Rorug02G0431800

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009515
Physical Location & Seq
Reverse (-)
55340221 .. 55341885
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0431800.1

Sequence Viewer

Length: 1122 bp
ATGACGTCCACAATTTGTAAGAAAGAAATCTTGATGGACATCCTAGTAAGACTACCTGCAAAAACCCTAATGCGGTTTTTATGTGCATGCAAAGCATGGAATGATTTGATTAGCAGCCCAGATTTTGTCTCTACAAATCTTAACACAAATATCACAAAACGCAGAAATATGCATCTACTCTGCCTCCACCACCCGGATTTTAAACGGGTGGTCGATTTGGAGGATCCATATGTTAAACAAGCTCTTCAATGGTCTTTCTTTCACTATGAAACATTTGAGCAGGGCTTGGGGTTAAGCCATCCCTCAGGGAGCACAGAACATTATGGGATGTATGGTTCAAGCAATGGATTAGTTTGCATTTCGAATCCGGACGAAGTTTTGAATAGCAGGAGTCCTATAATCATATGGAACCCGTCCATTAAGAAATTTAAGACGCTTCCATCGACCACAAACAATAAATTTCGCTATATGTCCCTCCAATTTGGGTTCCATCCCGGGGTTAATGACTACAAGGTAGTAAGAATGATGCGGATCAACAAGGATGCCTTCGCAGTAGAAGTTTATTCTCTTAGCACCAACTCTTGGAAGATGATCGAAGAAATTCCTCCATGGTTAAAATGCAATTTTAAATATCTTGAAGGTACGTTCATAAATGGAGTAGCCTACCGAATTCTTGAGAAAGGTTTTATGTATAGCCTCATGTCCTTCGATTCGGGCAGTGAAGAATTCGAAGAATTCATTCTACCAGAGTCCGTCATCAGTTCACATAATTTACATATCTACCCTTTCGAGGAAAAGCCTTGCTTGATTTTTCACTGGTATATTTCTGATGAGGAGGGCTTTGATAGAGGTGAGTTCTTTGTTTTTCAAGACAAACGTTGGAAACTTATGCACCCTTTTTACTATCCTTCGCGTTGTTATCATACGATCGGGGTTAGTATAGATAATGAAGTGGTAATGGAGACAAGAGACTACTGTAATGGTGTAGCAGATTTGTTTTTGGTGAATTACGAAACCAGGGAAGTTCGTGAAACAGGAATTAAGTTGGCCATCACGAGAATTGGCTATAACGAACATTTCTTTGTATTTACTTACGCAGAAAGTTTGGTATTACCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04657 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04657 map04914 map05166
Pfam Domains
Protein Families
ANAPC5

Protein Analysis

373

Amino Acids

43.66

Weight (kDa)

6.13

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 40 5.8e-06 F-box-like
F-box PF00646 9 - 42 9.4e-06 F-box domain
FBA_3 PF08268 106 - 351 5.7e-21 F-box associated beta propeller domain
FBA_1 PF07734 114 - 249 1.7e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 582
AccII CGCG 1 cut(s) 913
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 2 cut(s) 73, 529
AclI AACGTT 1 cut(s) 877
AclWI GGATC 3 cut(s) 218, 231, 539
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
AgsI TTSAA 5 cut(s) 248, 339, 382, 638, 869
AjnI CCWGG 1 cut(s) 1016
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 3 cut(s) 133, 956, 963
AlwI GGATC 3 cut(s) 218, 231, 539
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 1 cut(s) 1047
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
Asp700I GAANNNNTTC 2 cut(s) 600, 738
AsuC2I CCSGG 3 cut(s) 194, 495, 496
AsuHPI GGTGA 2 cut(s) 863, 1015
AsuII TTCGAA 2 cut(s) 362, 729
AvaI CYCGRG 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 304
BalI TGGCCA 1 cut(s) 1049
BamHI GGATCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 1054
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 126
BccI CCATC 5 cut(s) 28, 306, 448, 498, 1058
BciT130I CCWGG 1 cut(s) 1018
BcnI CCSGG 3 cut(s) 194, 495, 496
BcoDI GTCTC 3 cut(s) 133, 956, 963
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 4 cut(s) 194, 495, 496, 1018
BmeT110I CYCGRG 1 cut(s) 494
BmiI GGNNCC 3 cut(s) 225, 410, 488
BmrFI CCNGG 4 cut(s) 194, 495, 496, 1018
BmsI GCATC 3 cut(s) 181, 516, 532
Bpu14I TTCGAA 2 cut(s) 362, 729
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 3 cut(s) 194, 495, 496
BsaBI GATNNNNATC 2 cut(s) 38, 530
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 494, 495, 608, 1017
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
Bse1I ACTGG 1 cut(s) 821
Bse21I CCTNAGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 2 cut(s) 38, 530
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 1018
BseDI CCNNGG 4 cut(s) 494, 495, 608, 1017
BseGI GGATG 5 cut(s) 39, 298, 333, 490, 547
BseJI GATNNNNATC 2 cut(s) 38, 530
BseLI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 1 cut(s) 848
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 913
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 3 cut(s) 194, 368, 495
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
BsmAI GTCTC 3 cut(s) 133, 956, 963
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 1 cut(s) 1049
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 2 cut(s) 362, 729
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 223, 531, 591, 927
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 2 cut(s) 73, 529
BspANI GGCC 1 cut(s) 1049
BspCNI CTCAG 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 225, 410, 488
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 3 cut(s) 218, 231, 539
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 2 cut(s) 362, 729
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 494, 495, 608, 1017
BssMI GATC 4 cut(s) 223, 531, 591, 927
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1054
BssT1I CCWWGG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 1054
Bst2UI CCWGG 1 cut(s) 1018
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 2 cut(s) 362, 729
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 304, 569
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 5 cut(s) 39, 298, 333, 490, 547
BstFNI CGCG 1 cut(s) 913
BstKTI GATC 4 cut(s) 226, 534, 594, 930
BstMAI GTCTC 3 cut(s) 133, 956, 963
BstMBI GATC 4 cut(s) 223, 531, 591, 927
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 1018
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 4 cut(s) 192, 493, 494, 1016
BstUI CGCG 1 cut(s) 913
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 1 cut(s) 1049
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 5 cut(s) 39, 298, 333, 490, 547
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 724, 814
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 88
Cfr9I CCCGGG 1 cut(s) 494
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 642
CviAII CATG 4 cut(s) 87, 96, 609, 700
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 2 cut(s) 304, 569
DpnI GATC 4 cut(s) 225, 533, 593, 929
DpnII GATC 4 cut(s) 223, 531, 591, 927
DraI TTTAAA 2 cut(s) 202, 628
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 494
EcoRI GAATTC 3 cut(s) 669, 725, 734
EcoRII CCWGG 1 cut(s) 1016
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 4 cut(s) 90, 99, 612, 703
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 788, 820
FaqI GGGAC 1 cut(s) 457
FatI CATG 4 cut(s) 86, 95, 608, 699
FauNDI CATATG 2 cut(s) 229, 404
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 5 cut(s) 26, 285, 340, 477, 554
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 1049
HapII CCGG 3 cut(s) 194, 368, 495
HgaI GACGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 90, 99, 612, 703
HinfI GANTC 4 cut(s) 364, 391, 710, 749
HpaII CCGG 3 cut(s) 194, 368, 495
HphI GGTGA 2 cut(s) 863, 1015
Hpy166II GTNNAC 2 cut(s) 9, 764
Hpy188I TCNGA 1 cut(s) 829
Hpy188III TCNNGA 7 cut(s) 31, 368, 635, 674, 869, 1028, 1054
Hpy8I GTNNAC 2 cut(s) 9, 764
HpyAV CCTTC 4 cut(s) 556, 632, 715, 918
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 3 cut(s) 5, 644, 877
HpyCH4V TGCA 7 cut(s) 59, 86, 90, 172, 357, 621, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 304, 569
HpySE526I ACGT 3 cut(s) 5, 644, 877
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 90, 99, 612, 703
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 223, 531, 591, 927
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 3 cut(s) 181, 516, 532
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 5, 644, 877
MalI GATC 4 cut(s) 225, 533, 593, 929
MboI GATC 4 cut(s) 223, 531, 591, 927
MboII GAAGA 5 cut(s) 236, 598, 608, 734, 743
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 1049
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 2 cut(s) 400, 758
MmeI TCCRAC 1 cut(s) 860
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 174
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 600, 738
MscI TGGCCA 1 cut(s) 1049
Msp20I TGGCCA 1 cut(s) 1049
MspI CCGG 3 cut(s) 194, 368, 495
MspR9I CCNGG 4 cut(s) 194, 495, 496, 1018
MvaI CCWGG 1 cut(s) 1018
MvnI CGCG 1 cut(s) 913
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 3 cut(s) 194, 495, 496
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 2 cut(s) 229, 404
NdeII GATC 4 cut(s) 223, 531, 591, 927
NlaIII CATG 4 cut(s) 90, 99, 612, 703
NlaIV GGNNCC 3 cut(s) 225, 410, 488
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 1 cut(s) 90
NspV TTCGAA 2 cut(s) 362, 729
PaeI GCATGC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdmI GAANNNNTTC 2 cut(s) 600, 738
PfeI GAWTC 2 cut(s) 364, 710
PflMI CCANNNNNTGG 1 cut(s) 582
PkrI GCNGC 1 cut(s) 116
Ple19I CGATCG 1 cut(s) 930
PleI GAGTC 2 cut(s) 399, 757
PpsI GAGTC 2 cut(s) 399, 757
Psp1406I AACGTT 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 1016
PspN4I GGNNCC 3 cut(s) 225, 410, 488
PsuI RGATCY 1 cut(s) 223
PvuI CGATCG 1 cut(s) 930
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 4 cut(s) 223, 531, 591, 927
SchI GAGTC 2 cut(s) 400, 758
ScrFI CCNGG 4 cut(s) 194, 495, 496, 1018
SduI GDGCHC 1 cut(s) 314
SetI ASST 9 cut(s) 8, 58, 244, 516, 643, 647, 685, 853, 880
SfaNI GCATC 3 cut(s) 181, 516, 532
SfuI TTCGAA 2 cut(s) 362, 729
SmaI CCCGGG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SphI GCATGC 1 cut(s) 90
SsiI CCGC 2 cut(s) 73, 529
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 4 cut(s) 192, 493, 494, 1016
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 3 cut(s) 8, 647, 880
TaqI TCGA 7 cut(s) 213, 362, 443, 594, 708, 729, 789
TfiI GAWTC 2 cut(s) 364, 710
TscAI CASTG 2 cut(s) 724, 821
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 282, 637, 727, 963
TspGWI ACGGA 1 cut(s) 742
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 2 cut(s) 724, 821
Van91I CCANNNNNTGG 1 cut(s) 582
XapI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
XceI RCATGY 1 cut(s) 90
XmaI CCCGGG 1 cut(s) 494
XmnI GAANNNNTTC 2 cut(s) 600, 738
XspI CTAG 1 cut(s) 44
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.