Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011722

Physical Location & Seq

Genomic Coordinates Reverse (-)

41309909 .. 41313656

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1288200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTGTATCAACGAGGATCTTGCAGAGTCTTTCGGGTCGGATTTGTATGATTTTCAACTGAGTGAGCTGCGTGCTGTGACTCAGAAATTTTCGGTCAATTTTTTACTTGGAGAAGGCGGGTTTGGAACTGTTCATAAGGGTTACATTGATGAGAATCTGAGGCAGGGTTTGAAAGCTCAGGCCGTTGCCATTAAGCTCCTCGACATTGAAGGCCTACAAGGACACCGCGAATGGCTAGCAGAAGTGATATTTCTTGGGCAGCTCAGGCACCATAATTTGGTGAAATTAATTGGCTACTGTTGCAAGAACGAGGAAAGACTCCTTGTTTACGAGTTTATGCCTCGAGGCAGCTTAGAGAATCACTTATTCAAAAGGCTTTCAATATCATTGCCTTGGGCCACAAGATTAAAGATTGCAATAGGAGCAGCCGAAGGCCTTGCTTTCTTGCATGGGGCCGAGACACCTGTCATATACCGGGATTTCAAAAGTTCAAATGTTTTGCTAGATTCTGATTTCACAGCAAAGCTGTCAGATTTTGGACTAGCAAAGATGGGACCCGAAGGATCAGAAACACATGTCACAACAAGAGTAATGGGTACCTATGGATATGCAGCCCCTGAATATGTCTCAACAGGGCAATTGACAATAAAATGTGACATCTACAGCTTTGGAGTGGTGCTGCTAGAATTGCTAACAGGAAAAAGAGCAATGGATAAATCAAGACCAAAGAGCGAGCAAAATCTGATTGAATGGGCAAAACCTTACATGTATAGTAGTCGGAGGTTGTGCTGTATTATGGACCCGAGACTTGCCGGCCAGTATTCTGTTAAGGGAGCAAAGGAGATTGCCCATCTGGCATTACAATGCATAAGCATGAACCCCAAAGACAGGCCTAGAATGCCTTCCATTATCGAGACTCTTGAAAGCCTTCGAGACTTGAAGGACATTGCCGTCGCTTATGGGCATTGGCCGGCATCACCAAAATTTGCTAGAAATGGTGTTTTTGCTAAAGCTAGAATGGATGGTCATAGAGTTGGGAATATCAGGAAATCGTCTCCAACGGCAACTGCAAATCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

361

Amino Acids

40.25

Weight (kDa)

8.92

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 305	4.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 307	5.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05940 AT5G35580 AT5G35580
fragaria_vesca	FvH4_1g08770 FvH4_1g08770 FvH4_1g08770
malus_domestica	MD02G1091900.v1.1 MD15G1218000.v1.1 MD16G1288200.v1.1
prunus_persica	Prupe.7G198400_v2.0.a1
pyrus_communis	pycom15g19360
rosa_chinensis	RchiOBHm_Chr2g0095161
rosa_laevigata	RLG00000016542
rosa_multiflora	Rmu_ssc0000183.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146570
rosa_samantha	Rh2AG096700 Rh2BG098000 Rh2CG100000
rosa_wichuraiana	Rw2G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	950
AbsI	CCTCGAGG	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	267, 596
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	228
AciI	CCGC	2 cut(s)	117, 226
AclWI	GGATC	2 cut(s)	24, 571
AcoI	YGGCCR	2 cut(s)	814, 968
AcsI	RAATTY	2 cut(s)	86, 983
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	277, 888
AflIII	ACRYGT	2 cut(s)	574, 765
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	8 cut(s)	67, 176, 196, 262, 351, 526, 666, 1013
AluI	AGCT	8 cut(s)	67, 176, 196, 262, 351, 526, 666, 1013
Alw26I	GTCTC	6 cut(s)	452, 631, 799, 908, 927, 1059
AlwI	GGATC	2 cut(s)	24, 571
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	2 cut(s)	342, 802
AoxI	GGCC	8 cut(s)	180, 211, 396, 433, 453, 814, 890, 968
ApeKI	GCWGC	6 cut(s)	67, 259, 348, 425, 611, 679
ApoI	RAATTY	2 cut(s)	86, 983
AseI	ATTAAT	1 cut(s)	287
Asp700I	GAANNNNTTC	2 cut(s)	901, 927
Asp718I	GGTACC	1 cut(s)	596
AspS9I	GGNCC	4 cut(s)	396, 453, 554, 799
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	292, 969
AsuNHI	GCTAGC	1 cut(s)	235
AvaI	CYCGRG	2 cut(s)	342, 802
AvaII	GGWCC	2 cut(s)	554, 799
BanI	GGYRCC	2 cut(s)	267, 596
BbvI	GCAGC	6 cut(s)	54, 271, 360, 437, 623, 666
BccI	CCATC	3 cut(s)	544, 858, 1016
BceAI	ACGGC	3 cut(s)	167, 935, 1077
BcgI	CGANNNNNNTGC	3 cut(s)	36, 419, 453
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	6 cut(s)	452, 631, 799, 908, 927, 1059
BfaI	CTAG	7 cut(s)	236, 503, 542, 683, 894, 990, 1014
BfmI	CTRYAG	1 cut(s)	661
BglI	GCCNNNNNGGC	1 cut(s)	854
BisI	GCNGC	6 cut(s)	68, 260, 349, 426, 612, 680
BlsI	GCNGC	6 cut(s)	69, 261, 350, 427, 613, 681
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	554, 799
BmeT110I	CYCGRG	2 cut(s)	342, 802
BmgT120I	GGNCC	4 cut(s)	396, 453, 554, 799
BmiI	GGNNCC	6 cut(s)	269, 454, 555, 556, 598, 801
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	983
BmtI	GCTAGC	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	464
Bpu10I	CCTNAGC	2 cut(s)	177, 263
BpuMI	CCSGG	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 888
Bse118I	RCCGGY	2 cut(s)	812, 970
Bse1I	ACTGG	1 cut(s)	817
Bse3DI	GCAATG	3 cut(s)	386, 714, 945
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	1027
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	277, 888
BseMI	GCAATG	3 cut(s)	386, 714, 945
BseMII	CTCAG	5 cut(s)	50, 95, 149, 191, 277
BseNI	ACTGG	1 cut(s)	817
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	6 cut(s)	54, 271, 360, 437, 623, 666
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	8 cut(s)	182, 213, 398, 435, 455, 816, 892, 970
BshNI	GGYRCC	2 cut(s)	267, 596
BsiHKCI	CYCGRG	2 cut(s)	342, 802
BsiSI	CCGG	3 cut(s)	475, 813, 971
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	277, 888
BsmAI	GTCTC	6 cut(s)	452, 631, 799, 908, 927, 1059
BsmBI	CGTCTC	1 cut(s)	1059
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	8 cut(s)	182, 213, 398, 435, 455, 816, 892, 970
BsoBI	CYCGRG	2 cut(s)	342, 802
Bsp143I	GATC	2 cut(s)	16, 563
BspACI	CCGC	2 cut(s)	117, 226
BspANI	GGCC	8 cut(s)	182, 213, 398, 435, 455, 816, 892, 970
BspCNI	CTCAG	5 cut(s)	51, 94, 150, 190, 276
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	6 cut(s)	269, 454, 555, 556, 598, 801
BspOI	GCTAGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	24, 571
BspT107I	GGYRCC	2 cut(s)	267, 596
BsrDI	GCAATG	3 cut(s)	386, 714, 945
BsrFI	RCCGGY	2 cut(s)	812, 970
BsrI	ACTGG	1 cut(s)	817
BssAI	RCCGGY	2 cut(s)	812, 970
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	16, 563
BssT1I	CCWWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	130, 299
BstC8I	GCNNGC	5 cut(s)	72, 237, 734, 814, 972
BstDEI	CTNAG	6 cut(s)	59, 81, 158, 177, 263, 352
BstF5I	GGATG	1 cut(s)	1027
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	19, 566
BstMAI	GTCTC	6 cut(s)	452, 631, 799, 908, 927, 1059
BstMBI	GATC	2 cut(s)	16, 563
BstMWI	GCNNNNNNNGC	6 cut(s)	265, 300, 422, 688, 854, 898
BstNSI	RCATGY	2 cut(s)	578, 769
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	661
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	6 cut(s)	54, 271, 360, 437, 623, 666
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	8 cut(s)	182, 213, 398, 435, 455, 816, 892, 970
BtsCI	GGATG	1 cut(s)	1027
Cac8I	GCNNGC	5 cut(s)	72, 237, 734, 814, 972
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr10I	RCCGGY	2 cut(s)	812, 970
Cfr13I	GGNCC	4 cut(s)	396, 453, 554, 799
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	4 cut(s)	449, 575, 766, 874
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	6 cut(s)	59, 81, 158, 177, 263, 352
DpnI	GATC	2 cut(s)	18, 565
DpnII	GATC	2 cut(s)	16, 563
DrdI	GACNNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	950
EaeI	YGGCCR	2 cut(s)	814, 968
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	3 cut(s)	213, 435, 892
Eco47I	GGWCC	2 cut(s)	554, 799
Eco88I	CYCGRG	2 cut(s)	342, 802
EcoO109I	RGGNCCY	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	1059
FaeI	CATG	4 cut(s)	452, 578, 769, 877
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	448, 574, 765, 873
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	6 cut(s)	68, 260, 349, 426, 612, 680
FokI	GGATG	1 cut(s)	1034
Fsp4HI	GCNGC	6 cut(s)	68, 260, 349, 426, 612, 680
FspBI	CTAG	7 cut(s)	236, 503, 542, 683, 894, 990, 1014
GluI	GCNGC	6 cut(s)	68, 260, 349, 426, 612, 680
HaeIII	GGCC	8 cut(s)	182, 213, 398, 435, 455, 816, 892, 970
HapII	CCGG	3 cut(s)	475, 813, 971
Hin1II	CATG	4 cut(s)	452, 578, 769, 877
HinfI	GANTC	7 cut(s)	26, 79, 154, 318, 358, 506, 916
HpaII	CCGG	3 cut(s)	475, 813, 971
HphI	GGTGA	2 cut(s)	292, 969
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	8 cut(s)	40, 84, 159, 511, 532, 568, 744, 780
Hpy188III	TCNNGA	5 cut(s)	720, 913, 920, 932, 1045
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	7 cut(s)	107, 203, 425, 554, 912, 934, 938
HpyCH4III	ACNGT	2 cut(s)	130, 299
HpyCH4V	TGCA	7 cut(s)	23, 303, 416, 448, 611, 867, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	265, 300, 422, 688, 854, 898
HpyF3I	CTNAG	6 cut(s)	59, 81, 158, 177, 263, 352
Hsp92II	CATG	4 cut(s)	452, 578, 769, 877
KflI	GGGWCCC	1 cut(s)	554
KpnI	GGTACC	1 cut(s)	600
KroI	GCCGGC	2 cut(s)	812, 970
KroNI	GCCGGC	2 cut(s)	814, 972
Kzo9I	GATC	2 cut(s)	16, 563
LmnI	GCTCC	3 cut(s)	201, 422, 833
Lsp1109I	GCAGC	6 cut(s)	54, 271, 360, 437, 623, 666
LweI	GCATC	1 cut(s)	983
MaeI	CTAG	7 cut(s)	236, 503, 542, 683, 894, 990, 1014
MaeIII	GTNAC	4 cut(s)	76, 140, 577, 653
MalI	GATC	2 cut(s)	18, 565
MboI	GATC	2 cut(s)	16, 563
MfeI	CAATTG	1 cut(s)	638
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	8 cut(s)	86, 97, 274, 284, 288, 638, 686, 983
MlyI	GAGTC	4 cut(s)	35, 73, 312, 910
MmeI	TCCRAC	3 cut(s)	18, 758, 1082
MnlI	CCTC	7 cut(s)	7, 153, 209, 304, 338, 351, 774
Mph1103I	ATGCAT	1 cut(s)	869
MroNI	GCCGGC	2 cut(s)	812, 970
MroXI	GAANNNNTTC	2 cut(s)	901, 927
MseI	TTAA	4 cut(s)	192, 287, 407, 828
MslI	CAYNNNNRTG	2 cut(s)	862, 872
MspI	CCGG	3 cut(s)	475, 813, 971
MspR9I	CCNGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	638
Mva1269I	GAATGC	1 cut(s)	903
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	265, 300, 422, 688, 854, 898
NaeI	GCCGGC	2 cut(s)	814, 972
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	2 cut(s)	16, 563
NgoMIV	GCCGGC	2 cut(s)	812, 970
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	452, 578, 769, 877
NlaIV	GGNNCC	6 cut(s)	269, 454, 555, 556, 598, 801
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	76, 577, 653
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	2 cut(s)	578, 769
PaeR7I	CTCGAG	1 cut(s)	342
PceI	AGGCCT	3 cut(s)	213, 435, 892
PciI	ACATGT	2 cut(s)	574, 765
PctI	GAATGC	1 cut(s)	903
PdiI	GCCGGC	2 cut(s)	814, 972
PdmI	GAANNNNTTC	2 cut(s)	901, 927
PfeI	GAWTC	3 cut(s)	154, 358, 506
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	6 cut(s)	69, 261, 350, 427, 613, 681
PleI	GAGTC	4 cut(s)	34, 73, 312, 910
PpsI	GAGTC	4 cut(s)	34, 73, 312, 910
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	2 cut(s)	574, 765
PshAI	GACNNNNGTC	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	554
PspN4I	GGNNCC	6 cut(s)	269, 454, 555, 556, 598, 801
PspPI	GGNCC	4 cut(s)	396, 453, 554, 799
PspPPI	RGGWCCY	1 cut(s)	554
PspXI	VCTCGAGB	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	862, 872
SaqAI	TTAA	4 cut(s)	192, 287, 407, 828
SatI	GCNGC	6 cut(s)	68, 260, 349, 426, 612, 680
Sau3AI	GATC	2 cut(s)	16, 563
Sau96I	GGNCC	4 cut(s)	396, 453, 554, 799
SchI	GAGTC	4 cut(s)	35, 73, 312, 910
ScrFI	CCNGG	1 cut(s)	476
SfaNI	GCATC	1 cut(s)	983
SfcI	CTRYAG	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	554, 799
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	862, 872
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	8 cut(s)	86, 97, 274, 284, 288, 638, 686, 983
SseBI	AGGCCT	3 cut(s)	213, 435, 892
SsiI	CCGC	2 cut(s)	117, 226
SspMI	CTAG	7 cut(s)	236, 503, 542, 683, 894, 990, 1014
StuI	AGGCCT	3 cut(s)	213, 435, 892
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	130, 299
TaqI	TCGA	4 cut(s)	201, 343, 912, 931
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	8 cut(s)	86, 97, 274, 284, 288, 638, 686, 983
TfiI	GAWTC	3 cut(s)	154, 358, 506
Tru1I	TTAA	4 cut(s)	192, 287, 407, 828
Tru9I	TTAA	4 cut(s)	192, 287, 407, 828
TseFI	GTSAC	3 cut(s)	76, 577, 653
TseI	GCWGC	6 cut(s)	67, 259, 348, 425, 611, 679
Tsp45I	GTSAC	3 cut(s)	76, 577, 653
TspDTI	ATGAA	2 cut(s)	122, 890
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	554, 799
VspI	ATTAAT	1 cut(s)	287
XapI	RAATTY	2 cut(s)	86, 983
XceI	RCATGY	2 cut(s)	578, 769
XhoI	CTCGAG	1 cut(s)	342
XmnI	GAANNNNTTC	2 cut(s)	901, 927
XspI	CTAG	7 cut(s)	236, 503, 542, 683, 894, 990, 1014
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.