Prupe.1G040800_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019693
Physical Location & Seq
Forward (+)
2929218 .. 2929838
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G040800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 621 bp
ATGTCTGGCTGCAACTGGAACATGAGGCATGGTGGAAATGTGCATGGTTCGAACTGTGCCCCGGCATCGATGCCGAGCGGTTCAACAGAAATTGCATGTAGAATATGTGACCGTGTGTTTATGAGCACCCAAGCCCTCATAAACCACATAGAGTCTCACATAGTGGATGATGGCCTCACAGCCTCAAGATTAAGGCAGCTCACTCAGCAAACCAACACTAACCCTCCGATCCGAGGCAATCCTGCATTTCCATTGCAAAACCCTTTTCATCAACGAAACCCTTTCCATGATGTTCATAATAACCAAATTGGTTTTGCACCCCCGCCGCCTCATCATCAATATCCATATCCACAACAACAACTTTCTCCTTATGCACTGCCAAGAAACGTTAACGTTAACGTTAACCAGGGAGTTGTTGGGTCGCATTACATGGTGATGCAGTCTGCTAATCAAACGGCGGCGCGCATGGCGAGTGAGGAGGACGATCTTTCCAGTGATTGCACCATGCCGCTTCTCAGTCAGCTGGAGCGCCCTCTTCCGCCGGTGAATTATGAATTGGACCATCGTGGAAACATTGGTGAAGCAAGTTCAGATAATCTGGATTTGACCTTGAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.8

Weight (kDa)

6.08

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03860
prunus_persica Prupe.1G040800_v2.0.a1
rosa_laevigata RLG00000009735
rosa_multiflora Rmu_sc0000928.1_g000001
rosa_roxburghii Rroxscaffold_5G00338880
rosa_rugosa Rorug03G0371400
rosa_samantha Rh4DG045800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 78
AccII CGCG 1 cut(s) 463
AciI CCGC 6 cut(s) 78, 323, 326, 458, 509, 539
AclI AACGTT 3 cut(s) 387, 393, 399
AclWI GGATC 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 84, 613
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 3 cut(s) 199, 523, 616
AluI AGCT 3 cut(s) 199, 523, 616
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 9, 196
AspLEI GCGC 3 cut(s) 463, 465, 531
AspS9I GGNCC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 3 cut(s) 445, 556, 590
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 164, 570
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 619
BfoI RGCGCY 1 cut(s) 532
BisI GCNGC 5 cut(s) 10, 197, 326, 459, 509
BlsI GCNGC 5 cut(s) 11, 198, 327, 460, 510
Bme1390I CCNGG 2 cut(s) 62, 407
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 559
BmrFI CCNGG 2 cut(s) 62, 407
BmsI GCATC 3 cut(s) 60, 74, 426
BpmI CTGGAG 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 60, 232, 406
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 20, 492
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 60, 232, 406
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 218, 529
BseNI ACTGG 2 cut(s) 20, 492
BsePI GCGCGC 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 62, 542
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 61, 128
Bsp143I GATC 2 cut(s) 228, 484
BspACI CCGC 6 cut(s) 78, 323, 326, 458, 509, 539
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 217, 528
BspDI ATCGAT 1 cut(s) 68
BspFNI CGCG 1 cut(s) 463
BspPI GGATC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 2 cut(s) 20, 492
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 60, 232, 406
BssHII GCGCGC 1 cut(s) 461
BssMI GATC 2 cut(s) 228, 484
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 56, 113
Bst6I CTCTTC 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 204, 515
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 3 cut(s) 463, 465, 531
BstKTI GATC 2 cut(s) 231, 487
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 228, 484
BstMWI GCNNNNNNNGC 2 cut(s) 205, 467
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 60, 405
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 68
BsuRI GGCC 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 68
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 374, 499
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 3 cut(s) 463, 465, 531
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 559
ClaI ATCGAT 1 cut(s) 68
CviAII CATG 8 cut(s) 22, 29, 44, 96, 287, 430, 466, 505
CviJI RGCY 7 cut(s) 9, 134, 174, 182, 199, 523, 616
CviKI_1 RGCY 7 cut(s) 9, 134, 174, 182, 199, 523, 616
DdeI CTNAG 2 cut(s) 204, 515
DpnI GATC 2 cut(s) 230, 486
DpnII GATC 2 cut(s) 228, 484
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 8 cut(s) 25, 32, 47, 99, 290, 433, 469, 508
FatI CATG 8 cut(s) 21, 28, 43, 95, 286, 429, 465, 504
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 10, 197, 326, 459, 509
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 5 cut(s) 10, 197, 326, 459, 509
FspBI CTAG 1 cut(s) 619
GlaI GCGC 3 cut(s) 462, 464, 530
GluI GCNGC 5 cut(s) 10, 197, 326, 459, 509
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 62, 542
HhaI GCGC 3 cut(s) 463, 465, 531
Hin1II CATG 8 cut(s) 25, 32, 47, 99, 290, 433, 469, 508
Hin6I GCGC 3 cut(s) 461, 463, 529
HinP1I GCGC 3 cut(s) 461, 463, 529
HincII GTYRAC 3 cut(s) 391, 397, 403
HindII GTYRAC 3 cut(s) 391, 397, 403
HinfI GANTC 1 cut(s) 152
HpaI GTTAAC 3 cut(s) 391, 397, 403
HpaII CCGG 2 cut(s) 62, 542
HphI GGTGA 3 cut(s) 445, 556, 590
Hpy166II GTNNAC 3 cut(s) 391, 397, 403
Hpy188I TCNGA 3 cut(s) 228, 233, 592
Hpy188III TCNNGA 2 cut(s) 186, 599
Hpy8I GTNNAC 3 cut(s) 391, 397, 403
HpyCH4III ACNGT 2 cut(s) 56, 113
HpyCH4IV ACGT 3 cut(s) 387, 393, 399
HpyCH4V TGCA 9 cut(s) 12, 43, 95, 245, 256, 317, 374, 439, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 467
HpyF3I CTNAG 2 cut(s) 204, 515
HpySE526I ACGT 3 cut(s) 387, 393, 399
Hsp92II CATG 8 cut(s) 25, 32, 47, 99, 290, 433, 469, 508
HspAI GCGC 3 cut(s) 461, 463, 529
KspAI GTTAAC 3 cut(s) 391, 397, 403
Kzo9I GATC 2 cut(s) 228, 484
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 8 cut(s) 75, 255, 392, 419, 505, 509, 555, 584
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 60, 74, 426
MaeI CTAG 1 cut(s) 619
MaeII ACGT 3 cut(s) 387, 393, 399
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 230, 486
MbiI CCGCTC 1 cut(s) 78
MboI GATC 2 cut(s) 228, 484
MboII GAAGA 1 cut(s) 527
MhlI GDGCHC 2 cut(s) 61, 128
MluCI AATT 4 cut(s) 90, 306, 547, 554
MlyI GAGTC 1 cut(s) 161
MseI TTAA 4 cut(s) 191, 390, 396, 402
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 2 cut(s) 62, 542
MspR9I CCNGG 2 cut(s) 62, 407
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 2 cut(s) 205, 467
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 228, 484
NlaIII CATG 8 cut(s) 25, 32, 47, 99, 290, 433, 469, 508
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 99
NspV TTCGAA 1 cut(s) 50
PauI GCGCGC 1 cut(s) 461
PkrI GCNGC 5 cut(s) 11, 198, 327, 460, 510
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp1406I AACGTT 3 cut(s) 387, 393, 399
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 559
PteI GCGCGC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 4 cut(s) 191, 390, 396, 402
SatI GCNGC 5 cut(s) 10, 197, 326, 459, 509
Sau3AI GATC 2 cut(s) 228, 484
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 62, 407
SduI GDGCHC 2 cut(s) 61, 128
SetI ASST 7 cut(s) 201, 390, 396, 402, 525, 611, 618
SfaNI GCATC 3 cut(s) 60, 74, 426
SfuI TTCGAA 1 cut(s) 50
SgrAI CRCCGGYG 1 cut(s) 541
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 4 cut(s) 90, 306, 547, 554
SsiI CCGC 6 cut(s) 78, 323, 326, 458, 509, 539
SspMI CTAG 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 60, 405
TaaI ACNGT 2 cut(s) 56, 113
TaiI ACGT 3 cut(s) 390, 396, 402
TaqI TCGA 2 cut(s) 50, 68
TasI AATT 4 cut(s) 90, 306, 547, 554
TauI GCSGC 3 cut(s) 328, 461, 511
Tru1I TTAA 4 cut(s) 191, 390, 396, 402
Tru9I TTAA 4 cut(s) 191, 390, 396, 402
TscAI CASTG 2 cut(s) 381, 499
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 9, 196
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 257, 284, 567
TspRI CASTG 2 cut(s) 381, 499
VpaK11BI GGWCC 1 cut(s) 559
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.