Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011722

Physical Location & Seq

Genomic Coordinates Forward (+)

7485386 .. 7487071

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGACAGTCAAGAAAATCACATGTTGGTCTGTAGTCCCAAGTTGCTACAAGTCTGAGTTCCAAGCTCCCAAGAACAAAGCAAAGGTGATAGCAAAGCAGAACTCATTCCAGAGGCTTTCGCTTTCGGATTTGAGCAATCCCAGCTCGACTACACTTTCAGAAGATCTCTCCATATCTCTTGCAGGCTCCAATCTTCATATTTTCACACTTGGGGAGCTGAAGGTGATCACACAGAGCTTCTCATCCAGCAACTTTCTTGGAGAGGGCGGGTTTGGGCCGGTCCACAAAGGGTTCATCGATGACAAGCTTAGACCCGGTTTGGCTGCTCAGCCTGTGGCTGTTAAGCTCTTGGACTTGGATGGAACACAGGGGCATAGAGAGTGGTTGACTGAGGTTATCTTTCTTGGGCAATTGAGGCATCCGCACCTTGTGAAGCTCATAGGGTATTGCTGTGAAGATGAACATAGGCTATTGGTGTATGAATATATGCCAAGAGGCAGCTTAGAGAATCAGCTATTCAGAAGGTATTCAGTATCACTGCCATGGTCAACCAGAATGAAGATTGCTCTTGGAGCTGCAAAGGGTCTCGCTTTCCTACATGAAGCAGAGAAACCAGTTATATACCGAGATTTCAAAGCTTCGAACATCTTGTTAGATTCTGACTATACTCCCAAGCTCTCAGATTTTGGTCTAGCAAAAGATGGTCCAGAAGGAGATGACACACATGTTTCAACAAGAGTCATGGGAACACAAGGCTATGCTGCTCCTGAATACATTATGACAGGTCACTTGACGGCGATGAGTGATGTGTATAGCTTCGGAGTGGTACTATTGGAGCTACTAACAGGAAGGAGATCGGTGGAGAAGAGCCGTCCTCATAGAGAGCAGAACTTAGTAGAATGGGCAAGGCCAATGCTGAATGAACCCCGAAAACTCAGCCGAATAATGGATCCGAGACTAGAAGGACAATACTCTGAAATGGGGGCCAGAAAGGCTGCTGCATTGGCTTACCAATGCCTGAGCCACCGGCCTAAACAAAGACCGAAAATGTGTGATGTGGTGAAGACATTAGAGCCCCTCAAGGATTTTGATGACATTCCCATTGGACCCTTTGTGTACACAGTTCCTACTGATAAATCCGATAATTCAATTAAGGATGTGAAGGAAGGCAATGCACAGAGGGAATCAAAGAAGAAGTGCGGCCACCATCACCAAAACCAGCAGCTCCACCATGGCCATAGGCATCATCAAAGGACTCCTCCAAAGTCTCCTAACTGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

428

Amino Acids

48.08

Weight (kDa)

9.06

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 355	7.9e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 357	3.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05940 AT5G35580 AT5G35580
fragaria_vesca	FvH4_1g08770 FvH4_1g08770 FvH4_1g08770
malus_domestica	MD02G1091900.v1.1 MD15G1218000.v1.1 MD16G1288200.v1.1
prunus_persica	Prupe.7G198400_v2.0.a1
pyrus_communis	pycom15g19360
rosa_chinensis	RchiOBHm_Chr2g0095161
rosa_laevigata	RLG00000016542
rosa_multiflora	Rmu_ssc0000183.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146570
rosa_samantha	Rh2AG096700 Rh2BG098000 Rh2CG100000
rosa_wichuraiana	Rw2G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	267, 422, 1200
AclWI	GGATC	2 cut(s)	944, 957
AcoI	YGGCCR	2 cut(s)	1201, 1234
AcuI	CTGAAG	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	828, 1118
AfiI	CCNNNNNNNGG	1 cut(s)	946
AflIII	ACRYGT	2 cut(s)	20, 724
AgsI	TTSAA	3 cut(s)	634, 732, 1149
Alw26I	GTCTC	3 cut(s)	590, 949, 1272
AlwI	GGATC	2 cut(s)	944, 957
AoxI	GGCC	6 cut(s)	275, 908, 984, 1028, 1201, 1234
ApeKI	GCWGC	7 cut(s)	323, 498, 575, 761, 995, 998, 1222
Asp700I	GAANNNNTTC	2 cut(s)	104, 526
AspS9I	GGNCC	5 cut(s)	275, 280, 704, 984, 1106
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	97, 235, 1072, 1202
AsuII	TTCGAA	1 cut(s)	641
AvaII	GGWCC	3 cut(s)	280, 704, 1106
BalI	TGGCCA	1 cut(s)	1236
BamHI	GGATCC	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	1077
BbsI	GAAGAC	1 cut(s)	1070
BbvI	GCAGC	7 cut(s)	310, 510, 562, 748, 982, 985, 1234
BccI	CCATC	3 cut(s)	353, 695, 1215
BceAI	ACGGC	2 cut(s)	810, 855
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	3 cut(s)	590, 949, 1272
BfaI	CTAG	3 cut(s)	692, 959, 1282
BfmI	CTRYAG	1 cut(s)	30
BglI	GCCNNNNNGGC	1 cut(s)	992
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	8 cut(s)	324, 499, 576, 762, 996, 999, 1201, 1223
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	8 cut(s)	325, 500, 577, 763, 997, 1000, 1202, 1224
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	3 cut(s)	280, 704, 1106
BmgT120I	GGNCC	5 cut(s)	275, 280, 704, 984, 1106
BmiI	GGNNCC	4 cut(s)	187, 951, 985, 1108
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	427, 1252
BpiI	GAAGAC	1 cut(s)	1070
BplI	GAGNNNNNCTC	2 cut(s)	859, 891
Bpu10I	CCTNAGC	1 cut(s)	1019
Bpu1102I	GCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	1064
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	542, 1231
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse118I	RCCGGY	2 cut(s)	277, 1026
Bse1I	ACTGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	1177
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	542, 1231
BseGI	GGATG	4 cut(s)	242, 364, 418, 1162
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMI	GCAATG	1 cut(s)	1177
BseMII	CTCAG	6 cut(s)	45, 341, 381, 693, 949, 1010
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	1 cut(s)	1248
BseXI	GCAGC	7 cut(s)	310, 510, 562, 748, 982, 985, 1234
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	6 cut(s)	277, 910, 986, 1030, 1203, 1236
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	278, 315, 1027
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	3 cut(s)	590, 949, 1272
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	6 cut(s)	277, 910, 986, 1030, 1203, 1236
Bso31I	GGTCTC	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp1407I	TGTACA	1 cut(s)	1116
Bsp143I	GATC	4 cut(s)	163, 225, 854, 949
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	2 cut(s)	542, 1231
BspACI	CCGC	3 cut(s)	267, 422, 1200
BspANI	GGCC	6 cut(s)	277, 910, 986, 1030, 1203, 1236
BspCNI	CTCAG	6 cut(s)	46, 340, 382, 692, 948, 1011
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	4 cut(s)	187, 951, 985, 1108
BspPI	GGATC	2 cut(s)	944, 957
BspQI	GCTCTTC	1 cut(s)	860
BspT104I	TTCGAA	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	1177
BsrFI	RCCGGY	2 cut(s)	277, 1026
BsrGI	TGTACA	1 cut(s)	1116
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	2 cut(s)	277, 1026
BssECI	CCNNGG	2 cut(s)	542, 1231
BssMI	GATC	4 cut(s)	163, 225, 854, 949
BssT1I	CCWWGG	2 cut(s)	542, 1231
Bst4CI	ACNGT	3 cut(s)	7, 1123, 1277
Bst6I	CTCTTC	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	1116
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	9 cut(s)	54, 308, 327, 390, 502, 679, 892, 935, 1019
BstDSI	CCRYGG	2 cut(s)	542, 1231
BstF5I	GGATG	4 cut(s)	242, 364, 418, 1162
BstKTI	GATC	4 cut(s)	166, 228, 857, 952
BstMAI	GTCTC	3 cut(s)	590, 949, 1272
BstMBI	GATC	4 cut(s)	163, 225, 854, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 415, 572, 992, 1004
BstNSI	RCATGY	2 cut(s)	24, 728
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	7 cut(s)	310, 510, 562, 748, 982, 985, 1234
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	163, 949
BstYI	RGATCY	2 cut(s)	163, 949
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	6 cut(s)	277, 910, 986, 1030, 1203, 1236
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	2 cut(s)	542, 1231
BtgZI	GCGATG	1 cut(s)	812
BtsCI	GGATG	4 cut(s)	242, 364, 418, 1162
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	277, 1026
Cfr13I	GGNCC	5 cut(s)	275, 280, 704, 984, 1106
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	827, 1117
CviAII	CATG	6 cut(s)	21, 543, 599, 725, 742, 1232
CviQI	GTAC	2 cut(s)	827, 1117
DdeI	CTNAG	9 cut(s)	54, 308, 327, 390, 502, 679, 892, 935, 1019
DpnI	GATC	4 cut(s)	165, 227, 856, 951
DpnII	GATC	4 cut(s)	163, 225, 854, 949
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	1201, 1234
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	2 cut(s)	542, 1231
Eco24I	GRGCYC	1 cut(s)	1077
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	3 cut(s)	280, 704, 1106
Eco57I	CTGAAG	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	542, 1231
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	2 cut(s)	542, 1231
FaeI	CATG	6 cut(s)	24, 546, 602, 728, 745, 1235
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	6 cut(s)	20, 542, 598, 724, 741, 1231
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	8 cut(s)	324, 499, 576, 762, 996, 999, 1201, 1223
FokI	GGATG	4 cut(s)	229, 371, 405, 1169
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	8 cut(s)	324, 499, 576, 762, 996, 999, 1201, 1223
FspBI	CTAG	3 cut(s)	692, 959, 1282
GluI	GCNGC	8 cut(s)	324, 499, 576, 762, 996, 999, 1201, 1223
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	6 cut(s)	277, 910, 986, 1030, 1203, 1236
HapII	CCGG	3 cut(s)	278, 315, 1027
Hin1II	CATG	6 cut(s)	24, 546, 602, 728, 745, 1235
HincII	GTYRAC	2 cut(s)	387, 549
HindII	GTYRAC	2 cut(s)	387, 549
HindIII	AAGCTT	2 cut(s)	305, 636
HinfI	GANTC	5 cut(s)	508, 656, 738, 1184, 1255
HpaII	CCGG	3 cut(s)	278, 315, 1027
HphI	GGTGA	4 cut(s)	97, 235, 1072, 1202
Hpy166II	GTNNAC	5 cut(s)	283, 387, 549, 1117, 1119
Hpy188III	TCNNGA	4 cut(s)	10, 109, 707, 767
Hpy8I	GTNNAC	5 cut(s)	283, 387, 549, 1117, 1119
HpyAV	CCTTC	7 cut(s)	214, 516, 704, 843, 956, 1156, 1160
HpyCH4III	ACNGT	3 cut(s)	7, 1123, 1277
HpyCH4V	TGCA	4 cut(s)	182, 578, 1001, 1175
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 415, 572, 992, 1004
HpyF3I	CTNAG	9 cut(s)	54, 308, 327, 390, 502, 679, 892, 935, 1019
Hsp92II	CATG	6 cut(s)	24, 546, 602, 728, 745, 1235
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	163, 225, 854, 949
LguI	GCTCTTC	1 cut(s)	860
LmnI	GCTCC	7 cut(s)	70, 191, 214, 572, 769, 835, 1230
Lsp1109I	GCAGC	7 cut(s)	310, 510, 562, 748, 982, 985, 1234
LweI	GCATC	2 cut(s)	427, 1252
MaeI	CTAG	3 cut(s)	692, 959, 1282
MaeIII	GTNAC	2 cut(s)	785, 1277
MalI	GATC	4 cut(s)	165, 227, 856, 951
MboI	GATC	4 cut(s)	163, 225, 854, 949
MboII	GAAGA	7 cut(s)	173, 185, 467, 571, 877, 1075, 1204
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	2 cut(s)	163, 949
MhlI	GDGCHC	1 cut(s)	1077
MlsI	TGGCCA	1 cut(s)	1236
MluCI	AATT	3 cut(s)	410, 1144, 1149
MluNI	TGGCCA	1 cut(s)	1236
MlyI	GAGTC	2 cut(s)	747, 1249
MnlI	CCTC	9 cut(s)	105, 256, 385, 408, 488, 885, 1088, 1173, 1269
Mox20I	TGGCCA	1 cut(s)	1236
MroXI	GAANNNNTTC	2 cut(s)	104, 526
MscI	TGGCCA	1 cut(s)	1236
MseI	TTAA	2 cut(s)	342, 1152
MslI	CAYNNNNRTG	1 cut(s)	541
Msp20I	TGGCCA	1 cut(s)	1236
MspI	CCGG	3 cut(s)	278, 315, 1027
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	410
MwoI	GCNNNNNNNGC	5 cut(s)	141, 415, 572, 992, 1004
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	2 cut(s)	542, 1231
NdeII	GATC	4 cut(s)	163, 225, 854, 949
NlaIII	CATG	6 cut(s)	24, 546, 602, 728, 745, 1235
NlaIV	GGNNCC	4 cut(s)	187, 951, 985, 1108
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	2 cut(s)	24, 728
NspV	TTCGAA	1 cut(s)	641
PciI	ACATGT	2 cut(s)	20, 724
PciSI	GCTCTTC	1 cut(s)	860
PdmI	GAANNNNTTC	2 cut(s)	104, 526
PfeI	GAWTC	3 cut(s)	508, 656, 1184
PkrI	GCNGC	8 cut(s)	325, 500, 577, 763, 997, 1000, 1202, 1224
PleI	GAGTC	2 cut(s)	746, 1249
PpsI	GAGTC	2 cut(s)	746, 1249
PscI	ACATGT	2 cut(s)	20, 724
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	187, 951, 985, 1108
PspPI	GGNCC	5 cut(s)	275, 280, 704, 984, 1106
PsuI	RGATCY	2 cut(s)	163, 949
RsaI	GTAC	2 cut(s)	828, 1118
RsaNI	GTAC	2 cut(s)	827, 1117
RseI	CAYNNNNRTG	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	342, 1152
SatI	GCNGC	8 cut(s)	324, 499, 576, 762, 996, 999, 1201, 1223
Sau3AI	GATC	4 cut(s)	163, 225, 854, 949
Sau96I	GGNCC	5 cut(s)	275, 280, 704, 984, 1106
SchI	GAGTC	2 cut(s)	747, 1249
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	427, 1252
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	641
SinI	GGWCC	3 cut(s)	280, 704, 1106
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
Sse9I	AATT	3 cut(s)	410, 1144, 1149
SsiI	CCGC	3 cut(s)	267, 422, 1200
SspMI	CTAG	3 cut(s)	692, 959, 1282
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	542, 1231
TaaI	ACNGT	3 cut(s)	7, 1123, 1277
TaqI	TCGA	3 cut(s)	146, 297, 641
TaqII	GACCGA	1 cut(s)	1057
TasI	AATT	3 cut(s)	410, 1144, 1149
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	1 cut(s)	1203
TfiI	GAWTC	3 cut(s)	508, 656, 1184
Tru1I	TTAA	2 cut(s)	342, 1152
Tru9I	TTAA	2 cut(s)	342, 1152
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	7 cut(s)	323, 498, 575, 761, 995, 998, 1222
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	7 cut(s)	185, 283, 474, 495, 572, 615, 936
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	3 cut(s)	280, 704, 1106
XceI	RCATGY	2 cut(s)	24, 728
XmnI	GAANNNNTTC	2 cut(s)	104, 526
XspI	CTAG	3 cut(s)	692, 959, 1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.