Rorug02G0264500

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014988
Physical Location & Seq
Reverse (-)
27912048 .. 27913215
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0264500.1

Sequence Viewer

Length: 285 bp
ATGGAGAAGAGCAAATCATTTTCTGGGTACTACTCAACTGCATATACAGAGGCGAGGTTCGGGTTTGAGGATCGACCGAAATCTTACAGCTTCAATGGTCCGGTGAGCAAGGTAGAAGGGCCATCTTCAGCATCAGGGTCTGGTAATAGTAATCCAGAGCTGGAGAGAAGGAAGAGGGTGGCAAACTATAACATGTATACCATGGAAGGTAAGTTCAAGTCGTCGCTGCGCAACAGTTTCAAATGGATCAAAGGCAAGTTTGTTGACAACTTCTATGACGAGTAG

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

9.49

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 50 - 91 3.2e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28350
fragaria_vesca FvH4_6g26300
malus_domestica MD09G1246400.v1.1 MD17G1239200.v1.1 MD17G1239300.v1.1
prunus_persica Prupe.3G131900_v2.0.a1
pyrus_communis pycom09g16380
rosa_chinensis RchiOBHm_Chr2g0126741
rosa_laevigata RLG00000018918
rosa_roxburghii Rroxscaffold_2G00117000
rosa_rugosa Rorug02G0264500
rosa_samantha Rh2AG321600 Rh2BG329700 Rh2CG309400 Rh2DG349000
rosa_wichuraiana Rw2G026060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
AccI GTMKAC 1 cut(s) 197
AclWI GGATC 2 cut(s) 78, 254
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 94, 217, 241
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 90, 160
AluI AGCT 2 cut(s) 90, 160
AlwI GGATC 2 cut(s) 78, 254
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 98, 119
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 130
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 119
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 101
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 70, 246
Bsp19I CCATGG 1 cut(s) 201
BspANI GGCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 78, 254
BspQI GCTCTTC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 70, 246
BssNAI GTATAC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 2, 167
BstDSI CCRYGG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 73, 249
BstMBI GATC 2 cut(s) 70, 246
BstMCI CGRYCG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 98, 119
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 193, 202
CviJI RGCY 3 cut(s) 90, 121, 160
CviKI_1 RGCY 3 cut(s) 90, 121, 160
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 72, 248
DpnII GATC 2 cut(s) 70, 246
Eam1104I CTCTTC 2 cut(s) 2, 167
EarI CTCTTC 2 cut(s) 2, 167
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 196, 205
FaiI YATR 7 cut(s) 43, 45, 189, 194, 198, 203, 276
FatI CATG 2 cut(s) 192, 201
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 196, 205
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 198, 265
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 198, 265
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 110, 162, 200
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 196, 205
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 70, 246
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 6 cut(s) 9, 114, 120, 126, 146, 168
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 72, 248
MboI GATC 2 cut(s) 70, 246
MboII GAAGA 3 cut(s) 19, 117, 184
MnlI CCTC 4 cut(s) 43, 48, 61, 168
MspI CCGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 70, 246
NlaIII CATG 2 cut(s) 196, 205
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 2
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 192
PspPI GGNCC 2 cut(s) 98, 119
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 70, 246
Sau96I GGNCC 2 cut(s) 98, 119
SetI ASST 5 cut(s) 59, 92, 114, 162, 211
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 98
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 91
TseI GCWGC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.