Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005567

Physical Location & Seq

Genomic Coordinates Forward (+)

27906533 .. 27911109

Gene Structure 4577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGGGTGTATTCAGACCAAGACCAACTCCCCAACTCATGGACCTCATGGCCTCGACAAGTTGAAAGTTGATCATGGGTATGTCAAGGGAGGTGGGGAAGGGAAACCCTTTGCCCTGAAAGCCCCGGGAAAGGAGCCGGTGAGGGTTAATGCCGAGGTTAAGGTTGATAGTGGAGGAGGAGGTGGGAAGGGTGTGGTTAGTAGAGAGACAGAGAGAGGCAATGTTTCAGGAAGGCTTACAGTGACGCAGACTGGAGGAGATGATGATGAAATTGTGGATGGCTGGCCAAAGTGGCTTGTTGATAATGTGCCTCGAGATGTTTTGGATGGCTTGGTTCCGAAGAGTGCTGATTCATATGACAAGCTTGCTAAGGTAGGCCAAGGAACCTACAGCAATGTGTACAAAGCTCGTGATAGAGACACCAAAAAGATTGTTGCTTTGAAAAAGGTCCGGTTTGACACATCAGAGCCAGAGAGTATCAAGTTTATGGCGAGGGAGATAATGATATTACGGAGGCTAGATCATCCCAATGTCATCAAGCTTGAAGGACTAGCCACGTCAAGGATGCAATATAGTCTATATTTGGTCCTTGAATTCATGCAATACGACTTGACTAAAATAATCTCACGTCCTGAAGAGAGGCTCACTGAACCACAGGTAAAGTGCTATATGCAGCAACTGCTTTCTGGTCTCCAGCACTGCCATGAGAAAGGAATTCTACACAGAGACATTAAACCTTCAAACTTGCTAATAGACAAGAATGGGATGCTCAAAATTGCAGATTTTGGGCTAGCGAACTTCTTCCCTCCCAAACAAAAACGTCCTCTTACGAGCCGAGTTGTGACTCTCTGGTATAGAGCCCCAGAGCTCTTGTTAGGCTCTACAGATTACGGAGTTGGTATTGATCTTTGGAGTGCAGGATGTCTACTGGGAGAAATGTTTGTAGGAAGGCCAATTATGCCTGGGAGGACTGAGGTTGAGCAACTTCATAGAATCTTCAAGCTTTGTGGTTCCCCCTCAGATGATTACTGGAAGAAAATGAAGTTACCAACAAGCTTCCGACCCCCACATCATTACAAACCTAGTTTTGAAGAATTCTTCAGGGACTTCTCGATGCCATCATTTGGTCTGTTGATCACTCTTCTTGCTCTTGACCCGACATCTCGTGGCAGTGCTGCTTCTGGTCTCCAGAGCGGATTCTTTAGTTCAGGTCCATTGGCGTGTGACCTTTCAGCTCTACCAGTGCTGTATAAAGAGGAGGATGATCCGGCTCAGAGAAAGGATCGGAAGAAGAGGGTCTACAAAGTAAGGCAATGGTCTCAAACAAACCGTGATTTTCATCAAAGAAGGGTCCAGGGAAGAGGAGAATTTGGATCTTTGAATGAGGAAAAGAATGCTGAAACTGGAAGTACACACAGCCAAGAAATGGGCAACACTAGTGTAAGCAGCAGCGCTTCCTCCGGTTTTAGACCCTCCATACACGAGAACTTGAATGCATCTCTTTCCCCAATAATCCGCTCGCATCAAAAAAGATTTCCAAGCACCGAGGGTCATCCCAATGCTCTCAAGAACATTAATCCTGATGCTCTCAAAAACATCAACAACTTTACTCTCTTACAGGCCTCTATAAAAGATATCGTCAACCACACTGAAGGTGGTACATACCGGAGATCTCATTCAACGCTAGACTTCCGAAATTTTGATCCTGAGAAGATGTTTGGATTCGACAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

578

Amino Acids

64.74

Weight (kDa)

9.3

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	119 - 401	1.6e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	123 - 330	4.5e-33	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	208 - 282	5.4e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03740 AT1G03740 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290
fragaria_vesca	FvH4_6g26290 FvH4_6g26290 FvH4_6g26290 FvH4_6g26290
malus_domestica	MD09G1246500.v1.1 MD17G1239400.v1.1
prunus_persica	Prupe.3G132000_v2.0.a1
pyrus_communis	pycom09g16390 pycom17g24290
rosa_chinensis	RchiOBHm_Chr2g0126731
rosa_laevigata	RLG00000018917
rosa_multiflora	Rmu_sc0000007.1_g000004
rosa_rugosa	Rorug02G0264300 Rorug02G0264400
rosa_samantha	Rh2AG321500 Rh2BG329600 Rh2CG309300 Rh2DG348900
rosa_wichuraiana	Rw2G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	38, 1124, 1426
AccBSI	CCGCTC	2 cut(s)	1194, 1518
AccI	GTMKAC	2 cut(s)	925, 1299
AciI	CCGC	2 cut(s)	1194, 1516
AclWI	GGATC	4 cut(s)	1259, 1290, 1381, 1697
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	5 cut(s)	593, 714, 1094, 1367, 1696
AcuI	CTGAAG	3 cut(s)	654, 1084, 1671
AfaI	GTAC	3 cut(s)	401, 1411, 1660
AfeI	AGCGCT	1 cut(s)	1453
AfiI	CCNNNNNNNGG	5 cut(s)	38, 130, 561, 1124, 1426
AhlI	ACTAGT	1 cut(s)	1436
AjiI	CACGTC	2 cut(s)	558, 629
AjnI	CCWGG	2 cut(s)	961, 1353
AluBI	AGCT	7 cut(s)	364, 407, 541, 868, 1003, 1056, 1235
AluI	AGCT	7 cut(s)	364, 407, 541, 868, 1003, 1056, 1235
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	6 cut(s)	200, 411, 695, 720, 1190, 1323
AlwI	GGATC	4 cut(s)	1259, 1290, 1381, 1697
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	2 cut(s)	124, 312
Aor51HI	AGCGCT	1 cut(s)	1453
AoxI	GGCC	5 cut(s)	49, 284, 376, 950, 1620
ApeKI	GCWGC	4 cut(s)	673, 1175, 1446, 1449
ApoI	RAATTY	5 cut(s)	593, 714, 1094, 1367, 1696
AseI	ATTAAT	1 cut(s)	1575
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	1454
AspS9I	GGNCC	5 cut(s)	41, 448, 586, 1211, 1351
AsuC2I	CCSGG	2 cut(s)	125, 126
AsuHPI	GGTGA	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	790
AvaI	CYCGRG	2 cut(s)	124, 312
AvaII	GGWCC	5 cut(s)	41, 448, 586, 1211, 1351
BalI	TGGCCA	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	862, 870
BarI	GAAGNNNNNNTAC	2 cut(s)	1283, 1315
BauI	CACGAG	3 cut(s)	408, 1164, 1481
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	4 cut(s)	685, 1162, 1458, 1461
BccI	CCATC	3 cut(s)	272, 320, 1126
BciT130I	CCWGG	2 cut(s)	963, 1355
BclI	TGATCA	2 cut(s)	70, 1134
BcnI	CCSGG	2 cut(s)	125, 126
BcoDI	GTCTC	6 cut(s)	200, 411, 695, 720, 1190, 1323
BcuI	ACTAGT	1 cut(s)	1436
BfaI	CTAG	6 cut(s)	518, 551, 791, 1083, 1437, 1685
BfmI	CTRYAG	2 cut(s)	388, 882
BfoI	RGCGCY	1 cut(s)	1455
BglI	GCCNNNNNGGC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	1670
BisI	GCNGC	4 cut(s)	674, 1176, 1447, 1450
BlsI	GCNGC	4 cut(s)	675, 1177, 1448, 1451
Bme1390I	CCNGG	4 cut(s)	125, 126, 963, 1355
Bme18I	GGWCC	5 cut(s)	41, 448, 586, 1211, 1351
BmeT110I	CYCGRG	2 cut(s)	124, 312
BmgBI	CACGTC	2 cut(s)	558, 629
BmgT120I	GGNCC	5 cut(s)	41, 448, 586, 1211, 1351
BmiI	GGNNCC	5 cut(s)	135, 336, 385, 1012, 1352
BmrFI	CCNGG	4 cut(s)	125, 126, 963, 1355
BmrI	ACTGGG	1 cut(s)	938
BmsI	GCATC	6 cut(s)	555, 756, 1104, 1505, 1531, 1573
BmtI	GCTAGC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	938
BpmI	CTGGAG	3 cut(s)	273, 677, 1172
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	1550
BpuMI	CCSGG	2 cut(s)	125, 126
BsaBI	GATNNNNATC	1 cut(s)	1338
BsaI	GGTCTC	3 cut(s)	695, 1190, 1323
BsaJI	CCNNGG	7 cut(s)	123, 124, 153, 379, 962, 1354, 1545
BsaWI	WCCGGW	3 cut(s)	450, 1460, 1665
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 130, 561, 1124, 1426
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	5 cut(s)	256, 933, 1034, 1241, 1408
Bse3DI	GCAATG	3 cut(s)	226, 400, 1319
Bse8I	GATNNNNATC	1 cut(s)	1338
BseBI	CCWGG	2 cut(s)	963, 1355
BseDI	CCNNGG	7 cut(s)	123, 124, 153, 379, 962, 1354, 1545
BseGI	GGATG	8 cut(s)	283, 331, 523, 570, 771, 926, 1267, 1552
BseJI	GATNNNNATC	1 cut(s)	1338
BseLI	CCNNNNNNNGG	5 cut(s)	38, 130, 561, 1124, 1426
BseMI	GCAATG	3 cut(s)	226, 400, 1319
BseMII	CTCAG	4 cut(s)	963, 1032, 1286, 1698
BseNI	ACTGG	5 cut(s)	256, 933, 1034, 1241, 1408
BseRI	GAGGAG	5 cut(s)	189, 192, 270, 1271, 1377
BseXI	GCAGC	4 cut(s)	685, 1162, 1458, 1461
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	5 cut(s)	51, 286, 378, 952, 1622
BsiHKAI	GWGCWC	1 cut(s)	870
BsiHKCI	CYCGRG	2 cut(s)	124, 312
BsiSI	CCGG	6 cut(s)	125, 137, 451, 1268, 1461, 1666
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	5 cut(s)	38, 130, 561, 1124, 1426
BsmAI	GTCTC	6 cut(s)	200, 411, 695, 720, 1190, 1323
BsmFI	GGGAC	1 cut(s)	1118
BsmI	GAATGC	2 cut(s)	1399, 1498
BsnI	GGCC	5 cut(s)	51, 286, 378, 952, 1622
Bso31I	GGTCTC	3 cut(s)	695, 1190, 1323
BsoBI	CYCGRG	2 cut(s)	124, 312
Bsp1286I	GDGCHC	2 cut(s)	862, 870
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
BspACI	CCGC	2 cut(s)	1194, 1516
BspANI	GGCC	5 cut(s)	51, 286, 378, 952, 1622
BspCNI	CTCAG	4 cut(s)	964, 1031, 1285, 1699
BspLI	GGNNCC	5 cut(s)	135, 336, 385, 1012, 1352
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	4 cut(s)	1259, 1290, 1381, 1697
BspTNI	GGTCTC	3 cut(s)	695, 1190, 1323
BsrBI	CCGCTC	2 cut(s)	1194, 1518
BsrDI	GCAATG	3 cut(s)	226, 400, 1319
BsrFI	RCCGGY	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	5 cut(s)	256, 933, 1034, 1241, 1408
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	7 cut(s)	123, 124, 153, 379, 962, 1354, 1545
BssMI	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
BssSI	CACGAG	3 cut(s)	408, 1164, 1481
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	3 cut(s)	408, 1164, 1481
Bst2UI	CCWGG	2 cut(s)	963, 1355
Bst4CI	ACNGT	2 cut(s)	241, 1331
Bst6I	CTCTTC	5 cut(s)	335, 630, 1146, 1286, 1354
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	284, 366, 792, 1520
BstDEI	CTNAG	5 cut(s)	369, 972, 1018, 1272, 1707
BstF5I	GGATG	8 cut(s)	283, 331, 523, 570, 771, 926, 1267, 1552
BstH2I	RGCGCY	1 cut(s)	1455
BstHHI	GCGC	1 cut(s)	1454
BstKTI	GATC	9 cut(s)	73, 523, 907, 1137, 1267, 1285, 1376, 1673, 1705
BstMAI	GTCTC	6 cut(s)	200, 411, 695, 720, 1190, 1323
BstMBI	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 292, 679, 958
BstNI	CCWGG	2 cut(s)	963, 1355
BstSCI	CCNGG	4 cut(s)	123, 124, 961, 1353
BstSFI	CTRYAG	2 cut(s)	388, 882
BstV1I	GCAGC	4 cut(s)	685, 1162, 1458, 1461
BstX2I	RGATCY	2 cut(s)	1373, 1670
BstYI	RGATCY	2 cut(s)	1373, 1670
BsuRI	GGCC	5 cut(s)	51, 286, 378, 952, 1622
BtrI	CACGTC	2 cut(s)	558, 629
BtsCI	GGATG	8 cut(s)	283, 331, 523, 570, 771, 926, 1267, 1552
BtsI	GCAGTG	2 cut(s)	697, 1177
BtsIMutI	CAGTG	6 cut(s)	246, 645, 697, 1177, 1248, 1647
Cac8I	GCNNGC	4 cut(s)	284, 366, 792, 1520
CaiI	CAGNNNCTG	1 cut(s)	679
CfoI	GCGC	1 cut(s)	1454
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	5 cut(s)	41, 448, 586, 1211, 1351
Cfr9I	CCCGGG	1 cut(s)	124
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	400, 1410, 1659
CspCI	CAANNNNNGTGG	4 cut(s)	73, 108, 988, 1023
CviAII	CATG	5 cut(s)	38, 47, 74, 598, 704
CviQI	GTAC	3 cut(s)	400, 1410, 1659
DdeI	CTNAG	5 cut(s)	369, 972, 1018, 1272, 1707
DpnI	GATC	9 cut(s)	72, 522, 906, 1136, 1266, 1284, 1375, 1672, 1704
DpnII	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	5 cut(s)	335, 630, 1146, 1286, 1354
EarI	CTCTTC	5 cut(s)	335, 630, 1146, 1286, 1354
Ecl136II	GAGCTC	1 cut(s)	868
Eco130I	CCWWGG	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	1622
Eco24I	GRGCYC	2 cut(s)	862, 870
Eco31I	GGTCTC	3 cut(s)	695, 1190, 1323
Eco32I	GATATC	1 cut(s)	1636
Eco47I	GGWCC	5 cut(s)	41, 448, 586, 1211, 1351
Eco47III	AGCGCT	1 cut(s)	1453
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	3 cut(s)	654, 1084, 1671
Eco88I	CYCGRG	2 cut(s)	124, 312
EcoICRI	GAGCTC	1 cut(s)	868
EcoRI	GAATTC	3 cut(s)	593, 714, 1094
EcoRII	CCWGG	2 cut(s)	961, 1353
EcoRV	GATATC	1 cut(s)	1636
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	2 cut(s)	862, 870
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	5 cut(s)	41, 50, 77, 601, 707
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	5 cut(s)	37, 46, 73, 597, 703
FauNDI	CATATG	1 cut(s)	355
FbaI	TGATCA	2 cut(s)	70, 1134
FblI	GTMKAC	2 cut(s)	925, 1299
Fnu4HI	GCNGC	4 cut(s)	674, 1176, 1447, 1450
FokI	GGATG	8 cut(s)	290, 338, 510, 577, 778, 933, 1274, 1539
FriOI	GRGCYC	2 cut(s)	862, 870
Fsp4HI	GCNGC	4 cut(s)	674, 1176, 1447, 1450
FspBI	CTAG	6 cut(s)	518, 551, 791, 1083, 1437, 1685
GlaI	GCGC	1 cut(s)	1453
GluI	GCNGC	4 cut(s)	674, 1176, 1447, 1450
GsuI	CTGGAG	3 cut(s)	273, 677, 1172
HaeII	RGCGCY	1 cut(s)	1455
HaeIII	GGCC	5 cut(s)	51, 286, 378, 952, 1622
HapII	CCGG	6 cut(s)	125, 137, 451, 1268, 1461, 1666
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	1454
Hin1II	CATG	5 cut(s)	41, 50, 77, 601, 707
Hin6I	GCGC	1 cut(s)	1452
HinP1I	GCGC	1 cut(s)	1452
HincII	GTYRAC	1 cut(s)	1642
HindII	GTYRAC	1 cut(s)	1642
HindIII	AAGCTT	4 cut(s)	362, 539, 1001, 1054
HinfI	GANTC	5 cut(s)	350, 844, 993, 1197, 1722
HpaII	CCGG	6 cut(s)	125, 137, 451, 1268, 1461, 1666
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	5 cut(s)	400, 926, 1300, 1412, 1642
Hpy188I	TCNGA	8 cut(s)	15, 339, 466, 1021, 1061, 1275, 1287, 1694
Hpy8I	GTNNAC	5 cut(s)	400, 926, 1300, 1412, 1642
HpyAV	CCTTC	8 cut(s)	92, 181, 225, 539, 747, 942, 1341, 1646
HpyCH4III	ACNGT	2 cut(s)	241, 1331
HpyCH4IV	ACGT	3 cut(s)	557, 628, 820
HpyCH4V	TGCA	6 cut(s)	568, 601, 673, 779, 917, 1496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 292, 679, 958
HpyF3I	CTNAG	5 cut(s)	369, 972, 1018, 1272, 1707
HpySE526I	ACGT	3 cut(s)	557, 628, 820
Hsp92II	CATG	5 cut(s)	41, 50, 77, 601, 707
HspAI	GCGC	1 cut(s)	1452
Ksp22I	TGATCA	2 cut(s)	70, 1134
Kzo9I	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	4 cut(s)	685, 1162, 1458, 1461
LweI	GCATC	6 cut(s)	555, 756, 1104, 1505, 1531, 1573
MaeI	CTAG	6 cut(s)	518, 551, 791, 1083, 1437, 1685
MaeII	ACGT	3 cut(s)	557, 628, 820
MaeIII	GTNAC	4 cut(s)	241, 841, 1044, 1223
MalI	GATC	9 cut(s)	72, 522, 906, 1136, 1266, 1284, 1375, 1672, 1704
MbiI	CCGCTC	2 cut(s)	1194, 1518
MboI	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
MflI	RGATCY	2 cut(s)	1373, 1670
MhlI	GDGCHC	2 cut(s)	862, 870
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	8 cut(s)	270, 593, 714, 774, 954, 1094, 1367, 1696
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	1 cut(s)	1084
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	1498
MroXI	GAANNNNTTC	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	4 cut(s)	147, 159, 732, 1575
MslI	CAYNNNNRTG	5 cut(s)	78, 528, 702, 1219, 1557
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	6 cut(s)	125, 137, 451, 1268, 1461, 1666
MspR9I	CCNGG	4 cut(s)	125, 126, 963, 1355
Mva1269I	GAATGC	2 cut(s)	1399, 1498
MvaI	CCWGG	2 cut(s)	963, 1355
MwoI	GCNNNNNNNGC	4 cut(s)	119, 292, 679, 958
NciI	CCSGG	2 cut(s)	125, 126
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	5 cut(s)	41, 50, 77, 601, 707
NlaIV	GGNNCC	5 cut(s)	135, 336, 385, 1012, 1352
NmeAIII	GCCGAG	2 cut(s)	178, 860
NmuCI	GTSAC	3 cut(s)	241, 841, 1223
NsiI	ATGCAT	1 cut(s)	1498
PaeR7I	CTCGAG	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	1622
PctI	GAATGC	2 cut(s)	1399, 1498
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	4 cut(s)	350, 993, 1197, 1722
PflMI	CCANNNNNTGG	3 cut(s)	38, 1124, 1426
PkrI	GCNGC	4 cut(s)	675, 1177, 1448, 1451
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PshBI	ATTAAT	1 cut(s)	1575
Psp124BI	GAGCTC	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	961, 1353
PspGI	CCWGG	2 cut(s)	961, 1353
PspN4I	GGNNCC	5 cut(s)	135, 336, 385, 1012, 1352
PspPI	GGNCC	5 cut(s)	41, 448, 586, 1211, 1351
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	1373, 1670
RsaI	GTAC	3 cut(s)	401, 1411, 1660
RsaNI	GTAC	3 cut(s)	400, 1410, 1659
RseI	CAYNNNNRTG	5 cut(s)	78, 528, 702, 1219, 1557
SacI	GAGCTC	1 cut(s)	870
SaqAI	TTAA	4 cut(s)	147, 159, 732, 1575
SatI	GCNGC	4 cut(s)	674, 1176, 1447, 1450
Sau3AI	GATC	9 cut(s)	70, 520, 904, 1134, 1264, 1282, 1373, 1670, 1702
Sau96I	GGNCC	5 cut(s)	41, 448, 586, 1211, 1351
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	4 cut(s)	125, 126, 963, 1355
SduI	GDGCHC	2 cut(s)	862, 870
SfaNI	GCATC	6 cut(s)	555, 756, 1104, 1505, 1531, 1573
SfcI	CTRYAG	2 cut(s)	388, 882
Sfr274I	CTCGAG	1 cut(s)	312
SinI	GGWCC	5 cut(s)	41, 448, 586, 1211, 1351
SlaI	CTCGAG	1 cut(s)	312
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	5 cut(s)	78, 528, 702, 1219, 1557
SmlI	CTYRAG	2 cut(s)	312, 1565
SmoI	CTYRAG	2 cut(s)	312, 1565
SpeI	ACTAGT	1 cut(s)	1436
Sse9I	AATT	8 cut(s)	270, 593, 714, 774, 954, 1094, 1367, 1696
SseBI	AGGCCT	1 cut(s)	1622
SsiI	CCGC	2 cut(s)	1194, 1516
SspMI	CTAG	6 cut(s)	518, 551, 791, 1083, 1437, 1685
SstI	GAGCTC	1 cut(s)	870
StuI	AGGCCT	1 cut(s)	1622
StyD4I	CCNGG	4 cut(s)	123, 124, 961, 1353
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	241, 1331
TaiI	ACGT	3 cut(s)	560, 631, 823
TaqI	TCGA	4 cut(s)	54, 313, 1112, 1725
TasI	AATT	8 cut(s)	270, 593, 714, 774, 954, 1094, 1367, 1696
TatI	WGTACW	2 cut(s)	399, 1409
TfiI	GAWTC	4 cut(s)	350, 993, 1197, 1722
Tru1I	TTAA	4 cut(s)	147, 159, 732, 1575
Tru9I	TTAA	4 cut(s)	147, 159, 732, 1575
TscAI	CASTG	6 cut(s)	246, 652, 704, 1177, 1248, 1654
TseFI	GTSAC	3 cut(s)	241, 841, 1223
TseI	GCWGC	4 cut(s)	673, 1175, 1446, 1449
Tsp45I	GTSAC	3 cut(s)	241, 841, 1223
TspDTI	ATGAA	6 cut(s)	282, 342, 586, 977, 1055, 1328
TspGWI	ACGGA	2 cut(s)	526, 906
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	6 cut(s)	246, 652, 704, 1177, 1248, 1654
Van91I	CCANNNNNTGG	3 cut(s)	38, 1124, 1426
VpaK11BI	GGWCC	5 cut(s)	41, 448, 586, 1211, 1351
VspI	ATTAAT	1 cut(s)	1575
XapI	RAATTY	5 cut(s)	593, 714, 1094, 1367, 1696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1652
XhoI	CTCGAG	1 cut(s)	312
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	925, 1299
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	6 cut(s)	518, 551, 791, 1083, 1437, 1685
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.