MD17G1020300.v1.1

Class I heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016908
Physical Location & Seq
Reverse (-)
1535600 .. 1536025
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1020300.v1.1.491

Sequence Viewer

Length: 426 bp
ATGTCACTCATTTCCCAAGTGTTTGGCGATGAAATATTCGACCCATTTCTCTCCTTGATCAACAAGTGTCCTGTCCTCAACACCCCAACCGACTGGAAGGAAACCCTAGACGCCCATGTGTTTGTTTTCGACCTTCCGGGGCTGAAGAAGGAGGAGGTCAAGGTGGAGGTTACTGATGGAAGAGTGCTCCAGATAAGTGGCGAGAGGAATGAAGAAGAAAAAGATGAGAAGAGTAAGGATCGTAAAGATAGGTTTCACCGTGTCGAACGTTTCCGGGGCAAGTTCCTAAGGAGGTTCCGGCTGCCGGAAAATGCCAAGACAGATGAAGTTAAGGCATCTATGGAGAATGGGGTTCTAAAGGTCACTATTCCCAAGCATGAAGTTCAAAAACCTCCAAAGAAGGTTATTCAGATTGAAGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

7.83

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 31 - 138 5.8e-27 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016908)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g52210
malus_domestica MD17G1020300.v1.1
pyrus_communis pycom17g01690
rosa_chinensis RchiOBHm_Chr2g0173761
rosa_laevigata RLG00000022219
rosa_multiflora Rmu_sc0002538.1_g000002 Rmu_sc0003188.1_g000004
rosa_roxburghii Rroxscaffold_2G00078650
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651500 Rh2BG662100 Rh2CG626900 Rh2DG677300
rosa_wichuraiana Rw2G053480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 268
AclWI GGATC 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 386, 416
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 301
AsuC2I CCSGG 2 cut(s) 138, 275
AsuHPI GGTGA 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 288
BccI CCATC 1 cut(s) 170
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 2 cut(s) 138, 275
BfaI CTAG 1 cut(s) 107
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 138, 275
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 138, 275
BmsI GCATC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 138, 275
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 137, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 137, 274
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 4 cut(s) 137, 274, 298, 305
BslI CCNNNNNNNGG 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 57, 238
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 137, 274
BssMI GATC 2 cut(s) 57, 238
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 175, 224
BstACI GRCGYC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 287
BstKTI GATC 2 cut(s) 60, 241
BstMBI GATC 2 cut(s) 57, 238
BstSCI CCNGG 2 cut(s) 136, 273
BstV1I GCAGC 1 cut(s) 288
BstXI CCANNNNNNTGG 3 cut(s) 23, 93, 197
Bsu36I CCTNAGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 42
CseI GACGC 1 cut(s) 119
CviAII CATG 2 cut(s) 116, 377
CviJI RGCY 2 cut(s) 142, 301
CviKI_1 RGCY 2 cut(s) 142, 301
DdeI CTNAG 1 cut(s) 287
DpnI GATC 2 cut(s) 59, 240
DpnII GATC 2 cut(s) 57, 238
Eam1104I CTCTTC 2 cut(s) 175, 224
EarI CTCTTC 2 cut(s) 175, 224
Eco57I CTGAAG 1 cut(s) 164
Eco81I CCTNAGG 1 cut(s) 287
FaeI CATG 2 cut(s) 119, 380
FaiI YATR 3 cut(s) 117, 341, 378
FatI CATG 2 cut(s) 115, 376
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 4 cut(s) 137, 274, 298, 305
HgaI GACGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 119, 380
HpaII CCGG 4 cut(s) 137, 274, 298, 305
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 1 cut(s) 190
HpyAV CCTTC 5 cut(s) 91, 142, 143, 394, 410
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 119, 380
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 238
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 79, 84, 150, 203, 287, 311, 318
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 3 cut(s) 3, 169, 361
MalI GATC 2 cut(s) 59, 240
MboI GATC 2 cut(s) 57, 238
MboII GAAGA 5 cut(s) 157, 192, 224, 227, 241
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 421
MnlI CCTC 7 cut(s) 86, 145, 148, 160, 198, 285, 402
MseI TTAA 2 cut(s) 330, 424
MspI CCGG 4 cut(s) 137, 274, 298, 305
MspR9I CCNGG 2 cut(s) 138, 275
NciI CCSGG 2 cut(s) 138, 275
NdeII GATC 2 cut(s) 57, 238
NlaIII CATG 2 cut(s) 119, 380
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 3, 361
PkrI GCNGC 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 330, 424
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 57, 238
ScrFI CCNGG 2 cut(s) 138, 275
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 1 cut(s) 344
Sse9I AATT 1 cut(s) 421
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 136, 273
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 39, 129, 264
TasI AATT 1 cut(s) 421
Tru1I TTAA 2 cut(s) 330, 424
Tru9I TTAA 2 cut(s) 330, 424
TseFI GTSAC 2 cut(s) 3, 361
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 2 cut(s) 3, 361
TspDTI ATGAA 4 cut(s) 45, 225, 339, 393
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.