MD17G1239300.v1.1

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014988
Physical Location & Seq
Reverse (-)
28860805 .. 28861212
408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1239300.v1.1.491

Sequence Viewer

Length: 336 bp
ATGCACTTGGGGTTTTGCGCGGCAACTGGAGCATTGGCTCAGAGCCATAGGATACTGGCTTGGAGCTTTAGCAATTCTAATTTTTCCATCGGCGACGCTTTGGTGACTCAGAATTTACCTTCCTTGGTGGTGTCGGAGAAAAGTCTATTTTCGGATCAAAAGGGTTCGTCATGGGGGAGGAAGGAGAGGAAAGGAGAGGAGGATGTAGAGAAAGTTGAAGACTGGGAATTGGAGTACTGGCCTTACCTGATAGATTACAAAGAGATACATGCCGCGAAAAGAGGGATTTCCCGAGAAGAAAGTGATCGGGAATGGAGGACATGGGAAAATGTATAA

Protein Analysis

112

Amino Acids

12.84

Weight (kDa)

5.19

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28350
fragaria_vesca FvH4_6g26300
malus_domestica MD09G1246400.v1.1 MD17G1239200.v1.1 MD17G1239300.v1.1
prunus_persica Prupe.3G131900_v2.0.a1
pyrus_communis pycom09g16380
rosa_chinensis RchiOBHm_Chr2g0126741
rosa_laevigata RLG00000018918
rosa_roxburghii Rroxscaffold_2G00117000
rosa_rugosa Rorug02G0264500
rosa_samantha Rh2AG321600 Rh2BG329700 Rh2CG309400 Rh2DG349000
rosa_wichuraiana Rw2G026060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 275
AciI CCGC 2 cut(s) 20, 273
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 225
BccI CCATC 1 cut(s) 95
BciVI GTATCC 1 cut(s) 45
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 2 cut(s) 21, 273
BlsI GCNGC 2 cut(s) 22, 274
BmcAI AGTACT 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 4 cut(s) 31, 60, 227, 242
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 53, 122
BseNI ACTGG 4 cut(s) 31, 60, 227, 242
BseRI GAGGAG 1 cut(s) 212
Bsh1236I CGCG 2 cut(s) 20, 275
BshFI GGCC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 291
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 291
Bsp143I GATC 2 cut(s) 154, 304
BspACI CCGC 2 cut(s) 20, 273
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 52, 121
BspFNI CGCG 2 cut(s) 20, 275
BspPI GGATC 1 cut(s) 162
BsrI ACTGG 4 cut(s) 31, 60, 227, 242
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 154, 304
BssT1I CCWWGG 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 39, 108
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 20, 275
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 157, 307
BstMBI GATC 2 cut(s) 154, 304
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 272
BstUI CGCG 2 cut(s) 20, 275
BstV2I GAAGAC 1 cut(s) 225
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 208
CfoI GCGC 1 cut(s) 20
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 171, 269, 321
CviJI RGCY 5 cut(s) 38, 45, 59, 66, 241
CviKI_1 RGCY 5 cut(s) 38, 45, 59, 66, 241
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 39, 108
DpnI GATC 2 cut(s) 156, 306
DpnII GATC 2 cut(s) 154, 304
Eco130I CCWWGG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 174, 272, 324
FaiI YATR 5 cut(s) 48, 172, 270, 322, 334
FatI CATG 3 cut(s) 170, 268, 320
Fnu4HI GCNGC 2 cut(s) 21, 273
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 21, 273
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 21, 273
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 241
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 174, 272, 324
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 42, 111, 136, 154
Hpy188III TCNNGA 2 cut(s) 291, 308
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 129, 175
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 39, 108
Hsp92II CATG 3 cut(s) 174, 272, 324
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 154, 304
LmnI GCTCC 2 cut(s) 29, 63
LpnPI CCDG 5 cut(s) 12, 41, 208, 223, 260
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 156, 306
MboI GATC 2 cut(s) 154, 304
MboII GAAGA 2 cut(s) 230, 308
MluCI AATT 4 cut(s) 73, 79, 112, 227
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 171, 180, 190, 193, 275, 309
MvnI CGCG 2 cut(s) 20, 275
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 154, 304
NlaIII CATG 3 cut(s) 174, 272, 324
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 272
PkrI GCNGC 2 cut(s) 22, 274
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 2 cut(s) 21, 273
Sau3AI GATC 2 cut(s) 154, 304
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 100
SetI ASST 3 cut(s) 68, 121, 249
Sse9I AATT 4 cut(s) 73, 79, 112, 227
SsiI CCGC 2 cut(s) 20, 273
StyI CCWWGG 1 cut(s) 123
TasI AATT 4 cut(s) 73, 79, 112, 227
TatI WGTACW 1 cut(s) 234
TauI GCSGC 2 cut(s) 23, 275
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.