Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005567

Physical Location & Seq

Genomic Coordinates Reverse (-)

16660734 .. 16663144

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATCGAGCCTCCTCAACCTTATAGAAGATGCGTGGCAGAGACTTTTAAGGACCTTCCTGCTGCAGCTCTGCAGCTTATGGACATTTTACTTTCTGTTGATCCTGCTGATCGAGGAACTGCTGCAATTGCCCTCAAGAATGAGTTCTTCACCACAAAGCCTTTTCCTTGTGATCCTTCAAGTTTTCCCAAGTACCCCCCCAGCAAAGAGATTGATGCCAAATTGCGAGAAGAAGAAGCAAGAAAGCAAGGAGCCAGTGGAGGAAGGGGTCAGAAGGAAGACCTTGGCAGGAGAGCACAACCTCCAGCAGTTGCAGGAACAAATGCTAACTCTGAGTCCATTGCATCAGTGCAGAGAAGACAAGGCCATTCCAACCCAAAGGTCCGAAGTGAAATGTTCAACCCACATAGGGAACAAACTCTTTCTGGGTTTCTGGTTGATCCAACCAAACATTTGCCAAGCGATAAAGATGCTAGAAAAGATTTCATGGAGCACCAGAATAAGAGGACTTCAATTTCAGGACCACTAATCCATGGACCTGGATGGGCTAAGTCTGGAAAGGAACTTAATGATTCCTTTTTGAGTTCAAATAGAGCCAACTTGTCGAAATTATCTGGTTTAGTAATGGCTAGGACTGCATTGTCCGACGACCAACAAGAAAAACCTGGCCCATCAGGACAAGAAACAATGAAGCCCGTAGGCGGATTTCCAGGGTCACTTGATCAGGAGGAATCCGCAAAGAAGCGGGAGCGGATGTATTACACACAGAGAGTTGCCAGTTCTCGTCAGATGGAAGATGAGAATGGCTCCATTAAAGAACCAAATATGCATGGTCATGGGCCCAGGGGGAACAAAATTTACGTGTCTGGTCCATTACTTATTTCTTCAAACAATATGGATCAGATGCTTAAAGACCATGACCGCCGGATCCAAGAATACGCCCGGCGTGCTCGACTGGAGAAGAGCAGACATGGGACGCAAGTGACAGAAAATTCAACCTTATCCTCTAGACATCGAGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

342

Amino Acids

37.87

Weight (kDa)

9.51

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03740 AT1G03740 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290 AT5G44290
fragaria_vesca	FvH4_6g26290 FvH4_6g26290 FvH4_6g26290 FvH4_6g26290
malus_domestica	MD09G1246500.v1.1 MD17G1239400.v1.1
prunus_persica	Prupe.3G132000_v2.0.a1
pyrus_communis	pycom09g16390 pycom17g24290
rosa_chinensis	RchiOBHm_Chr2g0126731
rosa_laevigata	RLG00000018917
rosa_multiflora	Rmu_sc0000007.1_g000004
rosa_rugosa	Rorug02G0264300 Rorug02G0264400
rosa_samantha	Rh2AG321500 Rh2BG329600 Rh2CG309300 Rh2DG348900
rosa_wichuraiana	Rw2G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	640
AccBSI	CCGCTC	1 cut(s)	751
AciI	CCGC	5 cut(s)	702, 735, 745, 751, 922
AclWI	GGATC	6 cut(s)	95, 167, 434, 906, 922, 935
AcsI	RAATTY	2 cut(s)	855, 991
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	409, 701
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	6 cut(s)	180, 400, 513, 588, 888, 996
AjnI	CCWGG	4 cut(s)	538, 664, 709, 842
AluBI	AGCT	3 cut(s)	68, 76, 1019
AluI	AGCT	3 cut(s)	68, 76, 1019
Alw21I	GWGCWC	3 cut(s)	298, 495, 952
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	6 cut(s)	95, 167, 434, 906, 922, 935
AoxI	GGCC	3 cut(s)	364, 667, 839
ApaI	GGGCCC	1 cut(s)	843
ApeKI	GCWGC	4 cut(s)	62, 65, 73, 122
ApoI	RAATTY	2 cut(s)	855, 991
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	8 cut(s)	52, 382, 521, 536, 668, 839, 840, 869
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	5 cut(s)	52, 382, 521, 536, 869
BaeGI	GKGCMC	1 cut(s)	843
BamHI	GGATCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	843
BbsI	GAAGAC	2 cut(s)	285, 364
Bbv12I	GWGCWC	3 cut(s)	298, 495, 952
BbvI	GCAGC	4 cut(s)	49, 77, 85, 109
BccI	CCATC	3 cut(s)	537, 679, 784
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	4 cut(s)	540, 666, 711, 844
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	474, 630, 1008
BfmI	CTRYAG	2 cut(s)	63, 71
BisI	GCNGC	4 cut(s)	63, 66, 74, 123
BlsI	GCNGC	4 cut(s)	64, 67, 75, 124
Bme1390I	CCNGG	5 cut(s)	540, 666, 711, 844, 943
Bme18I	GGWCC	5 cut(s)	52, 382, 521, 536, 869
BmgT120I	GGNCC	8 cut(s)	52, 382, 521, 536, 668, 839, 840, 869
BmiI	GGNNCC	4 cut(s)	253, 808, 841, 929
BmrFI	CCNGG	5 cut(s)	540, 666, 711, 844, 943
BmsI	GCATC	5 cut(s)	20, 205, 353, 460, 894
BpiI	GAAGAC	2 cut(s)	285, 364
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	2 cut(s)	288, 977
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	943
BsaAI	YACGTR	1 cut(s)	862
BsaJI	CCNNGG	5 cut(s)	283, 532, 710, 842, 843
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 701
Bse1I	ACTGG	3 cut(s)	255, 777, 960
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	4 cut(s)	540, 666, 711, 844
BseDI	CCNNGG	5 cut(s)	283, 532, 710, 842, 843
BseGI	GGATG	2 cut(s)	548, 759
BseLI	CCNNNNNNNGG	2 cut(s)	409, 701
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	3 cut(s)	255, 777, 960
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	4 cut(s)	49, 77, 85, 109
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	3 cut(s)	366, 669, 841
BsiHKAI	GWGCWC	3 cut(s)	298, 495, 952
BsiSI	CCGG	2 cut(s)	925, 943
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	2 cut(s)	409, 701
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	988
BsnI	GGCC	3 cut(s)	366, 669, 841
Bsp120I	GGGCCC	1 cut(s)	839
Bsp1286I	GDGCHC	4 cut(s)	298, 495, 843, 952
Bsp143I	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	5 cut(s)	702, 735, 745, 751, 922
BspANI	GGCC	3 cut(s)	366, 669, 841
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	253, 808, 841, 929
BspMAI	CTGCAG	2 cut(s)	67, 75
BspPI	GGATC	6 cut(s)	95, 167, 434, 906, 922, 935
BspQI	GCTCTTC	1 cut(s)	956
BsrBI	CCGCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	255, 777, 960
BssECI	CCNNGG	5 cut(s)	283, 532, 710, 842, 843
BssMI	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
BssT1I	CCWWGG	2 cut(s)	283, 532
Bst2UI	CCWGG	4 cut(s)	540, 666, 711, 844
Bst6I	CTCTTC	1 cut(s)	956
BstBAI	YACGTR	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	948
BstDEI	CTNAG	2 cut(s)	333, 549
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	548, 759
BstKTI	GATC	8 cut(s)	6, 103, 112, 175, 442, 724, 901, 930
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 635, 947
BstNI	CCWGG	4 cut(s)	540, 666, 711, 844
BstSCI	CCNGG	5 cut(s)	538, 664, 709, 842, 941
BstSFI	CTRYAG	2 cut(s)	63, 71
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	49, 77, 85, 109
BstV2I	GAAGAC	2 cut(s)	285, 364
BstX2I	RGATCY	1 cut(s)	927
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	927
BsuRI	GGCC	3 cut(s)	366, 669, 841
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	548, 759
BtsIMutI	CAGTG	2 cut(s)	262, 354
Cac8I	GCNNGC	1 cut(s)	948
Cfr13I	GGNCC	8 cut(s)	52, 382, 521, 536, 668, 839, 840, 869
CseI	GACGC	1 cut(s)	985
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	6 cut(s)	487, 533, 830, 836, 917, 971
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	333, 549
DpnI	GATC	8 cut(s)	5, 102, 111, 174, 441, 723, 900, 929
DpnII	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
DrdI	GACNNNNNNGTC	1 cut(s)	640
DseDI	GACNNNNNNGTC	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	283, 532
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	5 cut(s)	52, 382, 521, 536, 869
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	538, 664, 709, 842
EcoT14I	CCWWGG	2 cut(s)	283, 532
EcoT22I	ATGCAT	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	2 cut(s)	283, 532
FaeI	CATG	6 cut(s)	490, 536, 833, 839, 920, 974
FaqI	GGGAC	1 cut(s)	988
FatI	CATG	6 cut(s)	486, 532, 829, 835, 916, 970
FauI	CCCGC	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	63, 66, 74, 123
FokI	GGATG	2 cut(s)	555, 766
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	4 cut(s)	63, 66, 74, 123
FspBI	CTAG	3 cut(s)	474, 630, 1008
GluI	GCNGC	4 cut(s)	63, 66, 74, 123
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	2 cut(s)	288, 977
HaeIII	GGCC	3 cut(s)	366, 669, 841
HapII	CCGG	2 cut(s)	925, 943
HgaI	GACGC	1 cut(s)	985
Hin1II	CATG	6 cut(s)	490, 536, 833, 839, 920, 974
HinfI	GANTC	3 cut(s)	335, 572, 731
HpaII	CCGG	2 cut(s)	925, 943
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	273, 334, 386, 646, 789, 903
Hpy188III	TCNNGA	6 cut(s)	136, 519, 555, 675, 725, 1008
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	4 cut(s)	65, 186, 258, 268
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	8 cut(s)	65, 73, 125, 314, 344, 352, 638, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 635, 947
HpyF3I	CTNAG	2 cut(s)	333, 549
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	6 cut(s)	490, 536, 833, 839, 920, 974
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
LguI	GCTCTTC	1 cut(s)	956
LmnI	GCTCC	4 cut(s)	251, 490, 748, 812
Lsp1109I	GCAGC	4 cut(s)	49, 77, 85, 109
LweI	GCATC	5 cut(s)	20, 205, 353, 460, 894
MaeI	CTAG	3 cut(s)	474, 630, 1008
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	2 cut(s)	714, 982
MalI	GATC	8 cut(s)	5, 102, 111, 174, 441, 723, 900, 929
MbiI	CCGCTC	1 cut(s)	751
MboI	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
MboII	GAAGA	9 cut(s)	39, 139, 242, 245, 290, 369, 806, 876, 973
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	4 cut(s)	298, 495, 843, 952
MluCI	AATT	6 cut(s)	126, 221, 513, 608, 855, 991
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	3 cut(s)	396, 467, 669
MnlI	CCTC	9 cut(s)	21, 24, 107, 143, 254, 312, 498, 721, 1015
Mph1103I	ATGCAT	1 cut(s)	831
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	4 cut(s)	48, 567, 813, 909
MslI	CAYNNNNRTG	1 cut(s)	834
MspI	CCGG	2 cut(s)	925, 943
MspR9I	CCNGG	5 cut(s)	540, 666, 711, 844, 943
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	4 cut(s)	540, 666, 711, 844
MwoI	GCNNNNNNNGC	3 cut(s)	128, 635, 947
NciI	CCSGG	1 cut(s)	943
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
NlaIII	CATG	6 cut(s)	490, 536, 833, 839, 920, 974
NlaIV	GGNNCC	4 cut(s)	253, 808, 841, 929
NmuCI	GTSAC	2 cut(s)	714, 982
NsiI	ATGCAT	1 cut(s)	831
PasI	CCCWGGG	1 cut(s)	843
PciSI	GCTCTTC	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	572, 731
PkrI	GCNGC	4 cut(s)	64, 67, 75, 124
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	4 cut(s)	538, 664, 709, 842
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	4 cut(s)	538, 664, 709, 842
PspN4I	GGNNCC	4 cut(s)	253, 808, 841, 929
PspOMI	GGGCCC	1 cut(s)	839
PspPI	GGNCC	8 cut(s)	52, 382, 521, 536, 668, 839, 840, 869
PspPPI	RGGWCCY	1 cut(s)	52
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstI	CTGCAG	2 cut(s)	67, 75
PsuI	RGATCY	1 cut(s)	927
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	956
SaqAI	TTAA	4 cut(s)	48, 567, 813, 909
SatI	GCNGC	4 cut(s)	63, 66, 74, 123
Sau3AI	GATC	8 cut(s)	3, 100, 109, 172, 439, 721, 898, 927
Sau96I	GGNCC	8 cut(s)	52, 382, 521, 536, 668, 839, 840, 869
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	5 cut(s)	540, 666, 711, 844, 943
SduI	GDGCHC	4 cut(s)	298, 495, 843, 952
SfaNI	GCATC	5 cut(s)	20, 205, 353, 460, 894
SfcI	CTRYAG	2 cut(s)	63, 71
SinI	GGWCC	5 cut(s)	52, 382, 521, 536, 869
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	6 cut(s)	126, 221, 513, 608, 855, 991
SsiI	CCGC	5 cut(s)	702, 735, 745, 751, 922
SspMI	CTAG	3 cut(s)	474, 630, 1008
StyD4I	CCNGG	5 cut(s)	538, 664, 709, 842, 941
StyI	CCWWGG	2 cut(s)	283, 532
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	5 cut(s)	6, 112, 605, 952, 1015
TasI	AATT	6 cut(s)	126, 221, 513, 608, 855, 991
TfiI	GAWTC	2 cut(s)	572, 731
Tru1I	TTAA	4 cut(s)	48, 567, 813, 909
Tru9I	TTAA	4 cut(s)	48, 567, 813, 909
TscAI	CASTG	2 cut(s)	262, 354
TseFI	GTSAC	2 cut(s)	714, 982
TseI	GCWGC	4 cut(s)	62, 65, 73, 122
Tsp45I	GTSAC	2 cut(s)	714, 982
TspDTI	ATGAA	2 cut(s)	475, 704
TspRI	CASTG	2 cut(s)	262, 354
VpaK11BI	GGWCC	5 cut(s)	52, 382, 521, 536, 869
XapI	RAATTY	2 cut(s)	855, 991
XbaI	TCTAGA	1 cut(s)	1007
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	3 cut(s)	474, 630, 1008
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.