Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011722

Physical Location & Seq

Genomic Coordinates Reverse (-)

84462138 .. 84463987

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGACAGTCAAGAAAATCACATGTTGGTCTATAGTCCCAAGTTGCTACAAGTCTGAGTTCCAAGCTCCCAAGAACAAAGCAAAGGTGATAGCAAAGCAGAACTCATTCCAGAGGCTTTCGCTTTCGGATTTGAGCAATCCCAGCTCGACTACACTTTCAGAAGATCTCTCCATATCTCTTGCAGGCTCCAATCTTCATATTTTCACACTTGGGGAGCTGAAGGTGATCACACAGAGCTTCTCATCCAGCAACTTTCTTGGAGAGGGCGGGTTTGGGCCGGTCCACAAAGGGTTCATCGATGACAAGCTTAGACCCGGTTTGGCTGCTCAGCCTGTGGCTGTTAAGCTCTTGGACTTGGATGGAACACAGGGGCATAGAGAGTGGTTGACTGAGCTTAGAGAATCAGCTATTCAGAAAATCTGGTCTACAGGGTATTCAGTATCACTGCCATGGTCAACCAGAATGAAGATTGCTCTTGGGGCTGCAAAGGGTCTTGCTTTCCTACATGAAGCAGAGAAACCAGTTATATACCGAGATTTCAAAGCTTCGAACATCTTGTTAGATTCTGACTATACTCCCAAGCTCTCAGATTTTGGTCTAGCAAAAGATGGTCCAGAAGGAGATGACACACATGTTTCAACAAGAGTCATGGGAACACAAGGCTATGCTGCTCCTGAATACATTATGACAGGTCACTTGACGGCGATGAGTGATGTGTATAGCTTCGGAGTGGTACTATTGGAGCTACTAACAGGAAGGAGATCGGTGGAGAAGAGCCGTCCTCATAGAGAGCAGAACTTAGTAGAATGGGCAAGGCCAATGCTGAATGAACCCCGAAAACTCAGCCGAATAATGGATCCGAGACTAGAAGGACAATACTCTGAAATGGGGGCCAGAAAGGCTGCTGCATTGGCTTACCAATGCCTGAGCCACCGGCCTAAACAAAGACCGAAAATGTGTGATGTGGTGAAGACATTAGAGCCCCTCAAGGATTTTGATGACATTCCCATTGGACCGTTTGTGTACACAGTTCCTACTGATAAATCCGATAATGTTGTAGGATATATGTATCGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

39.94

Weight (kDa)

8.83

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	148 - 326	7.9e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	153 - 324	9.9e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05940 AT5G35580 AT5G35580
fragaria_vesca	FvH4_1g08770 FvH4_1g08770 FvH4_1g08770
malus_domestica	MD02G1091900.v1.1 MD15G1218000.v1.1 MD16G1288200.v1.1
prunus_persica	Prupe.7G198400_v2.0.a1
pyrus_communis	pycom15g19360
rosa_chinensis	RchiOBHm_Chr2g0095161
rosa_laevigata	RLG00000016542
rosa_multiflora	Rmu_ssc0000183.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146570
rosa_samantha	Rh2AG096700 Rh2BG098000 Rh2CG100000
rosa_wichuraiana	Rw2G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	2 cut(s)	851, 864
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	2 cut(s)	735, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	853
AflIII	ACRYGT	2 cut(s)	20, 631
AgsI	TTSAA	2 cut(s)	541, 639
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	2 cut(s)	851, 864
AoxI	GGCC	4 cut(s)	275, 815, 891, 935
ApeKI	GCWGC	5 cut(s)	323, 482, 668, 902, 905
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	5 cut(s)	275, 280, 611, 891, 1013
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	97, 235, 979
AsuII	TTCGAA	1 cut(s)	548
AvaII	GGWCC	3 cut(s)	280, 611, 1013
BamHI	GGATCC	1 cut(s)	856
BanII	GRGCYC	1 cut(s)	984
BbsI	GAAGAC	1 cut(s)	977
BbvI	GCAGC	5 cut(s)	310, 469, 655, 889, 892
BccI	CCATC	2 cut(s)	353, 602
BceAI	ACGGC	2 cut(s)	717, 762
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	2 cut(s)	599, 866
BfmI	CTRYAG	2 cut(s)	30, 426
BglI	GCCNNNNNGGC	1 cut(s)	899
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	5 cut(s)	324, 483, 669, 903, 906
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	5 cut(s)	325, 484, 670, 904, 907
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	3 cut(s)	280, 611, 1013
BmgT120I	GGNCC	5 cut(s)	275, 280, 611, 891, 1013
BmiI	GGNNCC	3 cut(s)	187, 858, 892
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	977
BplI	GAGNNNNNCTC	2 cut(s)	766, 798
Bpu10I	CCTNAGC	1 cut(s)	926
Bpu1102I	GCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
Bse118I	RCCGGY	2 cut(s)	277, 933
Bse1I	ACTGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	242, 364
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseMII	CTCAG	6 cut(s)	45, 341, 381, 600, 856, 917
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	5 cut(s)	310, 469, 655, 889, 892
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	4 cut(s)	277, 817, 893, 937
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	278, 315, 934
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	277, 817, 893, 937
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	4 cut(s)	163, 225, 761, 856
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	4 cut(s)	277, 817, 893, 937
BspCNI	CTCAG	6 cut(s)	46, 340, 382, 599, 855, 918
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	187, 858, 892
BspPI	GGATC	2 cut(s)	851, 864
BspQI	GCTCTTC	1 cut(s)	767
BspT104I	TTCGAA	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	277, 933
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	2 cut(s)	277, 933
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	4 cut(s)	163, 225, 761, 856
BssT1I	CCWWGG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	7, 1017, 1030
Bst6I	CTCTTC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	1023
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	9 cut(s)	54, 308, 327, 390, 395, 586, 799, 842, 926
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	242, 364
BstKTI	GATC	4 cut(s)	166, 228, 764, 859
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	4 cut(s)	163, 225, 761, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 479, 899, 911
BstNSI	RCATGY	2 cut(s)	24, 635
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	30, 426
BstV1I	GCAGC	5 cut(s)	310, 469, 655, 889, 892
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	2 cut(s)	163, 856
BstYI	RGATCY	2 cut(s)	163, 856
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	4 cut(s)	277, 817, 893, 937
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	242, 364
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	277, 933
Cfr13I	GGNCC	5 cut(s)	275, 280, 611, 891, 1013
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	734, 1024
CviAII	CATG	5 cut(s)	21, 450, 506, 632, 649
CviQI	GTAC	2 cut(s)	734, 1024
DdeI	CTNAG	9 cut(s)	54, 308, 327, 390, 395, 586, 799, 842, 926
DpnI	GATC	4 cut(s)	165, 227, 763, 858
DpnII	GATC	4 cut(s)	163, 225, 761, 856
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	984
Eco47I	GGWCC	3 cut(s)	280, 611, 1013
Eco57I	CTGAAG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	5 cut(s)	24, 453, 509, 635, 652
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	20, 449, 505, 631, 648
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	5 cut(s)	324, 483, 669, 903, 906
FokI	GGATG	2 cut(s)	229, 371
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	5 cut(s)	324, 483, 669, 903, 906
FspBI	CTAG	2 cut(s)	599, 866
GluI	GCNGC	5 cut(s)	324, 483, 669, 903, 906
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	4 cut(s)	277, 817, 893, 937
HapII	CCGG	3 cut(s)	278, 315, 934
Hin1II	CATG	5 cut(s)	24, 453, 509, 635, 652
HincII	GTYRAC	2 cut(s)	387, 456
HindII	GTYRAC	2 cut(s)	387, 456
HindIII	AAGCTT	2 cut(s)	305, 543
HinfI	GANTC	3 cut(s)	401, 563, 645
HpaII	CCGG	3 cut(s)	278, 315, 934
HphI	GGTGA	3 cut(s)	97, 235, 979
Hpy166II	GTNNAC	6 cut(s)	283, 387, 426, 456, 1024, 1026
Hpy188III	TCNNGA	4 cut(s)	10, 109, 614, 674
Hpy8I	GTNNAC	6 cut(s)	283, 387, 426, 456, 1024, 1026
HpyAV	CCTTC	4 cut(s)	214, 611, 750, 863
HpyCH4III	ACNGT	3 cut(s)	7, 1017, 1030
HpyCH4V	TGCA	3 cut(s)	182, 485, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 479, 899, 911
HpyF3I	CTNAG	9 cut(s)	54, 308, 327, 390, 395, 586, 799, 842, 926
Hsp92II	CATG	5 cut(s)	24, 453, 509, 635, 652
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	163, 225, 761, 856
LguI	GCTCTTC	1 cut(s)	767
LmnI	GCTCC	5 cut(s)	70, 191, 214, 676, 742
Lsp1109I	GCAGC	5 cut(s)	310, 469, 655, 889, 892
MaeI	CTAG	2 cut(s)	599, 866
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	4 cut(s)	165, 227, 763, 858
MboI	GATC	4 cut(s)	163, 225, 761, 856
MboII	GAAGA	5 cut(s)	173, 185, 478, 784, 982
MflI	RGATCY	2 cut(s)	163, 856
MhlI	GDGCHC	1 cut(s)	984
MlyI	GAGTC	1 cut(s)	654
MnlI	CCTC	4 cut(s)	105, 256, 792, 995
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	448
MspI	CCGG	3 cut(s)	278, 315, 934
MspR9I	CCNGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	141, 479, 899, 911
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	4 cut(s)	163, 225, 761, 856
NlaIII	CATG	5 cut(s)	24, 453, 509, 635, 652
NlaIV	GGNNCC	3 cut(s)	187, 858, 892
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	2 cut(s)	24, 635
NspV	TTCGAA	1 cut(s)	548
PciI	ACATGT	2 cut(s)	20, 631
PciSI	GCTCTTC	1 cut(s)	767
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	401, 563
PkrI	GCNGC	5 cut(s)	325, 484, 670, 904, 907
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PscI	ACATGT	2 cut(s)	20, 631
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	187, 858, 892
PspPI	GGNCC	5 cut(s)	275, 280, 611, 891, 1013
PsuI	RGATCY	2 cut(s)	163, 856
RsaI	GTAC	2 cut(s)	735, 1025
RsaNI	GTAC	2 cut(s)	734, 1024
RseI	CAYNNNNRTG	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	5 cut(s)	324, 483, 669, 903, 906
Sau3AI	GATC	4 cut(s)	163, 225, 761, 856
Sau96I	GGNCC	5 cut(s)	275, 280, 611, 891, 1013
SchI	GAGTC	1 cut(s)	654
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	984
SfcI	CTRYAG	2 cut(s)	30, 426
SfuI	TTCGAA	1 cut(s)	548
SinI	GGWCC	3 cut(s)	280, 611, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	599, 866
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	3 cut(s)	7, 1017, 1030
TaqI	TCGA	3 cut(s)	146, 297, 548
TaqII	GACCGA	1 cut(s)	964
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	2 cut(s)	401, 563
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	5 cut(s)	323, 482, 668, 902, 905
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	185, 283, 479, 522, 843
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	3 cut(s)	280, 611, 1013
XceI	RCATGY	2 cut(s)	24, 635
XmiI	GTMKAC	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	2 cut(s)	599, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.