Rmu_sc0003188.1_g000004

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003188.1
OG0016908
Physical Location & Seq
Forward (+)
17201 .. 17644
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003188.1_g000004.1.cds

Sequence Viewer

Length: 444 bp
atgcaatcagacatgtcactcatttcccaactgtttggggatgaaacattggatcccttcctttctatgattaaccagtgtccagtgctcagcaccccaactgattggaaggagacccctaaagcccacgttttcgtttccgacctgccagggctgaagaaagaggaggtgaaagtggaggttgacgatggcagagtgctccaaataagcggcgagaggaaagtggaagaagaaaatggtggcggtgataagaaggatcgtcagtataagtggcaccgtgtcgaacgttgccgtggcaagttcctcaggaggtttaagctaccggaaaatgccaagactgatgacattcaggcgtccatggagaacggagtgcttactgtcactgttcccaagcaggaggttccaaaacctcaaaggaaggtcgttgagattgaagcacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

147

Amino Acids

16.82

Weight (kDa)

5.97

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016908)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g52210
malus_domestica MD17G1020300.v1.1
pyrus_communis pycom17g01690
rosa_chinensis RchiOBHm_Chr2g0173761
rosa_laevigata RLG00000022219
rosa_multiflora Rmu_sc0002538.1_g000002 Rmu_sc0003188.1_g000004
rosa_roxburghii Rroxscaffold_2G00078650
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651500 Rh2BG662100 Rh2CG626900 Rh2DG677300
rosa_wichuraiana Rw2G053480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 2 cut(s) 210, 243
AclI AACGTT 1 cut(s) 286
AclWI GGATC 3 cut(s) 47, 60, 264
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw21I GWGCWC 2 cut(s) 90, 201
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 47, 60, 264
AsuHPI GGTGA 2 cut(s) 181, 257
AxyI CCTNAGG 1 cut(s) 305
BamHI GGATCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 90, 201
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 1 cut(s) 211
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 54, 275, 402
BmrFI CCNGG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 149, 292, 357
BsaWI WCCGGW 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 76, 83
Bse21I CCTNAGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 149, 292, 357
BseGI GGATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 103, 319
BseNI ACTGG 2 cut(s) 76, 83
BseRI GAGGAG 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 90, 201
BsiSI CCGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 90, 201
Bsp143I GATC 2 cut(s) 52, 256
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 210, 243
BspCNI CTCAG 2 cut(s) 102, 318
BspLI GGNNCC 3 cut(s) 54, 275, 402
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 47, 60, 264
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 2 cut(s) 76, 83
BssECI CCNNGG 3 cut(s) 149, 292, 357
BssMI GATC 2 cut(s) 52, 256
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 4 cut(s) 33, 278, 379, 385
BstACI GRCGYC 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 89, 305
BstDSI CCRYGG 2 cut(s) 292, 357
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 55, 259
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 52, 256
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 2 cut(s) 35, 105
BstYI RGATCY 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 305
BtgI CCRYGG 2 cut(s) 292, 357
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 3 cut(s) 83, 90, 381
BveI ACCTGC 1 cut(s) 153
CseI GACGC 1 cut(s) 342
CviAII CATG 2 cut(s) 13, 358
CviJI RGCY 3 cut(s) 125, 154, 319
CviKI_1 RGCY 3 cut(s) 125, 154, 319
DdeI CTNAG 2 cut(s) 89, 305
DpnI GATC 2 cut(s) 54, 258
DpnII GATC 2 cut(s) 52, 256
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 16, 361
FaiI YATR 4 cut(s) 14, 68, 267, 359
FatI CATG 2 cut(s) 12, 357
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 2 cut(s) 16, 361
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 181, 257
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 10, 142
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 4 cut(s) 67, 103, 247, 412
HpyCH4III ACNGT 4 cut(s) 33, 278, 379, 385
HpyCH4IV ACGT 2 cut(s) 129, 286
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 89, 305
HpySE526I ACGT 2 cut(s) 129, 286
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 2 cut(s) 16, 361
Kzo9I GATC 2 cut(s) 52, 256
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 9 cut(s) 89, 96, 135, 158, 162, 292, 335, 336, 380
MaeII ACGT 2 cut(s) 129, 286
MaeIII GTNAC 2 cut(s) 15, 379
MalI GATC 2 cut(s) 54, 258
MboI GATC 2 cut(s) 52, 256
MboII GAAGA 3 cut(s) 169, 239, 242
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 90, 201
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 157, 160, 172, 210, 303, 314, 391, 420
MseI TTAA 3 cut(s) 72, 315, 442
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 357
NdeII GATC 2 cut(s) 52, 256
NlaIII CATG 2 cut(s) 16, 361
NlaIV GGNNCC 3 cut(s) 54, 275, 402
NmuCI GTSAC 2 cut(s) 15, 379
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PkrI GCNGC 1 cut(s) 212
PscI ACATGT 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 54, 275, 402
PsuI RGATCY 1 cut(s) 52
SaqAI TTAA 3 cut(s) 72, 315, 442
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 52, 256
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 90, 201
SsiI CCGC 2 cut(s) 210, 243
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 4 cut(s) 33, 278, 379, 385
TaiI ACGT 2 cut(s) 132, 289
TaqI TCGA 1 cut(s) 282
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 3 cut(s) 72, 315, 442
Tru9I TTAA 3 cut(s) 72, 315, 442
TscAI CASTG 3 cut(s) 83, 90, 388
TseFI GTSAC 2 cut(s) 15, 379
Tsp45I GTSAC 2 cut(s) 15, 379
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 3 cut(s) 83, 90, 388
XceI RCATGY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.