751 |
| BssT1I | CCWWGG | 1 cut(s) | 804 |
| Bst1107I | GTATAC | 2 cut(s) | 1082, 1251 |
| Bst2BI | CACGAG | 1 cut(s) | 1751 |
| Bst2UI | CCWGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| Bst4CI | ACNGT | 3 cut(s) | 312, 588, 854 |
| Bst6I | CTCTTC | 2 cut(s) | 794, 1569 |
| BstAFI | CTTAAG | 1 cut(s) | 1148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1099 |
| BstBAI | YACGTR | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 6 cut(s) | 563, 594, 915, 1615, 1834, 1838 |
| BstDEI | CTNAG | 9 cut(s) | 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663 |
| BstDSI | CCRYGG | 1 cut(s) | 804 |
| BstEII | GGTNACC | 1 cut(s) | 1112 |
| BstF5I | GGATG | 2 cut(s) | 514, 1864 |
| BstKTI | GATC | 3 cut(s) | 831, 1782, 1918 |
| BstMAI | GTCTC | 2 cut(s) | 15, 1033 |
| BstMBI | GATC | 3 cut(s) | 828, 1779, 1915 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1099, 1301, 1817 |
| BstNI | CCWGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| BstNSI | RCATGY | 6 cut(s) | 596, 917, 1080, 1617, 1636, 2087 |
| BstPI | GGTNACC | 1 cut(s) | 1112 |
| BstSCI | CCNGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| BstV1I | GCAGC | 3 cut(s) | 31, 973, 2024 |
| BstV2I | GAAGAC | 1 cut(s) | 1508 |
| BstZ17I | GTATAC | 2 cut(s) | 1082, 1251 |
| BsuRI | GGCC | 3 cut(s) | 1428, 1492, 1994 |
| BtgI | CCRYGG | 1 cut(s) | 804 |
| BtgZI | GCGATG | 1 cut(s) | 977 |
| BtrI | CACGTC | 1 cut(s) | 2065 |
| BtsCI | GGATG | 2 cut(s) | 514, 1864 |
| BtsI | GCAGTG | 2 cut(s) | 676, 2064 |
| BtsIMutI | CAGTG | 4 cut(s) | 676, 1671, 1931, 2064 |
| BveI | ACCTGC | 1 cut(s) | 228 |
| Cac8I | GCNNGC | 6 cut(s) | 563, 594, 915, 1615, 1834, 1838 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1298 |
| CciI | TCATGA | 1 cut(s) | 135 |
| Cfr13I | GGNCC | 3 cut(s) | 277, 767, 2068 |
| Csp6I | GTAC | 3 cut(s) | 153, 707, 858 |
| CviQI | GTAC | 3 cut(s) | 153, 707, 858 |
| DdeI | CTNAG | 9 cut(s) | 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663 |
| DpnI | GATC | 3 cut(s) | 830, 1781, 1917 |
| DpnII | GATC | 3 cut(s) | 828, 1779, 1915 |
| DraI | TTTAAA | 2 cut(s) | 700, 715 |
| EaeI | YGGCCR | 2 cut(s) | 1426, 1490 |
| Eam1104I | CTCTTC | 2 cut(s) | 794, 1569 |
| EarI | CTCTTC | 2 cut(s) | 794, 1569 |
| Ecl136II | GAGCTC | 2 cut(s) | 1171, 1233 |
| Eco130I | CCWWGG | 1 cut(s) | 804 |
| Eco24I | GRGCYC | 2 cut(s) | 1173, 1235 |
| Eco31I | GGTCTC | 1 cut(s) | 1033 |
| Eco32I | GATATC | 1 cut(s) | 441 |
| Eco47I | GGWCC | 3 cut(s) | 277, 767, 2068 |
| Eco53kI | GAGCTC | 2 cut(s) | 1171, 1233 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| Eco91I | GGTNACC | 1 cut(s) | 1112 |
| EcoICRI | GAGCTC | 2 cut(s) | 1171, 1233 |
| EcoO109I | RGGNCCY | 2 cut(s) | 277, 767 |
| EcoO65I | GGTNACC | 1 cut(s) | 1112 |
| EcoRI | GAATTC | 2 cut(s) | 430, 640 |
| EcoRII | CCWGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| EcoRV | GATATC | 1 cut(s) | 441 |
| EcoT14I | CCWWGG | 1 cut(s) | 804 |
| EcoT38I | GRGCYC | 2 cut(s) | 1173, 1235 |
| ErhI | CCWWGG | 1 cut(s) | 804 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 2 cut(s) | 349, 780 |
| FauI | CCCGC | 1 cut(s) | 570 |
| FauNDI | CATATG | 1 cut(s) | 677 |
| FblI | GTMKAC | 2 cut(s) | 1081, 1250 |
| Fnu4HI | GCNGC | 4 cut(s) | 20, 987, 1429, 2038 |
| FokI | GGATG | 2 cut(s) | 521, 1871 |
| FriOI | GRGCYC | 2 cut(s) | 1173, 1235 |
| Fsp4HI | GCNGC | 4 cut(s) | 20, 987, 1429, 2038 |
| GluI | GCNGC | 4 cut(s) | 20, 987, 1429, 2038 |
| GsuI | CTGGAG | 2 cut(s) | 831, 903 |
| HaeIII | GGCC | 3 cut(s) | 1428, 1492, 1994 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 5 cut(s) | 454, 887, 923, 1365, 2044 |
| HphI | GGTGA | 5 cut(s) | 332, 433, 511, 646, 1062 |
| Hpy166II | GTNNAC | 9 cut(s) | 34, 618, 1082, 1251, 1376, 1750, 1936, 2062, 2068 |
| Hpy188I | TCNGA | 4 cut(s) | 523, 1230, 1273, 1300 |
| Hpy188III | TCNNGA | 6 cut(s) | 67, 136, 398, 491, 882, 1751 |
| Hpy8I | GTNNAC | 9 cut(s) | 34, 618, 1082, 1251, 1376, 1750, 1936, 2062, 2068 |
| HpyAV | CCTTC | 4 cut(s) | 354, 518, 2005, 2027 |
| HpyCH4III | ACNGT | 3 cut(s) | 312, 588, 854 |
| HpyCH4IV | ACGT | 4 cut(s) | 85, 117, 1620, 2064 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1099, 1301, 1817 |
| HpyF3I | CTNAG | 9 cut(s) | 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663 |
| HpySE526I | ACGT | 4 cut(s) | 85, 117, 1620, 2064 |
| KflI | GGGWCCC | 1 cut(s) | 767 |
| Kzo9I | GATC | 3 cut(s) | 828, 1779, 1915 |
| LmnI | GCTCC | 4 cut(s) | 414, 493, 1176, 1309 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 973, 2024 |
| LweI | GCATC | 6 cut(s) | 93, 313, 1264, 1291, 1440, 1461 |
| MaeII | ACGT | 4 cut(s) | 85, 117, 1620, 2064 |
| MaeIII | GTNAC | 7 cut(s) | 48, 421, 1052, 1112, 1288, 1601, 1960 |
| MalI | GATC | 3 cut(s) | 830, 1781, 1917 |
| MboI | GATC | 3 cut(s) | 828, 1779, 1915 |
| MboII | GAAGA | 5 cut(s) | 781, 1394, 1508, 1556, 1774 |
| MhlI | GDGCHC | 2 cut(s) | 1173, 1235 |
| MlsI | TGGCCA | 1 cut(s) | 1492 |
| MluNI | TGGCCA | 1 cut(s) | 1492 |
| MlyI | GAGTC | 2 cut(s) | 896, 2053 |
| MmeI | TCCRAC | 2 cut(s) | 1198, 1489 |
| Mox20I | TGGCCA | 1 cut(s) | 1492 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1101 |
| MscI | TGGCCA | 1 cut(s) | 1492 |
| MslI | CAYNNNNRTG | 4 cut(s) | 556, 1075, 1612, 2052 |
| Msp20I | TGGCCA | 1 cut(s) | 1492 |
| MspCI | CTTAAG | 1 cut(s) | 1148 |
| MspR9I | CCNGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| Mva1269I | GAATGC | 2 cut(s) | 286, 1042 |
| MvaI | CCWGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1099, 1301, 1817 |
| NcoI | CCATGG | 1 cut(s) | 804 |
| NdeI | CATATG | 1 cut(s) | 677 |
| NdeII | GATC | 3 cut(s) | 828, 1779, 1915 |
| NlaIV | GGNNCC | 4 cut(s) | 278, 768, 769, 873 |
| NmeAIII | GCCGAG | 1 cut(s) | 662 |
| NmuCI | GTSAC | 4 cut(s) | 48, 421, 1288, 1601 |
| NspI | RCATGY | 6 cut(s) | 596, 917, 1080, 1617, 1636, 2087 |
| PaeI | GCATGC | 3 cut(s) | 596, 917, 1617 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PciI | ACATGT | 2 cut(s) | 1076, 1632 |
| PctI | GAATGC | 2 cut(s) | 286, 1042 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1101 |
| PfeI | GAWTC | 3 cut(s) | 454, 923, 1365 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 881, 1930 |
| PfoI | TCCNGGA | 1 cut(s) | 1400 |
| PkrI | GCNGC | 4 cut(s) | 21, 988, 1430, 2039 |
| PleI | GAGTC | 2 cut(s) | 895, 2052 |
| PpsI | GAGTC | 2 cut(s) | 895, 2052 |
| Ppu21I | YACGTR | 1 cut(s) | 86 |
| PpuMI | RGGWCCY | 2 cut(s) | 277, 767 |
| PscI | ACATGT | 2 cut(s) | 1076, 1632 |
| PsiI | TTATAA | 2 cut(s) | 605, 1241 |
| Psp124BI | GAGCTC | 2 cut(s) | 1173, 1235 |
| Psp1406I | AACGTT | 2 cut(s) | 117, 1620 |
| Psp5II | RGGWCCY | 2 cut(s) | 277, 767 |
| Psp6I | CCWGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| PspEI | GGTNACC | 1 cut(s) | 1112 |
| PspGI | CCWGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| PspN4I | GGNNCC | 4 cut(s) | 278, 768, 769, 873 |
| PspPI | GGNCC | 3 cut(s) | 277, 767, 2068 |
| PspPPI | RGGWCCY | 2 cut(s) | 277, 767 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1298 |
| RsaI | GTAC | 3 cut(s) | 154, 708, 859 |
| RsaNI | GTAC | 3 cut(s) | 153, 707, 858 |
| RseI | CAYNNNNRTG | 4 cut(s) | 556, 1075, 1612, 2052 |
| SacI | GAGCTC | 2 cut(s) | 1173, 1235 |
| SatI | GCNGC | 4 cut(s) | 20, 987, 1429, 2038 |
| Sau3AI | GATC | 3 cut(s) | 828, 1779, 1915 |
| Sau96I | GGNCC | 3 cut(s) | 277, 767, 2068 |
| SchI | GAGTC | 2 cut(s) | 896, 2053 |
| ScrFI | CCNGG | 4 cut(s) | 572, 1402, 1708, 2072 |
| SduI | GDGCHC | 2 cut(s) | 1173, 1235 |
| SfaNI | GCATC | 6 cut(s) | 93, 313, 1264, 1291, 1440, 1461 |
| SinI | GGWCC | 3 cut(s) | 277, 767, 2068 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 556, 1075, 1612, 2052 |
| SmlI | CTYRAG | 1 cut(s) | 1148 |
| SmoI | CTYRAG | 1 cut(s) | 1148 |
| SphI | GCATGC | 3 cut(s) | 596, 917, 1617 |
| SsiI | CCGC | 2 cut(s) | 563, 1429 |
| SspI | AATATT | 1 cut(s) | 56 |
| SstI | GAGCTC | 2 cut(s) | 1173, 1235 |
| StyD4I | CCNGG | 4 cut(s) | 570, 1400, 1706, 2070 |
| StyI | CCWWGG | 1 cut(s) | 804 |
| TaaI | ACNGT | 3 cut(s) | 312, 588, 854 |
| TaiI | ACGT | 4 cut(s) | 88, 120, 1623, 2067 |
| TatI | WGTACW | 2 cut(s) | 152, 706 |
| TauI | GCSGC | 1 cut(s) | 1431 |
| TfiI | GAWTC | 3 cut(s) | 454, 923, 1365 |
| TscAI | CASTG | 4 cut(s) | 676, 1671, 1931, 2064 |
| TseFI | GTSAC | 4 cut(s) | 48, 421, 1288, 1601 |
| TseI | GCWGC | 3 cut(s) | 19, 986, 2037 |
| Tsp45I | GTSAC | 4 cut(s) | 48, 421, 1288, 1601 |
| TspGWI | ACGGA | 1 cut(s) | 321 |
| TspRI | CASTG | 4 cut(s) | 676, 1671, 1931, 2064 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 881, 1930 |
| Vha464I | CTTAAG | 1 cut(s) | 1148 |
| VpaK11BI | GGWCC | 3 cut(s) | 277, 767, 2068 |
| XapI | RAATTY | 6 cut(s) | 430, 575, 627, 640, 692, 1326 |
| XceI | RCATGY | 6 cut(s) | 596, 917, 1080, 1617, 1636, 2087 |
| XmiI | GTMKAC | 2 cut(s) | 1081, 1250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1101 |