Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005567

Physical Location & Seq

Genomic Coordinates Reverse (-)

22621356 .. 22623544

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTTAATATGTACCAAGCCGTCGGCAGTCGAAGATAGCCGGGAAACCCCACCAAAAAGGACATCTTCGATTTCGAGCAGGCACCACTCCGAGCTTAAGGTTTCGCGGTTCGGTTCTTCGAAAAGAGAGGATCCAGTTTGGATTAAAGATAGATTGGGTGGTGGTGGGGATGTGAAAGTTATGTTGGTGGATAAGAAAGTCAATGGTTCAATGCGATCATATGATCAGACTAAGAGTAAGAAGATAGACAGGGCTGAGGCTACTTTTCTTGATCATCTGGGTTCGGGAAGAATTCCCAACGCTACGGTGGCCGAGCAAACAGCGGCAGGATGGCCAGGTTGGCTCGCTGCGGCAGCTCCTGAAGCTATCAATGGATGGATACCACGACGCGCTGGCACGTTCGAGAAGTTAAATAAAATCGGCCAAGGAACTTATAGTAGTGTTTACAAGGCTCGCGATGTCACGAATGATAAATTTGTTGCTTTGAAAAAAGTCAGGTTTGATAATCTCGATTCTGAGAGTGTCAAGTTTATGGCAAGGGAGATCCTTTTCTTGCGCAGGCTTGATCATCCCAATATAATAAAGTTGCATGGATTGATCACAGCACGGTCATCTAGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGGCTTGTATCACGCCCAGGCACTAAGTTCTCCGAACCTCAGGTGAAATGTTACATGCAGCAACTTTTAAGTGGTCTTAATCATTGTCATAGCCATGGTATTTTGCATCGTGACATAAAGGGGTCAAATCTTCTTCTTGACAACAATGGCATCTTGAAAATTGCCGACTTTGGCTTGGCAAGCAACTATCGATCCTCGTCACAATGTTCCATTGACAAGCCGCGTTGTGACTCTTTGGTATCGGCCTCCAGAACTTTTACTTGGAGCCTCGAAGTATGGTGTTGCTGTGGATTTATGGAGCACTGGTTGCATACTAGGAGAATTGTATTCTGGAAAGCCTATCCTGCCAGGAAAAACAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

343

Amino Acids

38.45

Weight (kDa)

9.64

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03740 AT1G03740 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290
fragaria_vesca	FvH4_6g26290 FvH4_6g26290 FvH4_6g26290 FvH4_6g26290
malus_domestica	MD09G1246500.v1.1 MD17G1239400.v1.1
prunus_persica	Prupe.3G132000_v2.0.a1
pyrus_communis	pycom09g16390 pycom17g24290
rosa_chinensis	RchiOBHm_Chr2g0126731
rosa_laevigata	RLG00000018917
rosa_multiflora	Rmu_sc0000007.1_g000004
rosa_rugosa	Rorug02G0264300 Rorug02G0264400
rosa_samantha	Rh2AG321500 Rh2BG329600 Rh2CG309300 Rh2DG348900
rosa_wichuraiana	Rw2G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	4 cut(s)	109, 393, 459, 886
AciI	CCGC	4 cut(s)	109, 326, 353, 884
AclWI	GGATC	4 cut(s)	128, 141, 541, 849
AcoI	YGGCCR	3 cut(s)	312, 335, 424
AcsI	RAATTY	2 cut(s)	294, 476
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	16, 629
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	213, 490, 820
AjnI	CCWGG	3 cut(s)	337, 679, 1010
AjuI	GAANNNNNNNTTGG	4 cut(s)	170, 202, 907, 939
AluBI	AGCT	4 cut(s)	97, 359, 368, 624
AluI	AGCT	4 cut(s)	97, 359, 368, 624
Alw21I	GWGCWC	1 cut(s)	966
AlwI	GGATC	4 cut(s)	128, 141, 541, 849
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	4 cut(s)	312, 335, 424, 906
ApeKI	GCWGC	4 cut(s)	350, 356, 621, 721
ApoI	RAATTY	2 cut(s)	294, 476
AspLEI	GCGC	2 cut(s)	395, 561
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	718
AsuII	TTCGAA	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	702
BalI	TGGCCA	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	966
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	337, 368, 633, 733
BccI	CCATC	2 cut(s)	327, 372
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	3 cut(s)	339, 681, 1012
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	4 cut(s)	226, 274, 568, 600
BcnI	CCSGG	1 cut(s)	44
BfaI	CTAG	2 cut(s)	618, 978
BfrI	CTTAAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	7 cut(s)	327, 351, 354, 357, 622, 722, 884
BlsI	GCNGC	7 cut(s)	328, 352, 355, 358, 623, 723, 885
Bme1390I	CCNGG	4 cut(s)	44, 339, 681, 1012
BmiI	GGNNCC	3 cut(s)	86, 135, 929
BmrFI	CCNGG	4 cut(s)	44, 339, 681, 1012
BmsI	GCATC	2 cut(s)	778, 822
BpmI	CTGGAG	1 cut(s)	895
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	853
BsaJI	CCNNGG	3 cut(s)	427, 679, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bse1I	ACTGG	2 cut(s)	137, 971
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	339, 681, 1012
BseCI	ATCGAT	1 cut(s)	853
BseDI	CCNNGG	3 cut(s)	427, 679, 757
BseGI	GGATG	4 cut(s)	178, 338, 383, 571
BseMII	CTCAG	3 cut(s)	249, 510, 716
BseNI	ACTGG	2 cut(s)	137, 971
BseXI	GCAGC	4 cut(s)	337, 368, 633, 733
Bsh1236I	CGCG	4 cut(s)	109, 393, 459, 886
BshFI	GGCC	4 cut(s)	314, 337, 426, 908
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	966
BsiSI	CCGG	1 cut(s)	43
BsnI	GGCC	4 cut(s)	314, 337, 426, 908
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp143I	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
Bsp19I	CCATGG	1 cut(s)	757
Bsp68I	TCGCGA	1 cut(s)	459
BspACI	CCGC	4 cut(s)	109, 326, 353, 884
BspANI	GGCC	4 cut(s)	314, 337, 426, 908
BspCNI	CTCAG	3 cut(s)	250, 511, 715
BspDI	ATCGAT	1 cut(s)	853
BspFNI	CGCG	4 cut(s)	109, 393, 459, 886
BspLI	GGNNCC	3 cut(s)	86, 135, 929
BspPI	GGATC	4 cut(s)	128, 141, 541, 849
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	137, 971
BssECI	CCNNGG	3 cut(s)	427, 679, 757
BssMI	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
BssT1I	CCWWGG	2 cut(s)	427, 757
Bst2UI	CCWGG	3 cut(s)	339, 681, 1012
Bst4CI	ACNGT	2 cut(s)	310, 612
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	6 cut(s)	83, 348, 397, 457, 563, 844
BstDEI	CTNAG	5 cut(s)	234, 258, 519, 687, 702
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	4 cut(s)	178, 338, 383, 571
BstFNI	CGCG	4 cut(s)	109, 393, 459, 886
BstHHI	GCGC	2 cut(s)	395, 561
BstKTI	GATC	9 cut(s)	136, 221, 229, 277, 549, 571, 603, 658, 857
BstMBI	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 343, 356, 365, 843, 970, 1007
BstNI	CCWGG	3 cut(s)	339, 681, 1012
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	4 cut(s)	42, 337, 679, 1010
BstUI	CGCG	4 cut(s)	109, 393, 459, 886
BstV1I	GCAGC	4 cut(s)	337, 368, 633, 733
BstX2I	RGATCY	2 cut(s)	133, 546
BstYI	RGATCY	2 cut(s)	133, 546
Bsu15I	ATCGAT	1 cut(s)	853
Bsu36I	CCTNAGG	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	314, 337, 426, 908
BsuTUI	ATCGAT	1 cut(s)	853
BtgI	CCRYGG	1 cut(s)	757
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	178, 338, 383, 571
BtsIMutI	CAGTG	1 cut(s)	964
BtuMI	TCGCGA	1 cut(s)	459
Cac8I	GCNNGC	6 cut(s)	83, 348, 397, 457, 563, 844
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	395, 561
ClaI	ATCGAT	1 cut(s)	853
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	15, 628
CviAII	CATG	4 cut(s)	593, 653, 718, 758
CviQI	GTAC	2 cut(s)	15, 628
DdeI	CTNAG	5 cut(s)	234, 258, 519, 687, 702
DpnI	GATC	9 cut(s)	135, 220, 228, 276, 548, 570, 602, 657, 856
DpnII	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
EaeI	YGGCCR	3 cut(s)	312, 335, 424
Eco130I	CCWWGG	2 cut(s)	427, 757
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	3 cut(s)	337, 679, 1010
EcoT14I	CCWWGG	2 cut(s)	427, 757
ErhI	CCWWGG	2 cut(s)	427, 757
FaeI	CATG	4 cut(s)	596, 656, 721, 761
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	4 cut(s)	592, 652, 717, 757
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	4 cut(s)	226, 274, 568, 600
Fnu4HI	GCNGC	7 cut(s)	327, 351, 354, 357, 622, 722, 884
FokI	GGATG	4 cut(s)	185, 345, 390, 558
Fsp4HI	GCNGC	7 cut(s)	327, 351, 354, 357, 622, 722, 884
FspBI	CTAG	2 cut(s)	618, 978
FspI	TGCGCA	1 cut(s)	560
GlaI	GCGC	2 cut(s)	394, 560
GluI	GCNGC	7 cut(s)	327, 351, 354, 357, 622, 722, 884
GsuI	CTGGAG	1 cut(s)	895
HaeIII	GGCC	4 cut(s)	314, 337, 426, 908
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	2 cut(s)	395, 561
Hin1II	CATG	4 cut(s)	596, 656, 721, 761
Hin6I	GCGC	2 cut(s)	393, 559
HinP1I	GCGC	2 cut(s)	393, 559
HinfI	GANTC	2 cut(s)	515, 893
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	4 cut(s)	94, 231, 520, 697
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	2 cut(s)	28, 393
HpyCH4III	ACNGT	2 cut(s)	310, 612
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	592, 721, 769, 973
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 343, 356, 365, 843, 970, 1007
HpyF3I	CTNAG	5 cut(s)	234, 258, 519, 687, 702
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	596, 656, 721, 761
HspAI	GCGC	2 cut(s)	393, 559
Ksp22I	TGATCA	4 cut(s)	226, 274, 568, 600
Kzo9I	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
LmnI	GCTCC	3 cut(s)	364, 927, 961
Lsp1109I	GCAGC	4 cut(s)	337, 368, 633, 733
LweI	GCATC	2 cut(s)	778, 822
MaeI	CTAG	2 cut(s)	618, 978
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	5 cut(s)	463, 713, 773, 861, 890
MalI	GATC	9 cut(s)	135, 220, 228, 276, 548, 570, 602, 657, 856
MboI	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
MboII	GAAGA	7 cut(s)	47, 60, 111, 256, 303, 785, 788
MflI	RGATCY	2 cut(s)	133, 546
MhlI	GDGCHC	1 cut(s)	966
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	4 cut(s)	294, 476, 822, 984
MluNI	TGGCCA	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	887
MnlI	CCTC	7 cut(s)	124, 253, 711, 868, 919, 941, 1016
Mox20I	TGGCCA	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	6 cut(s)	8, 99, 147, 413, 731, 741
MslI	CAYNNNNRTG	1 cut(s)	756
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	326
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	4 cut(s)	44, 339, 681, 1012
MvaI	CCWGG	3 cut(s)	339, 681, 1012
MvnI	CGCG	4 cut(s)	109, 393, 459, 886
MwoI	GCNNNNNNNGC	7 cut(s)	311, 343, 356, 365, 843, 970, 1007
NciI	CCSGG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	757
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
NlaIII	CATG	4 cut(s)	596, 656, 721, 761
NlaIV	GGNNCC	3 cut(s)	86, 135, 929
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	4 cut(s)	463, 773, 861, 890
NruI	TCGCGA	1 cut(s)	459
NsbI	TGCGCA	1 cut(s)	560
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	7 cut(s)	328, 352, 355, 358, 623, 723, 885
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
Psp6I	CCWGG	3 cut(s)	337, 679, 1010
PspGI	CCWGG	3 cut(s)	337, 679, 1010
PspN4I	GGNNCC	3 cut(s)	86, 135, 929
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	133, 546
RruI	TCGCGA	1 cut(s)	459
RsaI	GTAC	2 cut(s)	16, 629
RsaNI	GTAC	2 cut(s)	15, 628
RseI	CAYNNNNRTG	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	8, 99, 147, 413, 731, 741
SatI	GCNGC	7 cut(s)	327, 351, 354, 357, 622, 722, 884
Sau3AI	GATC	9 cut(s)	133, 218, 226, 274, 546, 568, 600, 655, 854
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	4 cut(s)	44, 339, 681, 1012
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	2 cut(s)	778, 822
SfuI	TTCGAA	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	294, 476, 822, 984
SsiI	CCGC	4 cut(s)	109, 326, 353, 884
SspMI	CTAG	2 cut(s)	618, 978
StyD4I	CCNGG	4 cut(s)	42, 337, 679, 1010
StyI	CCWWGG	2 cut(s)	427, 757
TaaI	ACNGT	2 cut(s)	310, 612
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	8 cut(s)	33, 71, 77, 122, 405, 513, 853, 933
TasI	AATT	4 cut(s)	294, 476, 822, 984
TauI	GCSGC	3 cut(s)	329, 356, 886
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	6 cut(s)	8, 99, 147, 413, 731, 741
Tru9I	TTAA	6 cut(s)	8, 99, 147, 413, 731, 741
TscAI	CASTG	1 cut(s)	971
TseFI	GTSAC	4 cut(s)	463, 773, 861, 890
TseI	GCWGC	4 cut(s)	350, 356, 621, 721
Tsp45I	GTSAC	4 cut(s)	463, 773, 861, 890
TspRI	CASTG	1 cut(s)	971
Vha464I	CTTAAG	1 cut(s)	98
XapI	RAATTY	2 cut(s)	294, 476
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	2 cut(s)	618, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.