Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009515

Physical Location & Seq

Genomic Coordinates Forward (+)

12058424 .. 12060310

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1134600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTGTTGATTGTTATATTAATGATTTTGGCTTTCGTAGGTGTTTTGGAAGATGACCAAGTTATTCTGGATCGAAATAGCAAACTGGGGATGTTTCTCCGTCGTTGCATATTTGCGTTTAATCTTTTATCCTTTGAGCAACCCATGGATATGGGCATTGGTGGACATGAGTTTTGTGTTTGTGTTGTGCTTATCGTTGTTAGATTTTATAGGAAGGAAAGCTTTGACAGGGAACTACCATTTCATATGATTCTAATATTATTGCAGGGTGCAAGCCATCTTTTGACAAGTATAGAGATGTACTGTAAAGAAGCCATCTCAAGTTATCCTCCATATGAGTCGCCTCACTTGGATGATTCAAGTAATGATTTAGAAACGCCTCCAGAATATGAGAACATGGAACTGGAGAATCTTGTTTTTGAAAAAGTCACTGAAGAAATCGAAGCAAGACAAAGAGCTGGTGGAAGTGTTTCTTTTAATCTTCATGCACCCAAAGCACTTATTGGATTGGTTGAAGATATTGAAGTCCCTGGTGATCCAGAATTCAAACATGGTGGCAATAGAGAAGATTGTCATTATGCACATCCTACAAGCAGTATATTAAGTGATCTTGATCCCACTGCTGGGCTATTCCTACAGACAAACTGGCAGATACAGGGATTTTTACAGGAGCAAGCTGATGCACTTGAAAAGCAGGGGAGCTCTTTCTCTTTAAATGCTTTTGAGCTCACGCTTAAGCAGCTTCAAAAACTGGCACCAGAGCTACATCACGTTCACTTCTTGCGTTACTGGAATGGTCTGTATCATGATGATTTTTTTTGCTGCTTTGGAGAATGCTCACTGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04657 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04657 map04914 map05166

Pfam Domains

Protein Families

ANAPC5

Protein Analysis

284

Amino Acids

32.31

Weight (kDa)

4.74

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06590
fragaria_vesca	FvH4_6g38720 FvH4_6g38720 FvH4_6g38720 FvH4_6g38720
malus_domestica	MD09G1148300.v1.1 MD17G1134600.v1.1
prunus_persica	Prupe.3G177800_v2.0.a1 Prupe.3G177800_v2.0.a1
pyrus_communis	pycom09g06800
rosa_chinensis	RchiOBHm_Chr2g0152251
rosa_laevigata	RLG00000020624
rosa_multiflora	Rmu_sc0003043.1_g000005
rosa_roxburghii	Rroxscaffold_2G00095840
rosa_rugosa	Rorug02G0431700 Rorug02G0431800
rosa_samantha	Rh2AG493500 Rh2BG505800 Rh2CG479700 Rh2DG516900
rosa_wichuraiana	Rw2G040540 Rw2G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	754
AclWI	GGATC	3 cut(s)	78, 530, 608
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	623, 624
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	7 cut(s)	360, 422, 515, 524, 547, 689, 746
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	7 cut(s)	222, 458, 677, 702, 727, 742, 763
AluI	AGCT	7 cut(s)	222, 458, 677, 702, 727, 742, 763
Alw21I	GWGCWC	2 cut(s)	704, 729
AlwI	GGATC	3 cut(s)	78, 530, 608
ApeKI	GCWGC	2 cut(s)	739, 822
ApoI	RAATTY	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	2 cut(s)	704, 729
Bbv12I	GWGCWC	2 cut(s)	704, 729
BbvI	GCAGC	2 cut(s)	751, 809
BccI	CCATC	2 cut(s)	285, 323
BciT130I	CCWGG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	635
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	2 cut(s)	740, 823
BlsI	GCNGC	2 cut(s)	741, 824
Bme1390I	CCNGG	1 cut(s)	531
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	366, 425
BpuEI	CTTGAG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	144, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 624
Bse1I	ACTGG	5 cut(s)	90, 408, 650, 756, 794
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	144, 529
BseGI	GGATG	3 cut(s)	96, 358, 583
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	623, 624
BseNI	ACTGG	5 cut(s)	90, 408, 650, 756, 794
BseXI	GCAGC	2 cut(s)	751, 809
BseYI	CCCAGC	1 cut(s)	623
BshNI	GGYRCC	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	704, 729
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	623, 624
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	704, 729
Bsp143I	GATC	4 cut(s)	70, 535, 607, 613
Bsp19I	CCATGG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	3 cut(s)	78, 530, 608
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	734
BsrI	ACTGG	5 cut(s)	90, 408, 650, 756, 794
BssECI	CCNNGG	2 cut(s)	144, 529
BssMI	GATC	4 cut(s)	70, 535, 607, 613
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	305
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	274, 675
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	96, 358, 583
BstKTI	GATC	4 cut(s)	73, 538, 610, 616
BstMBI	GATC	4 cut(s)	70, 535, 607, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 739
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	635
BstV1I	GCAGC	2 cut(s)	751, 809
BstXI	CCANNNNNNTGG	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	96, 358, 583
BtsI	GCAGTG	2 cut(s)	618, 839
BtsIMutI	CAGTG	3 cut(s)	429, 618, 839
Cac8I	GCNNGC	2 cut(s)	274, 675
CciI	TCATGA	1 cut(s)	805
Csp6I	GTAC	1 cut(s)	301
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	6 cut(s)	145, 167, 397, 485, 551, 806
CviQI	GTAC	1 cut(s)	301
DpnI	GATC	4 cut(s)	72, 537, 609, 615
DpnII	GATC	4 cut(s)	70, 535, 607, 613
DraI	TTTAAA	1 cut(s)	714
Ecl136II	GAGCTC	2 cut(s)	702, 727
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	704, 729
Eco53kI	GAGCTC	2 cut(s)	702, 727
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	2 cut(s)	702, 727
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	704, 729
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	6 cut(s)	148, 170, 400, 488, 554, 809
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 457, 489
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	6 cut(s)	144, 166, 396, 484, 550, 805
FauNDI	CATATG	2 cut(s)	246, 334
Fnu4HI	GCNGC	2 cut(s)	740, 823
FokI	GGATG	3 cut(s)	103, 365, 570
FriOI	GRGCYC	2 cut(s)	704, 729
Fsp4HI	GCNGC	2 cut(s)	740, 823
GluI	GCNGC	2 cut(s)	740, 823
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	2 cut(s)	366, 425
Hin1II	CATG	6 cut(s)	148, 170, 400, 488, 554, 809
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	4 cut(s)	250, 338, 356, 409
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	164, 775
Hpy188III	TCNNGA	5 cut(s)	68, 383, 539, 611, 806
Hpy8I	GTNNAC	2 cut(s)	164, 775
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	6 cut(s)	108, 265, 272, 488, 581, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 739
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	6 cut(s)	148, 170, 400, 488, 554, 809
Kzo9I	GATC	4 cut(s)	70, 535, 607, 613
LmnI	GCTCC	2 cut(s)	670, 699
Lsp1109I	GCAGC	2 cut(s)	751, 809
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	427, 785
MalI	GATC	4 cut(s)	72, 537, 609, 615
MboI	GATC	4 cut(s)	70, 535, 607, 613
MboII	GAAGA	5 cut(s)	62, 446, 473, 527, 578
MhlI	GDGCHC	2 cut(s)	704, 729
MluCI	AATT	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	339, 354, 390
MroXI	GAANNNNTTC	1 cut(s)	469
MseI	TTAA	6 cut(s)	20, 120, 477, 602, 713, 735
MslI	CAYNNNNRTG	2 cut(s)	149, 351
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	494, 739
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	2 cut(s)	246, 334
NdeII	GATC	4 cut(s)	70, 535, 607, 613
NlaIII	CATG	6 cut(s)	148, 170, 400, 488, 554, 809
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	805
PctI	GAATGC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	250, 356, 409
PkrI	GCNGC	2 cut(s)	741, 824
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	704, 729
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	756
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	2 cut(s)	149, 351
SacI	GAGCTC	2 cut(s)	704, 729
SaqAI	TTAA	6 cut(s)	20, 120, 477, 602, 713, 735
SatI	GCNGC	2 cut(s)	740, 823
Sau3AI	GATC	4 cut(s)	70, 535, 607, 613
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	704, 729
SetI	ASST	9 cut(s)	43, 224, 460, 679, 704, 729, 744, 765, 774
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	149, 351
SmlI	CTYRAG	2 cut(s)	319, 734
SmoI	CTYRAG	2 cut(s)	319, 734
Sse9I	AATT	1 cut(s)	542
SspI	AATATT	1 cut(s)	258
SstI	GAGCTC	2 cut(s)	704, 729
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	2 cut(s)	73, 441
TasI	AATT	1 cut(s)	542
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	250, 356, 409
Tru1I	TTAA	6 cut(s)	20, 120, 477, 602, 713, 735
Tru9I	TTAA	6 cut(s)	20, 120, 477, 602, 713, 735
TscAI	CASTG	3 cut(s)	436, 625, 846
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	739, 822
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	233, 473
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	3 cut(s)	436, 625, 846
Vha464I	CTTAAG	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	20
XapI	RAATTY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.