Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012110

Physical Location & Seq

Genomic Coordinates Forward (+)

15341826 .. 15343539

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1158500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGAGTCGTGAGGCAGTACCTGCATGATGGTTGCTTTCCATCCACCGTTCACAAGAACATCAAATCATCCAATATTTTTCTTGACATCGAACTCAATCCCCGTCTTTGCAATTATGGCTTGGCAACATTTCACCAGCGTACTAGCCAAAACCTCGGGATGGGATACAACGCTCCAGAATGCACAAAGTCAACAGCGTTTACAGGAAAGACTGATGTTTACAGGTTTGGAGTAGTCATGTTGGAACTATTGACAGGTAGATTGCCTGTTGACAGTTCAAAACCACCGACGGAGCAGTGCCTTGTACGATGGGCAACTCCCCAGCTTCATGATCTCGATGCATTGTCACAAATGGTGGACCCTGCACTGCGTGGACTCAACCCTCCCAAGTCAATCTCACGGTGTGCTGATATCGTTTGCCCTCTGTGTTCAATTAATTACTACGTAATAGTTACCACACACCCAGAAACACATTCGCATAGAGAAAGGGATCTATATAGTGACTTAGTTGCCTTAAACCCACTGCGGGAGCCAGAATTTTGGCCACCATTGTCGGAGGAGGTGCTACAGTTGGTGCGGTTAGTGCAGAGCTCTACTGCGAACATGAGTGAAGATTTTGGTCTCGGGGCATCTCGTCACTCCAGTGCCATGAGCAGCAGGAGAGAAGATCTGGCATTGTCTATGTTTTTATTCATCTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

6.44

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 97	2.6e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	15 - 93	4e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78980
fragaria_vesca	FvH4_6g36490
malus_domestica	MD09G1168400.v1.1 MD17G1158200.v1.1 MD17G1158500.v1.1
prunus_persica	Prupe.3G026900_v2.0.a1 Prupe.3G026900_v2.0.a1 Prupe.3G026900_v2.0.a1
pyrus_communis	pycom17g15170
rosa_chinensis	RchiOBHm_Chr2g0148621
rosa_laevigata	RLG00000020356
rosa_multiflora	Rmu_sc0000048.1_g000025
rosa_roxburghii	Rroxscaffold_2G00098590
rosa_rugosa	Rorug02G0408200
rosa_samantha	Rh2AG466600 Rh2BG479700 Rh2CG453100 Rh2DG488500
rosa_wichuraiana	Rw2G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AciI	CCGC	2 cut(s)	526, 577
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	536
AdeI	CACNNNGTG	2 cut(s)	371, 404
AfaI	GTAC	3 cut(s)	20, 142, 306
AfiI	CCNNNNNNNGG	2 cut(s)	160, 526
AgsI	TTSAA	2 cut(s)	279, 432
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	2 cut(s)	325, 591
AluI	AGCT	2 cut(s)	325, 591
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	155, 623
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	654
ApoI	RAATTY	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	155, 623
AvaII	GGWCC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	666
BccI	CCATC	4 cut(s)	23, 49, 154, 303
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	1 cut(s)	655
BlsI	GCNGC	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	2 cut(s)	155, 623
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	360, 531
BmsI	GCATC	2 cut(s)	328, 638
BpmI	CTGGAG	2 cut(s)	159, 625
BsaAI	YACGTR	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 526
Bse1I	ACTGG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	41, 68, 165
BseLI	CCNNNNNNNGG	2 cut(s)	160, 526
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	666
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	2 cut(s)	348, 605
BshFI	GGCC	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	593
BsiHKCI	CYCGRG	2 cut(s)	155, 623
BslI	CCNNNNNNNGG	2 cut(s)	160, 526
BsmAI	GTCTC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	2 cut(s)	155, 623
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	3 cut(s)	331, 490, 667
BspACI	CCGC	2 cut(s)	526, 577
BspANI	GGCC	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	360, 531
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	626
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	331, 490, 667
Bst4CI	ACNGT	4 cut(s)	49, 275, 402, 570
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	41, 68, 165
BstKTI	GATC	3 cut(s)	334, 493, 670
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	3 cut(s)	331, 490, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 117, 583
BstSFI	CTRYAG	1 cut(s)	566
BstSNI	TACGTA	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	666
BstX2I	RGATCY	2 cut(s)	490, 667
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstYI	RGATCY	2 cut(s)	490, 667
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	41, 68, 165
BtsI	GCAGTG	3 cut(s)	302, 365, 521
BtsIMutI	CAGTG	4 cut(s)	302, 365, 521, 649
BveI	ACCTGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	22
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	19, 141, 305
CviAII	CATG	5 cut(s)	26, 238, 329, 604, 649
CviJI	RGCY	6 cut(s)	120, 147, 325, 532, 544, 591
CviKI_1	RGCY	6 cut(s)	120, 147, 325, 532, 544, 591
CviQI	GTAC	3 cut(s)	19, 141, 305
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	3 cut(s)	333, 492, 669
DpnII	GATC	3 cut(s)	331, 490, 667
DraIII	CACNNNGTG	2 cut(s)	371, 404
EaeI	YGGCCR	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	591
Eco105I	TACGTA	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	155, 623
EcoICRI	GAGCTC	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	593
FaeI	CATG	5 cut(s)	29, 241, 332, 607, 652
FatI	CATG	5 cut(s)	25, 237, 328, 603, 648
FauI	CCCGC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	655
FokI	GGATG	3 cut(s)	28, 55, 172
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	655
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	1 cut(s)	655
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	2 cut(s)	159, 625
HaeIII	GGCC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	29, 241, 332, 607, 652
HincII	GTYRAC	2 cut(s)	192, 271
HindII	GTYRAC	2 cut(s)	192, 271
HinfI	GANTC	2 cut(s)	6, 375
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	7 cut(s)	52, 192, 201, 220, 271, 358, 374
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	6 cut(s)	10, 83, 157, 176, 329, 335
Hpy8I	GTNNAC	7 cut(s)	52, 192, 201, 220, 271, 358, 374
Hpy99I	CGWCG	1 cut(s)	292
HpyCH4III	ACNGT	4 cut(s)	49, 275, 402, 570
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	25, 111, 183, 341, 365, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 117, 583
HpyF3I	CTNAG	1 cut(s)	505
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	29, 241, 332, 607, 652
Kzo9I	GATC	3 cut(s)	331, 490, 667
LmnI	GCTCC	3 cut(s)	178, 292, 529
Lsp1109I	GCAGC	1 cut(s)	666
LweI	GCATC	2 cut(s)	328, 638
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	345, 451, 500, 635
MalI	GATC	3 cut(s)	333, 492, 669
MboI	GATC	3 cut(s)	331, 490, 667
MboII	GAAGA	2 cut(s)	623, 677
MflI	RGATCY	2 cut(s)	490, 667
MhlI	GDGCHC	1 cut(s)	593
MlsI	TGGCCA	1 cut(s)	544
MluCI	AATT	4 cut(s)	112, 432, 436, 536
MluNI	TGGCCA	1 cut(s)	544
MlyI	GAGTC	2 cut(s)	15, 369
MmeI	TCCRAC	2 cut(s)	222, 534
MnlI	CCTC	6 cut(s)	6, 164, 393, 432, 550, 553
Mox20I	TGGCCA	1 cut(s)	544
Mph1103I	ATGCAT	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	544
MseI	TTAA	2 cut(s)	435, 515
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	22, 117, 583
NdeII	GATC	3 cut(s)	331, 490, 667
NlaIII	CATG	5 cut(s)	29, 241, 332, 607, 652
NlaIV	GGNNCC	2 cut(s)	360, 531
NmuCI	GTSAC	3 cut(s)	345, 500, 635
NsiI	ATGCAT	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	642
PagI	TCATGA	1 cut(s)	328
PctI	GAATGC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	656
PleI	GAGTC	2 cut(s)	14, 369
PpsI	GAGTC	2 cut(s)	14, 369
Ppu21I	YACGTR	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	360, 531
PspPI	GGNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	490, 667
RsaI	GTAC	3 cut(s)	20, 142, 306
RsaNI	GTAC	3 cut(s)	19, 141, 305
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	435, 515
SatI	GCNGC	1 cut(s)	655
Sau3AI	GATC	3 cut(s)	331, 490, 667
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	15, 369
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	8 cut(s)	24, 156, 227, 259, 327, 447, 564, 593
SfaNI	GCATC	2 cut(s)	328, 638
SfcI	CTRYAG	1 cut(s)	566
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	642
SnaBI	TACGTA	1 cut(s)	445
Sse9I	AATT	4 cut(s)	112, 432, 436, 536
SsiI	CCGC	2 cut(s)	526, 577
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	593
TaaI	ACNGT	4 cut(s)	49, 275, 402, 570
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	90, 336
TasI	AATT	4 cut(s)	112, 432, 436, 536
Tru1I	TTAA	2 cut(s)	435, 515
Tru9I	TTAA	2 cut(s)	435, 515
TscAI	CASTG	4 cut(s)	302, 372, 528, 649
TseFI	GTSAC	3 cut(s)	345, 500, 635
TseI	GCWGC	1 cut(s)	654
Tsp45I	GTSAC	3 cut(s)	345, 500, 635
TspDTI	ATGAA	2 cut(s)	317, 682
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	4 cut(s)	302, 372, 528, 649
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	536
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.