Rmu_sc0000928.1_g000001

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000928.1
OG0019693
Physical Location & Seq
Forward (+)
262 .. 867
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000928.1_g000001.1.cds

Sequence Viewer

Length: 606 bp
atgtctagctctgaaaaaaactatattgcgtgtagagtgtgtgacagtgtgttcctgagcaccaaagccctcataaaccacttagatactcacctggtgcatgaggaagatgccgcaagaatcaggaaacatcttcagattagtcacctcatgtctttccaaagttctaatctattttcaaaccctctgatccaacctggtccagctactactgctcttcctttccacccctcaccacaaatccagccatattttgaccacagcaggcagttctactcatcagttcaagcgccaccagtgccatatttacagagaaacccatttgatgttccaccaaatccaaatccaaatccaaatccaaatccaaatccataccctagtccacagacttattctctaccggcaagagatttgcacgccggatttggatctggatttggggcacactctttgttaccttcccagcaaacgtcacagcttatggtggcaacggaggattctcgtgatttaaggccgtttctgagtctcttggattatcctattccgcaaatgaatatcaattgtaacggaaactcagatgagttggatttgaccttgaaactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

201

Amino Acids

22.41

Weight (kDa)

6.1

Isoelectric Point (pI)

68.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03860
prunus_persica Prupe.1G040800_v2.0.a1
rosa_laevigata RLG00000009735
rosa_multiflora Rmu_sc0000928.1_g000001
rosa_roxburghii Rroxscaffold_5G00338880
rosa_rugosa Rorug03G0371400
rosa_samantha Rh4DG045800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 114, 545
AclWI GGATC 2 cut(s) 184, 436
AcuI CTGAAG 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 180, 287, 598
AjnI CCWGG 2 cut(s) 93, 196
AluBI AGCT 3 cut(s) 9, 206, 478
AluI AGCT 3 cut(s) 9, 206, 478
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 2 cut(s) 184, 436
AoxI GGCC 1 cut(s) 512
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 83, 137, 225
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 445
BauI CACGAG 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 95, 198
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 6, 378
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 95, 198
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 95, 198
BmsI GCATC 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 427
BseBI CCWGG 2 cut(s) 95, 198
BseJI GATNNNNATC 1 cut(s) 427
BseMII CTCAG 3 cut(s) 47, 512, 588
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 445
BseYI CCCAGC 1 cut(s) 462
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 401, 420
BsmAI GTCTC 1 cut(s) 530
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 62, 445
Bsp143I GATC 2 cut(s) 189, 428
BspACI CCGC 2 cut(s) 114, 545
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 3 cut(s) 48, 513, 587
BspPI GGATC 2 cut(s) 184, 436
BspQI GCTCTTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 2 cut(s) 189, 428
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 95, 198
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 266, 417
BstDEI CTNAG 4 cut(s) 56, 82, 521, 574
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 2 cut(s) 192, 431
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 2 cut(s) 189, 428
BstMWI GCNNNNNNNGC 2 cut(s) 212, 298
BstNI CCWGG 2 cut(s) 95, 198
BstSCI CCNGG 2 cut(s) 93, 196
BstSLI GKGCMC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 52, 303
Cac8I GCNNGC 2 cut(s) 266, 417
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 200
CsiI ACCWGGT 2 cut(s) 93, 196
CviAII CATG 2 cut(s) 101, 151
CviJI RGCY 6 cut(s) 9, 68, 206, 247, 478, 514
CviKI_1 RGCY 6 cut(s) 9, 68, 206, 247, 478, 514
DdeI CTNAG 4 cut(s) 56, 82, 521, 574
DpnI GATC 2 cut(s) 191, 430
DpnII GATC 2 cut(s) 189, 428
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 93, 196
FaeI CATG 2 cut(s) 104, 154
FaiI YATR 8 cut(s) 24, 74, 102, 152, 250, 304, 373, 482
FatI CATG 2 cut(s) 100, 150
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 6, 378
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 466
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 1 cut(s) 514
HapII CCGG 2 cut(s) 401, 420
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 104, 154
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 3 cut(s) 120, 497, 523
HpaII CCGG 2 cut(s) 401, 420
HphI GGTGA 3 cut(s) 83, 137, 225
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 5 cut(s) 13, 138, 189, 522, 577
Hpy188III TCNNGA 4 cut(s) 55, 124, 432, 503
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 100, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 298
HpyF3I CTNAG 4 cut(s) 56, 82, 521, 574
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 104, 154
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 189, 428
LguI GCTCTTC 1 cut(s) 222
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 2 cut(s) 93, 196
MaeI CTAG 2 cut(s) 6, 378
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 5 cut(s) 41, 143, 453, 471, 563
MalI GATC 2 cut(s) 191, 430
MboI GATC 2 cut(s) 189, 428
MboII GAAGA 3 cut(s) 119, 125, 209
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 62, 445
MluCI AATT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 217, 564
MnlI CCTC 6 cut(s) 80, 97, 158, 195, 241, 487
MseI TTAA 1 cut(s) 509
MspI CCGG 2 cut(s) 401, 420
MspR9I CCNGG 2 cut(s) 95, 198
MunI CAATTG 1 cut(s) 559
MvaI CCWGG 2 cut(s) 95, 198
MwoI GCNNNNNNNGC 2 cut(s) 212, 298
NdeII GATC 2 cut(s) 189, 428
NlaIII CATG 2 cut(s) 104, 154
NmuCI GTSAC 3 cut(s) 41, 143, 471
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 120, 497
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 93, 196
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 2 cut(s) 93, 196
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 189, 428
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 2 cut(s) 95, 198
SduI GDGCHC 2 cut(s) 62, 445
SetI ASST 9 cut(s) 11, 96, 150, 199, 208, 460, 473, 480, 596
SexAI ACCWGGT 2 cut(s) 93, 196
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 1 cut(s) 200
Sse9I AATT 1 cut(s) 559
SsiI CCGC 2 cut(s) 114, 545
SspMI CTAG 2 cut(s) 6, 378
StyD4I CCNGG 2 cut(s) 93, 196
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 473
TasI AATT 1 cut(s) 559
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 120, 497
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 52, 303
TseFI GTSAC 3 cut(s) 41, 143, 471
Tsp45I GTSAC 3 cut(s) 41, 143, 471
TspDTI ATGAA 1 cut(s) 566
TspGWI ACGGA 2 cut(s) 506, 582
TspRI CASTG 2 cut(s) 52, 303
VpaK11BI GGWCC 1 cut(s) 200
XspI CTAG 2 cut(s) 6, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.