Rorug02G0408200

protein STRUBBELIG-RECEPTOR FAMILY 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012110
Physical Location & Seq
Reverse (-)
52031336 .. 52031716
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0408200.1

Sequence Viewer

Length: 381 bp
ATGCTGGGTGGTGGCGCCTGGCCCTTGAGCGGGTTGAATTCCCCAGAACATGCTGAAATTTTGGCATGCAAGGTTGCTTTAGAGTTTGCGGAGGTTCATGGTTTTGGACCCGTTCTTCTAGAGACTGATGCTTTGGAGGTTCAACGTCAACTTTCTTTGCATGACTCTGTCAATTTATCAGGGCTAGGCAGAATATATGATGATGTTGTGGCTCTCTTGGAGGCTCAGAGTGTTATCCAGGTGACTCATGTAGGTAGGAAAGGTAATGGGGTATCACATTTGTTGGCTAACCATGCTTGTTCTATTAGACAGAATGTTTTTTATTTATCAACTCCAGAATTTTTACAAGCTGCAATTGCAGCTGACCTTTGTACTGTGTAA

Protein Analysis

126

Amino Acids

13.42

Weight (kDa)

5.14

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 99 1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78980
fragaria_vesca FvH4_6g36490
malus_domestica MD09G1168400.v1.1 MD17G1158200.v1.1 MD17G1158500.v1.1
prunus_persica Prupe.3G026900_v2.0.a1 Prupe.3G026900_v2.0.a1 Prupe.3G026900_v2.0.a1
pyrus_communis pycom17g15170
rosa_chinensis RchiOBHm_Chr2g0148621
rosa_laevigata RLG00000020356
rosa_multiflora Rmu_sc0000048.1_g000025
rosa_roxburghii Rroxscaffold_2G00098590
rosa_rugosa Rorug02G0408200
rosa_samantha Rh2AG466600 Rh2BG479700 Rh2CG453100 Rh2DG488500
rosa_wichuraiana Rw2G038050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 30
AciI CCGC 2 cut(s) 30, 89
AcsI RAATTY 3 cut(s) 37, 57, 338
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 29, 30
AgsI TTSAA 2 cut(s) 37, 143
AjnI CCWGG 2 cut(s) 17, 237
AluBI AGCT 2 cut(s) 350, 362
AluI AGCT 2 cut(s) 350, 362
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 350, 359
ApoI RAATTY 3 cut(s) 37, 57, 338
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 21, 107
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 337, 371
BciT130I CCWGG 2 cut(s) 19, 239
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 119, 185
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 351, 360
BlsI GCNGC 2 cut(s) 352, 361
Bme1390I CCNGG 2 cut(s) 19, 239
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 21, 107
BmiI GGNNCC 2 cut(s) 16, 109
BmrFI CCNGG 2 cut(s) 19, 239
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 30
BseBI CCWGG 2 cut(s) 19, 239
BseLI CCNNNNNNNGG 2 cut(s) 29, 30
BseMII CTCAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 337, 371
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 29, 30
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 22
BspACI CCGC 2 cut(s) 30, 89
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 16, 109
BspT107I GGYRCC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 19, 239
Bst4CI ACNGT 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 3 cut(s) 293, 356, 359
BstNI CCWGG 2 cut(s) 19, 239
BstNSI RCATGY 2 cut(s) 53, 69
BstSCI CCNGG 2 cut(s) 17, 237
BstV1I GCAGC 2 cut(s) 337, 371
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 21, 107
Csp6I GTAC 1 cut(s) 372
CviAII CATG 6 cut(s) 50, 66, 98, 161, 248, 293
CviJI RGCY 7 cut(s) 22, 184, 212, 224, 287, 350, 362
CviKI_1 RGCY 7 cut(s) 22, 184, 212, 224, 287, 350, 362
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 225
DinI GGCGCC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 17, 237
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
FaeI CATG 6 cut(s) 53, 69, 101, 164, 251, 296
FaiI YATR 8 cut(s) 51, 67, 99, 162, 196, 198, 249, 294
FatI CATG 6 cut(s) 49, 65, 97, 160, 247, 292
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 351, 360
Fsp4HI GCNGC 2 cut(s) 351, 360
FspBI CTAG 2 cut(s) 119, 185
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 351, 360
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 22
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 6 cut(s) 53, 69, 101, 164, 251, 296
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 2 cut(s) 164, 244
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 119, 335
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 69, 160, 353, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 356, 359
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 6 cut(s) 53, 69, 101, 164, 251, 296
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
LpnPI CCDG 7 cut(s) 4, 31, 57, 165, 224, 251, 348
Lsp1109I GCAGC 2 cut(s) 337, 371
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 119, 185
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 241
MbiI CCGCTC 1 cut(s) 30
MboII GAAGA 1 cut(s) 107
MfeI CAATTG 1 cut(s) 354
MluCI AATT 5 cut(s) 37, 57, 172, 338, 354
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 2 cut(s) 158, 238
MnlI CCTC 3 cut(s) 85, 130, 214
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 19, 239
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 2 cut(s) 19, 239
MwoI GCNNNNNNNGC 3 cut(s) 293, 356, 359
NarI GGCGCC 1 cut(s) 15
NlaIII CATG 6 cut(s) 53, 69, 101, 164, 251, 296
NlaIV GGNNCC 2 cut(s) 16, 109
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 2 cut(s) 53, 69
PaeI GCATGC 1 cut(s) 69
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 352, 361
PleI GAGTC 2 cut(s) 158, 238
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 2 cut(s) 158, 238
Psp6I CCWGG 2 cut(s) 17, 237
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 17, 237
PspN4I GGNNCC 2 cut(s) 16, 109
PspPI GGNCC 2 cut(s) 21, 107
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SatI GCNGC 2 cut(s) 351, 360
Sau96I GGNCC 2 cut(s) 21, 107
SchI GAGTC 2 cut(s) 158, 238
ScrFI CCNGG 2 cut(s) 19, 239
SfaNI GCATC 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 16
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 69
Sse9I AATT 5 cut(s) 37, 57, 172, 338, 354
SsiI CCGC 2 cut(s) 30, 89
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 2 cut(s) 119, 185
StyD4I CCNGG 2 cut(s) 17, 237
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 148
TasI AATT 5 cut(s) 37, 57, 172, 338, 354
TatI WGTACW 1 cut(s) 371
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 350, 359
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 86
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 3 cut(s) 37, 57, 338
XbaI TCTAGA 1 cut(s) 118
XceI RCATGY 2 cut(s) 53, 69
XspI CTAG 2 cut(s) 119, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.