Rmu_sc0002696.1_g000005

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002696.1
Physical Location & Seq
Forward (+)
24256 .. 26346
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002696.1_g000005.1.cds

Sequence Viewer

Length: 2091 bp
atgggtctgtctccaaagcagcccatctttgtttacaacaatatcatgtcacaatattcctcactcgggaagttattagttgcacgtaaattgtttcataagatgcctcttagaaacgttgtgtcatataatatcatgattagtgcttattgtacttctgggtatgttggggaagcttggaaaatgttttatgagatgagggtttctgggtttgagccaactcagtatgcagttagcaggttattgtcatgtgggtcattggatattcatcatggggtcctgttgcattctttggtaataaagaacggactgtttgatggtgatgcttttgtggggacttccttgttgggtttttatggaaggcatgggctgttagaggaagcgttttggacatttcaggatatgccttgtaggagcttggtgacatggaattccatgatatctttgcttgggaatcatgggttttttgaaaattgtgtgtttttgtttcgggagctggtgaggagggatgttaatttgtctgaaggttcttttatgggtgttctttctgcattttcatgcccgcaagacctggaatttggggaacagttgcatgcttttgttataaagaatgggtttacttgtgaaattttggtgatgaattctctaataagtatgtatgtgaaatgcagtgccatatgctcggcagagaaattttttaaagaagtacaatttaaagatgttgtatcatggaatactatcattggtgcgacagcaaaaattgggggaccccaaaaagcagtagaactcttctctcaaatgtccatggctggagtgttgcctaccgagatcacatttgttagtctaataaactgttgtaccagtttggaggttccaatctctggagagtcagttcatgctaagataatccagcatgcttacgaatctaatgtcttagtaggtagtgcattggttgatttttatgctaaatgtgataacttgaaagctgcccatcgctgtttttatgagatatgtgcgaaaaatgtggtctcttggaatgctttgattttgggttactcaaatagttcctcacctacatgtatactcttactgcaagaaatgcttcatttgggttaccgacctaacgagttttcattttctgctgttcttaagtcatcattggcattagagctccaacaacttcattgcttagttgtaagaatgggctttgagcaaaattattatgttctgagctctcttataatgtcgtataccaaaagtggtttaatatctgatgctctggtttttgtcacagcttctgatgctccctctaatgccattgctggaatttacaacagaactgggcaatataatgaaactctaagattcctttgtccacttgaagaacttgatatgttttcctggaacattgtgatttcagctcttggccgcatcggttattacaaagaggtatttgagcttttccaacagatgcagttcaatcaggtctggccagacaattatacatttgttagtcttctaagtgtctgtgctaaactttgtaatcttgctttgggaagttctcttcatgcttatatcattaagactgatttcagttcttgtgacacatttgcatgcaacgttttacttgacatgtatgggaaatgtggtagcattggaaactcagtgaaaatctttgacgaaatgagatacaaaaacttaattacctggacagctttgatttctgctcttggagttaatggttatgttcacgaggcattagagagatttagagaaatgatcttcttgggctttaagcctgatggagtagcttttactgctgttcttacagcttgcaggcatggtgggttagttagggatggattggagttatttgggcaaatgataaataattatggggttgaaccaaaaatggatcattaccagtgtgtggtggacttactggttaaaggtggtcatgttacagaagcagagaaactaatttccagcatggccttcccaccaaatatgattatatggcgttgtttccttgaaggctgcaagagtcatggaaatgcagtggacgtggaccaggcagtagcacatgcttaa

Protein Analysis

696

Amino Acids

77.61

Weight (kDa)

6.1

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 605, 1241
Acc36I ACCTGC 1 cut(s) 228
AccB7I CCANNNNNTGG 2 cut(s) 881, 1930
AccI GTMKAC 2 cut(s) 1081, 1250
AciI CCGC 2 cut(s) 563, 1429
AclI AACGTT 2 cut(s) 117, 1620
AclWI GGATC 1 cut(s) 1923
AcoI YGGCCR 2 cut(s) 1426, 1490
AcsI RAATTY 6 cut(s) 430, 575, 627, 640, 692, 1326
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 154, 708, 859
AfiI CCNNNNNNNGG 3 cut(s) 66, 881, 1930
AflII CTTAAG 1 cut(s) 1148
AflIII ACRYGT 2 cut(s) 1076, 1632
AgsI TTSAA 6 cut(s) 470, 982, 1382, 1480, 1904, 2033
AjiI CACGTC 1 cut(s) 2065
AjnI CCWGG 4 cut(s) 570, 1400, 1706, 2070
AloI GAACNNNNNNTCC 2 cut(s) 876, 908
Alw21I GWGCWC 2 cut(s) 1173, 1235
Alw26I GTCTC 2 cut(s) 15, 1033
AlwI GGATC 1 cut(s) 1923
AlwNI CAGNNNCTG 1 cut(s) 1298
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 3 cut(s) 1426, 1490, 1992
ApeKI GCWGC 3 cut(s) 19, 986, 2037
ApoI RAATTY 6 cut(s) 430, 575, 627, 640, 692, 1326
ArsI GACNNNNNNTTYG 4 cut(s) 560, 592, 915, 947
Asp700I GAANNNNTTC 1 cut(s) 1101
AspS9I GGNCC 3 cut(s) 277, 767, 2068
AsuHPI GGTGA 5 cut(s) 332, 433, 511, 646, 1062
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 3 cut(s) 277, 767, 2068
BaeI ACNNNNGTAYC 2 cut(s) 841, 874
BalI TGGCCA 1 cut(s) 1492
BanII GRGCYC 2 cut(s) 1173, 1235
BauI CACGAG 1 cut(s) 1751
BbsI GAAGAC 1 cut(s) 1508
Bbv12I GWGCWC 2 cut(s) 1173, 1235
BbvI GCAGC 3 cut(s) 31, 973, 2024
BccI CCATC 5 cut(s) 32, 311, 999, 1796, 1853
BciT130I CCWGG 4 cut(s) 572, 1402, 1708, 2072
BcoDI GTCTC 2 cut(s) 15, 1033
BfrI CTTAAG 1 cut(s) 1148
BfuAI ACCTGC 1 cut(s) 228
BisI GCNGC 4 cut(s) 20, 987, 1429, 2038
BlsI GCNGC 4 cut(s) 21, 988, 1430, 2039
Bme1390I CCNGG 4 cut(s) 572, 1402, 1708, 2072
Bme18I GGWCC 3 cut(s) 277, 767, 2068
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 2065
BmgT120I GGNCC 3 cut(s) 277, 767, 2068
BmiI GGNNCC 4 cut(s) 278, 768, 769, 873
BmrFI CCNGG 4 cut(s) 572, 1402, 1708, 2072
BmrI ACTGGG 1 cut(s) 1350
BmsI GCATC 6 cut(s) 93, 313, 1264, 1291, 1440, 1461
BmuI ACTGGG 1 cut(s) 1350
BpiI GAAGAC 1 cut(s) 1508
BpmI CTGGAG 2 cut(s) 831, 903
BsaAI YACGTR 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 1033
BsaJI CCNNGG 1 cut(s) 804
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 881, 1930
Bse1I ACTGG 4 cut(s) 861, 1345, 1924, 1947
Bse3DI GCAATG 2 cut(s) 1183, 1317
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 4 cut(s) 572, 1402, 1708, 2072
BseDI CCNNGG 1 cut(s) 804
BseGI GGATG 2 cut(s) 514, 1864
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 66, 881, 1930
BseMI GCAATG 2 cut(s) 1183, 1317
BseMII CTCAG 3 cut(s) 236, 1220, 1677
BseNI ACTGG 4 cut(s) 861, 1345, 1924, 1947
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 3 cut(s) 31, 973, 2024
BshFI GGCC 3 cut(s) 1428, 1492, 1994
BsiHKAI GWGCWC 2 cut(s) 1173, 1235
BsiHKCI CYCGRG 1 cut(s) 65
BslFI GGGAC 2 cut(s) 349, 780
BslI CCNNNNNNNGG 3 cut(s) 66, 881, 1930
BsmAI GTCTC 2 cut(s) 15, 1033
BsmFI GGGAC 2 cut(s) 349, 780
BsmI GAATGC 2 cut(s) 286, 1042
BsnI GGCC 3 cut(s) 1428, 1492, 1994
Bso31I GGTCTC 1 cut(s) 1033
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 1173, 1235
Bsp143I GATC 3 cut(s) 828, 1779, 1915
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 2 cut(s) 563, 1429
BspANI GGCC 3 cut(s) 1428, 1492, 1994
BspCNI CTCAG 3 cut(s) 235, 1221, 1676
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 278, 768, 769, 873
BspMI ACCTGC 1 cut(s) 228
BspPI GGATC 1 cut(s) 1923
BspTI CTTAAG 1 cut(s) 1148
BspTNI GGTCTC 1 cut(s) 1033
BsrDI GCAATG 2 cut(s) 1183, 1317
BsrI ACTGG 4 cut(s) 861, 1345, 1924, 1947
BssECI CCNNGG 1 cut(s) 804
BssMI GATC 3 cut(s) 828, 1779, 1915
BssNAI GTATAC 2 cut(s) 1082, 1251
BssSI CACGAG 1 cut(s) 1751
BssT1I CCWWGG 1 cut(s) 804
Bst1107I GTATAC 2 cut(s) 1082, 1251
Bst2BI CACGAG 1 cut(s) 1751
Bst2UI CCWGG 4 cut(s) 572, 1402, 1708, 2072
Bst4CI ACNGT 3 cut(s) 312, 588, 854
Bst6I CTCTTC 2 cut(s) 794, 1569
BstAFI CTTAAG 1 cut(s) 1148
BstAPI GCANNNNNTGC 1 cut(s) 1099
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 6 cut(s) 563, 594, 915, 1615, 1834, 1838
BstDEI CTNAG 9 cut(s) 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663
BstDSI CCRYGG 1 cut(s) 804
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 2 cut(s) 514, 1864
BstKTI GATC 3 cut(s) 831, 1782, 1918
BstMAI GTCTC 2 cut(s) 15, 1033
BstMBI GATC 3 cut(s) 828, 1779, 1915
BstMWI GCNNNNNNNGC 3 cut(s) 1099, 1301, 1817
BstNI CCWGG 4 cut(s) 572, 1402, 1708, 2072
BstNSI RCATGY 6 cut(s) 596, 917, 1080, 1617, 1636, 2087
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 4 cut(s) 570, 1400, 1706, 2070
BstV1I GCAGC 3 cut(s) 31, 973, 2024
BstV2I GAAGAC 1 cut(s) 1508
BstZ17I GTATAC 2 cut(s) 1082, 1251
BsuRI GGCC 3 cut(s) 1428, 1492, 1994
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 1 cut(s) 977
BtrI CACGTC 1 cut(s) 2065
BtsCI GGATG 2 cut(s) 514, 1864
BtsI GCAGTG 2 cut(s) 676, 2064
BtsIMutI CAGTG 4 cut(s) 676, 1671, 1931, 2064
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 6 cut(s) 563, 594, 915, 1615, 1834, 1838
CaiI CAGNNNCTG 1 cut(s) 1298
CciI TCATGA 1 cut(s) 135
Cfr13I GGNCC 3 cut(s) 277, 767, 2068
Csp6I GTAC 3 cut(s) 153, 707, 858
CviQI GTAC 3 cut(s) 153, 707, 858
DdeI CTNAG 9 cut(s) 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663
DpnI GATC 3 cut(s) 830, 1781, 1917
DpnII GATC 3 cut(s) 828, 1779, 1915
DraI TTTAAA 2 cut(s) 700, 715
EaeI YGGCCR 2 cut(s) 1426, 1490
Eam1104I CTCTTC 2 cut(s) 794, 1569
EarI CTCTTC 2 cut(s) 794, 1569
Ecl136II GAGCTC 2 cut(s) 1171, 1233
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 2 cut(s) 1173, 1235
Eco31I GGTCTC 1 cut(s) 1033
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 3 cut(s) 277, 767, 2068
Eco53kI GAGCTC 2 cut(s) 1171, 1233
Eco57I CTGAAG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 2 cut(s) 1171, 1233
EcoO109I RGGNCCY 2 cut(s) 277, 767
EcoO65I GGTNACC 1 cut(s) 1112
EcoRI GAATTC 2 cut(s) 430, 640
EcoRII CCWGG 4 cut(s) 570, 1400, 1706, 2070
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 804
EcoT38I GRGCYC 2 cut(s) 1173, 1235
ErhI CCWWGG 1 cut(s) 804
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 2 cut(s) 349, 780
FauI CCCGC 1 cut(s) 570
FauNDI CATATG 1 cut(s) 677
FblI GTMKAC 2 cut(s) 1081, 1250
Fnu4HI GCNGC 4 cut(s) 20, 987, 1429, 2038
FokI GGATG 2 cut(s) 521, 1871
FriOI GRGCYC 2 cut(s) 1173, 1235
Fsp4HI GCNGC 4 cut(s) 20, 987, 1429, 2038
GluI GCNGC 4 cut(s) 20, 987, 1429, 2038
GsuI CTGGAG 2 cut(s) 831, 903
HaeIII GGCC 3 cut(s) 1428, 1492, 1994
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 5 cut(s) 454, 887, 923, 1365, 2044
HphI GGTGA 5 cut(s) 332, 433, 511, 646, 1062
Hpy166II GTNNAC 9 cut(s) 34, 618, 1082, 1251, 1376, 1750, 1936, 2062, 2068
Hpy188I TCNGA 4 cut(s) 523, 1230, 1273, 1300
Hpy188III TCNNGA 6 cut(s) 67, 136, 398, 491, 882, 1751
Hpy8I GTNNAC 9 cut(s) 34, 618, 1082, 1251, 1376, 1750, 1936, 2062, 2068
HpyAV CCTTC 4 cut(s) 354, 518, 2005, 2027
HpyCH4III ACNGT 3 cut(s) 312, 588, 854
HpyCH4IV ACGT 4 cut(s) 85, 117, 1620, 2064
HpyF10VI GCNNNNNNNGC 3 cut(s) 1099, 1301, 1817
HpyF3I CTNAG 9 cut(s) 110, 222, 900, 934, 1189, 1229, 1361, 1520, 1663
HpySE526I ACGT 4 cut(s) 85, 117, 1620, 2064
KflI GGGWCCC 1 cut(s) 767
Kzo9I GATC 3 cut(s) 828, 1779, 1915
LmnI GCTCC 4 cut(s) 414, 493, 1176, 1309
Lsp1109I GCAGC 3 cut(s) 31, 973, 2024
LweI GCATC 6 cut(s) 93, 313, 1264, 1291, 1440, 1461
MaeII ACGT 4 cut(s) 85, 117, 1620, 2064
MaeIII GTNAC 7 cut(s) 48, 421, 1052, 1112, 1288, 1601, 1960
MalI GATC 3 cut(s) 830, 1781, 1917
MboI GATC 3 cut(s) 828, 1779, 1915
MboII GAAGA 5 cut(s) 781, 1394, 1508, 1556, 1774
MhlI GDGCHC 2 cut(s) 1173, 1235
MlsI TGGCCA 1 cut(s) 1492
MluNI TGGCCA 1 cut(s) 1492
MlyI GAGTC 2 cut(s) 896, 2053
MmeI TCCRAC 2 cut(s) 1198, 1489
Mox20I TGGCCA 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 1101
MscI TGGCCA 1 cut(s) 1492
MslI CAYNNNNRTG 4 cut(s) 556, 1075, 1612, 2052
Msp20I TGGCCA 1 cut(s) 1492
MspCI CTTAAG 1 cut(s) 1148
MspR9I CCNGG 4 cut(s) 572, 1402, 1708, 2072
Mva1269I GAATGC 2 cut(s) 286, 1042
MvaI CCWGG 4 cut(s) 572, 1402, 1708, 2072
MwoI GCNNNNNNNGC 3 cut(s) 1099, 1301, 1817
NcoI CCATGG 1 cut(s) 804
NdeI CATATG 1 cut(s) 677
NdeII GATC 3 cut(s) 828, 1779, 1915
NlaIV GGNNCC 4 cut(s) 278, 768, 769, 873
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 4 cut(s) 48, 421, 1288, 1601
NspI RCATGY 6 cut(s) 596, 917, 1080, 1617, 1636, 2087
PaeI GCATGC 3 cut(s) 596, 917, 1617
PagI TCATGA 1 cut(s) 135
PciI ACATGT 2 cut(s) 1076, 1632
PctI GAATGC 2 cut(s) 286, 1042
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 3 cut(s) 454, 923, 1365
PflMI CCANNNNNTGG 2 cut(s) 881, 1930
PfoI TCCNGGA 1 cut(s) 1400
PkrI GCNGC 4 cut(s) 21, 988, 1430, 2039
PleI GAGTC 2 cut(s) 895, 2052
PpsI GAGTC 2 cut(s) 895, 2052
Ppu21I YACGTR 1 cut(s) 86
PpuMI RGGWCCY 2 cut(s) 277, 767
PscI ACATGT 2 cut(s) 1076, 1632
PsiI TTATAA 2 cut(s) 605, 1241
Psp124BI GAGCTC 2 cut(s) 1173, 1235
Psp1406I AACGTT 2 cut(s) 117, 1620
Psp5II RGGWCCY 2 cut(s) 277, 767
Psp6I CCWGG 4 cut(s) 570, 1400, 1706, 2070
PspEI GGTNACC 1 cut(s) 1112
PspGI CCWGG 4 cut(s) 570, 1400, 1706, 2070
PspN4I GGNNCC 4 cut(s) 278, 768, 769, 873
PspPI GGNCC 3 cut(s) 277, 767, 2068
PspPPI RGGWCCY 2 cut(s) 277, 767
PstNI CAGNNNCTG 1 cut(s) 1298
RsaI GTAC 3 cut(s) 154, 708, 859
RsaNI GTAC 3 cut(s) 153, 707, 858
RseI CAYNNNNRTG 4 cut(s) 556, 1075, 1612, 2052
SacI GAGCTC 2 cut(s) 1173, 1235
SatI GCNGC 4 cut(s) 20, 987, 1429, 2038
Sau3AI GATC 3 cut(s) 828, 1779, 1915
Sau96I GGNCC 3 cut(s) 277, 767, 2068
SchI GAGTC 2 cut(s) 896, 2053
ScrFI CCNGG 4 cut(s) 572, 1402, 1708, 2072
SduI GDGCHC 2 cut(s) 1173, 1235
SfaNI GCATC 6 cut(s) 93, 313, 1264, 1291, 1440, 1461
SinI GGWCC 3 cut(s) 277, 767, 2068
SmiMI CAYNNNNRTG 4 cut(s) 556, 1075, 1612, 2052
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
SphI GCATGC 3 cut(s) 596, 917, 1617
SsiI CCGC 2 cut(s) 563, 1429
SspI AATATT 1 cut(s) 56
SstI GAGCTC 2 cut(s) 1173, 1235
StyD4I CCNGG 4 cut(s) 570, 1400, 1706, 2070
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 3 cut(s) 312, 588, 854
TaiI ACGT 4 cut(s) 88, 120, 1623, 2067
TatI WGTACW 2 cut(s) 152, 706
TauI GCSGC 1 cut(s) 1431
TfiI GAWTC 3 cut(s) 454, 923, 1365
TscAI CASTG 4 cut(s) 676, 1671, 1931, 2064
TseFI GTSAC 4 cut(s) 48, 421, 1288, 1601
TseI GCWGC 3 cut(s) 19, 986, 2037
Tsp45I GTSAC 4 cut(s) 48, 421, 1288, 1601
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 4 cut(s) 676, 1671, 1931, 2064
Van91I CCANNNNNTGG 2 cut(s) 881, 1930
Vha464I CTTAAG 1 cut(s) 1148
VpaK11BI GGWCC 3 cut(s) 277, 767, 2068
XapI RAATTY 6 cut(s) 430, 575, 627, 640, 692, 1326
XceI RCATGY 6 cut(s) 596, 917, 1080, 1617, 1636, 2087
XmiI GTMKAC 2 cut(s) 1081, 1250
XmnI GAANNNNTTC 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.