MD17G1239400.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
28865163 .. 28868660
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1239400.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGGGTTTAATATGTACCAAGCCGTCGGCAGTCGAAGATAGCCGGGAAAGCCCACCAAAAAGGACATCTTCGATTTCGAGACGGCACCACTCCGAGCTTAAGGTTTCACGGTTCGGTTCTTCGAAAAGAGAGGATCCAGTTTGGATTAAAGACAGATTGGGTGGTGGTGGGGATGTGAAAGTTATGTTGGTGGATAAGAAAGTCAATGGTTCAATGCGATCATATGATCAGACTAAGAGTAAGAAGATAGACAAGGCTGAGGCTACTTTTCTTGACCATCTGGGTTCGAGAAGAATTCCCAACGCTACGGTGGCCGAGCAAACAGCGGCAGGTTGGCCACGTTGGCTCGCTGCAGCAGCCCCTGAAGCTATCAATGGATGGATACCACGACGCGCTGACACGTTCGAGAAGTTAAATAAAATCGGCCAAGGAACTTATAGTAGTGTTTACAAGGCTCGCGATGTCACGAATGATAAATTTGTTGCTTTGAAAAAAGTCAGATTTGATAATCTCGATTCCGAGAGTGTCAAGTTTATGGCAAGGGAGATCCTTTTCTTGCGCAGGCTTGATCATCCCAATATAATAAAGTTGCATGGATTGATCACAGCACGGTCATCTAGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGGCTTGTATCACGCCCAGGCATTAAGTTCTCCGAACCTCAGGTGAAATGTTACATGCAGCAACTTTTAAGTGGTCTTGATCACTGTCATAGCCATGGTATTTTGCATCGTGACATAAAGGGGTCAAATCTTCTTCTTGACAACAATGGCATCTTGAAAATTGCCGACTTTGGCTTGGCAAGCAATTATGATCCTCGTCACAATGTTCCATTGACAAGCCGCGTTGTGACTCTTTGGTATCGGCCTCCAGAACTTTTACTTGGAGCCTCTAAATATGGTGTTGCTGTGGATTTATGGAGCACTGGTTGCATACTAGGAGAATTGTATTCTGGAAAGCCTATCCTGCCAGGAAAAACAGAGGTTGAACAGTTGCATAAGATTTTCAAGCTCTGTGGTTCACCATCTGAGGATTATTGGCGTAAATTGCACTTACGAAATTCAACAATGATCAAGCCTCCTCAACCTTATAGAAGATGCGTGGCAGAGACTTTTAAGGACCTTCCTGCTTCAGCTCTGCAGCTTATGGAAATTTTACTTTCTCTTTACCCTGCTGATCGAGGAACTGCTGCAATTGCTCTCAAGAATGAGTTTTTCACCACAAAGCCTTTTCCTTGTGATCCTTCAAGTTTGCCCAAGTACCCACCCAGCAAAGAGATTGATGCCAAATTGCGAGAAGAAGAAGCTAGAAGGCAAGGAGCCAGTGGAGGAAGGGGTCAGAAGGTAGACCTGGGCAGGAGAGCACAACTGTAG

Protein Analysis

471

Amino Acids

52.72

Weight (kDa)

9.58

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 135 - 419 3.6e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 137 - 348 2.4e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 1386
AccII CGCG 3 cut(s) 393, 459, 885
AciI CCGC 2 cut(s) 326, 883
AclWI GGATC 5 cut(s) 128, 141, 541, 848, 1274
AcoI YGGCCR 3 cut(s) 312, 335, 424
AcsI RAATTY 4 cut(s) 294, 476, 1099, 1191
AcuI CTGAAG 2 cut(s) 384, 1155
AfaI GTAC 3 cut(s) 16, 629, 1301
AflII CTTAAG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 7 cut(s) 213, 490, 820, 1028, 1048, 1104, 1287
AjnI CCWGG 3 cut(s) 679, 1009, 1389
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 906, 938
AluBI AGCT 7 cut(s) 97, 368, 624, 1051, 1175, 1183, 1346
AluI AGCT 7 cut(s) 97, 368, 624, 1051, 1175, 1183, 1346
Alw21I GWGCWC 2 cut(s) 965, 1405
Alw26I GTCTC 2 cut(s) 73, 1142
AlwI GGATC 5 cut(s) 128, 141, 541, 848, 1274
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 4 cut(s) 312, 335, 424, 905
ApeKI GCWGC 7 cut(s) 350, 353, 356, 621, 721, 1180, 1229
ApoI RAATTY 4 cut(s) 294, 476, 1099, 1191
AspLEI GCGC 2 cut(s) 395, 561
AspS9I GGNCC 1 cut(s) 1159
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 718, 1053, 1249
AsuII TTCGAA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 1159
AxyI CCTNAGG 1 cut(s) 702
BalI TGGCCA 1 cut(s) 337
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 965, 1405
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 7 cut(s) 337, 365, 368, 633, 733, 1192, 1216
BccI CCATC 3 cut(s) 285, 372, 1072
BceAI ACGGC 2 cut(s) 7, 98
BciT130I CCWGG 3 cut(s) 681, 1011, 1391
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 5 cut(s) 226, 568, 600, 742, 1110
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 73, 1142
BfaI CTAG 3 cut(s) 618, 977, 1347
BfmI CTRYAG 3 cut(s) 351, 1178, 1409
BfrI CTTAAG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 343
BisI GCNGC 9 cut(s) 327, 351, 354, 357, 622, 722, 883, 1181, 1230
BlsI GCNGC 9 cut(s) 328, 352, 355, 358, 623, 723, 884, 1182, 1231
Bme1390I CCNGG 4 cut(s) 44, 681, 1011, 1391
Bme18I GGWCC 1 cut(s) 1159
BmgT120I GGNCC 1 cut(s) 1159
BmiI GGNNCC 4 cut(s) 86, 135, 928, 1360
BmrFI CCNGG 4 cut(s) 44, 681, 1011, 1391
BmsI GCATC 4 cut(s) 778, 822, 1127, 1312
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 427, 679, 757, 1390
BsaXI ACNNNNNCTCC 2 cut(s) 952, 982
Bse1I ACTGG 3 cut(s) 137, 970, 1362
Bse21I CCTNAGG 1 cut(s) 702
BseBI CCWGG 3 cut(s) 681, 1011, 1391
BseDI CCNNGG 4 cut(s) 427, 679, 757, 1390
BseGI GGATG 3 cut(s) 178, 383, 571
BseMII CTCAG 3 cut(s) 249, 716, 1059
BseNI ACTGG 3 cut(s) 137, 970, 1362
BseRI GAGGAG 1 cut(s) 1110
BseXI GCAGC 7 cut(s) 337, 365, 368, 633, 733, 1192, 1216
BseYI CCCAGC 1 cut(s) 1307
Bsh1236I CGCG 3 cut(s) 393, 459, 885
BshFI GGCC 4 cut(s) 314, 337, 426, 907
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 965, 1405
BsiSI CCGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 73, 1142
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 4 cut(s) 314, 337, 426, 907
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 965, 1405
Bsp19I CCATGG 1 cut(s) 757
Bsp68I TCGCGA 1 cut(s) 459
BspACI CCGC 2 cut(s) 326, 883
BspANI GGCC 4 cut(s) 314, 337, 426, 907
BspCNI CTCAG 3 cut(s) 250, 715, 1060
BspFNI CGCG 3 cut(s) 393, 459, 885
BspLI GGNNCC 4 cut(s) 86, 135, 928, 1360
BspMAI CTGCAG 2 cut(s) 355, 1182
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 5 cut(s) 128, 141, 541, 848, 1274
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 98
BsrI ACTGG 3 cut(s) 137, 970, 1362
BssECI CCNNGG 4 cut(s) 427, 679, 757, 1390
BssT1I CCWWGG 2 cut(s) 427, 757
Bst2UI CCWGG 3 cut(s) 681, 1011, 1391
Bst4CI ACNGT 6 cut(s) 111, 310, 612, 749, 1032, 1410
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 969
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 4 cut(s) 348, 457, 563, 844
BstDEI CTNAG 4 cut(s) 234, 258, 702, 1068
BstDSI CCRYGG 1 cut(s) 757
BstF5I GGATG 3 cut(s) 178, 383, 571
BstFNI CGCG 3 cut(s) 393, 459, 885
BstHHI GCGC 2 cut(s) 395, 561
BstMAI GTCTC 2 cut(s) 73, 1142
BstNI CCWGG 3 cut(s) 681, 1011, 1391
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 4 cut(s) 42, 679, 1009, 1389
BstSFI CTRYAG 3 cut(s) 351, 1178, 1409
BstUI CGCG 3 cut(s) 393, 459, 885
BstV1I GCAGC 7 cut(s) 337, 365, 368, 633, 733, 1192, 1216
BstX2I RGATCY 2 cut(s) 133, 546
BstYI RGATCY 2 cut(s) 133, 546
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 4 cut(s) 314, 337, 426, 907
BtgI CCRYGG 1 cut(s) 757
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 3 cut(s) 178, 383, 571
BtsIMutI CAGTG 3 cut(s) 745, 963, 1369
BtuMI TCGCGA 1 cut(s) 459
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 4 cut(s) 348, 457, 563, 844
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 2 cut(s) 395, 561
Cfr13I GGNCC 1 cut(s) 1159
CseI GACGC 1 cut(s) 399
Csp6I GTAC 3 cut(s) 15, 628, 1300
CspCI CAANNNNNGTGG 2 cut(s) 1036, 1071
CviAII CATG 4 cut(s) 593, 653, 718, 758
CviQI GTAC 3 cut(s) 15, 628, 1300
DdeI CTNAG 4 cut(s) 234, 258, 702, 1068
EaeI YGGCCR 3 cut(s) 312, 335, 424
Eco130I CCWWGG 2 cut(s) 427, 757
Eco47I GGWCC 1 cut(s) 1159
Eco57I CTGAAG 2 cut(s) 384, 1155
Eco81I CCTNAGG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 1159
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 679, 1009, 1389
EcoT14I CCWWGG 2 cut(s) 427, 757
ErhI CCWWGG 2 cut(s) 427, 757
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 4 cut(s) 596, 656, 721, 761
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 4 cut(s) 592, 652, 717, 757
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 5 cut(s) 226, 568, 600, 742, 1110
FblI GTMKAC 1 cut(s) 1386
Fnu4HI GCNGC 9 cut(s) 327, 351, 354, 357, 622, 722, 883, 1181, 1230
FokI GGATG 3 cut(s) 185, 390, 558
Fsp4HI GCNGC 9 cut(s) 327, 351, 354, 357, 622, 722, 883, 1181, 1230
FspBI CTAG 3 cut(s) 618, 977, 1347
FspI TGCGCA 1 cut(s) 560
GlaI GCGC 2 cut(s) 394, 560
GluI GCNGC 9 cut(s) 327, 351, 354, 357, 622, 722, 883, 1181, 1230
GsaI CCCAGC 1 cut(s) 1311
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 4 cut(s) 314, 337, 426, 907
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 399
HhaI GCGC 2 cut(s) 395, 561
Hin1II CATG 4 cut(s) 596, 656, 721, 761
Hin6I GCGC 2 cut(s) 393, 559
HinP1I GCGC 2 cut(s) 393, 559
HinfI GANTC 2 cut(s) 515, 892
HpaII CCGG 1 cut(s) 43
HphI GGTGA 3 cut(s) 718, 1053, 1249
Hpy166II GTNNAC 3 cut(s) 448, 1061, 1387
Hpy188I TCNGA 7 cut(s) 94, 231, 500, 520, 697, 1069, 1380
Hpy8I GTNNAC 3 cut(s) 448, 1061, 1387
Hpy99I CGWCG 2 cut(s) 28, 393
HpyAV CCTTC 5 cut(s) 1172, 1293, 1344, 1365, 1375
HpyCH4III ACNGT 6 cut(s) 111, 310, 612, 749, 1032, 1410
HpyCH4IV ACGT 2 cut(s) 340, 401
HpyCH4V TGCA 9 cut(s) 353, 592, 721, 769, 972, 1036, 1090, 1180, 1232
HpyF3I CTNAG 4 cut(s) 234, 258, 702, 1068
HpySE526I ACGT 2 cut(s) 340, 401
Hsp92II CATG 4 cut(s) 596, 656, 721, 761
HspAI GCGC 2 cut(s) 393, 559
Ksp22I TGATCA 5 cut(s) 226, 568, 600, 742, 1110
LmnI GCTCC 3 cut(s) 926, 960, 1358
Lsp1109I GCAGC 7 cut(s) 337, 365, 368, 633, 733, 1192, 1216
LweI GCATC 4 cut(s) 778, 822, 1127, 1312
MaeI CTAG 3 cut(s) 618, 977, 1347
MaeII ACGT 2 cut(s) 340, 401
MaeIII GTNAC 5 cut(s) 463, 713, 773, 860, 889
MfeI CAATTG 1 cut(s) 1233
MflI RGATCY 2 cut(s) 133, 546
MhlI GDGCHC 2 cut(s) 965, 1405
MlsI TGGCCA 1 cut(s) 337
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 1 cut(s) 886
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 7 cut(s) 8, 99, 147, 413, 687, 731, 1155
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 326
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 4 cut(s) 44, 681, 1011, 1391
MunI CAATTG 1 cut(s) 1233
MvaI CCWGG 3 cut(s) 681, 1011, 1391
MvnI CGCG 3 cut(s) 393, 459, 885
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 757
NdeI CATATG 1 cut(s) 223
NlaIII CATG 4 cut(s) 596, 656, 721, 761
NlaIV GGNNCC 4 cut(s) 86, 135, 928, 1360
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 4 cut(s) 463, 773, 860, 889
NruI TCGCGA 1 cut(s) 459
NsbI TGCGCA 1 cut(s) 560
NspI RCATGY 1 cut(s) 721
NspV TTCGAA 1 cut(s) 122
PfeI GAWTC 1 cut(s) 515
PkrI GCNGC 9 cut(s) 328, 352, 355, 358, 623, 723, 884, 1182, 1231
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 1159
Psp5II RGGWCCY 1 cut(s) 1159
Psp6I CCWGG 3 cut(s) 679, 1009, 1389
PspFI CCCAGC 1 cut(s) 1307
PspGI CCWGG 3 cut(s) 679, 1009, 1389
PspN4I GGNNCC 4 cut(s) 86, 135, 928, 1360
PspPI GGNCC 1 cut(s) 1159
PspPPI RGGWCCY 1 cut(s) 1159
PstI CTGCAG 2 cut(s) 355, 1182
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 133, 546
RruI TCGCGA 1 cut(s) 459
RsaI GTAC 3 cut(s) 16, 629, 1301
RsaNI GTAC 3 cut(s) 15, 628, 1300
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 7 cut(s) 8, 99, 147, 413, 687, 731, 1155
SatI GCNGC 9 cut(s) 327, 351, 354, 357, 622, 722, 883, 1181, 1230
Sau96I GGNCC 1 cut(s) 1159
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 4 cut(s) 44, 681, 1011, 1391
SduI GDGCHC 2 cut(s) 965, 1405
SfaNI GCATC 4 cut(s) 778, 822, 1127, 1312
SfcI CTRYAG 3 cut(s) 351, 1178, 1409
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 1 cut(s) 1159
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 98, 1241
SmoI CTYRAG 2 cut(s) 98, 1241
SsiI CCGC 2 cut(s) 326, 883
SspMI CTAG 3 cut(s) 618, 977, 1347
StyD4I CCNGG 4 cut(s) 42, 679, 1009, 1389
StyI CCWWGG 2 cut(s) 427, 757
TaaI ACNGT 6 cut(s) 111, 310, 612, 749, 1032, 1410
TaiI ACGT 2 cut(s) 343, 404
TaqI TCGA 8 cut(s) 33, 71, 77, 122, 287, 405, 513, 1219
TauI GCSGC 2 cut(s) 329, 885
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 7 cut(s) 8, 99, 147, 413, 687, 731, 1155
Tru9I TTAA 7 cut(s) 8, 99, 147, 413, 687, 731, 1155
TscAI CASTG 3 cut(s) 752, 970, 1369
TseFI GTSAC 4 cut(s) 463, 773, 860, 889
TseI GCWGC 7 cut(s) 350, 353, 356, 621, 721, 1180, 1229
Tsp45I GTSAC 4 cut(s) 463, 773, 860, 889
TspRI CASTG 3 cut(s) 752, 970, 1369
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 1159
XapI RAATTY 4 cut(s) 294, 476, 1099, 1191
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 1386
XspI CTAG 3 cut(s) 618, 977, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.