Rroxscaffold_5G00338880

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019693
Physical Location & Seq
Forward (+)
7130034 .. 7130573
540 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00338880.1

Sequence Viewer

Length: 540 bp
ATGAACCACTTAGATACTCACTTGGTGCATGAAGAAGATGCCGCAAGAATCAGGAAACATCTTCAGATTAGTCACCTCATGTCTTTTCAAAGTTCTAATCTATTTTCAAACCCTCTGATCCAACCTGGTCCAGCTACTACTGCTCTTCCTTTCCACCCCTCACCACAAATCCAGACATATTTCGACCACAGCAGGCAGTTCTACTCAGCAGTTCAAGCGCCACCAGTGCCATATTTACAGAGAAACCCATTTGATGTTCCACCAAATCCAAATCCAAATCCAAACCCACATCCAAATCCAAATCCATACCCTAATCCACAGACGTATACTCCACCGGCAAGAGATTTGCACGCCGGATTTGGATCTGGATTTGGGGCACACTCTTTGTTACCTTCCCAGAAAACGTCACAGCTTATGGTGGCAACGGAGGATTCTCGTGATTTAAGGCCGTTTCTGAGTCTCTTGGATTATCCTATTCCGCAAATGAATATCAATTGTAACGGAAACTCAGATGAGTTGGATTTGACCTTGAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

6.16

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03860
prunus_persica Prupe.1G040800_v2.0.a1
rosa_laevigata RLG00000009735
rosa_multiflora Rmu_sc0000928.1_g000001
rosa_roxburghii Rroxscaffold_5G00338880
rosa_rugosa Rorug03G0371400
rosa_samantha Rh4DG045800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 42, 479
AclWI GGATC 2 cut(s) 112, 370
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 25
AgsI TTSAA 4 cut(s) 89, 108, 215, 532
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 2 cut(s) 134, 412
AluI AGCT 2 cut(s) 134, 412
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 112, 370
AoxI GGCC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 65, 153
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 379
BauI CACGAG 1 cut(s) 435
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 464
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 361
BseMII CTCAG 3 cut(s) 219, 446, 522
BseNI ACTGG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 379
BshFI GGCC 1 cut(s) 448
BsiSI CCGG 2 cut(s) 335, 354
BsmAI GTCTC 1 cut(s) 464
BsnI GGCC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 117, 362
BspACI CCGC 2 cut(s) 42, 479
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 3 cut(s) 218, 447, 521
BspPI GGATC 2 cut(s) 112, 370
BspQI GCTCTTC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 334
BssMI GATC 2 cut(s) 117, 362
BssNAI GTATAC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 435
Bst1107I GTATAC 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 194, 351
BstDEI CTNAG 4 cut(s) 10, 205, 455, 508
BstF5I GGATG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 120, 365
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 2 cut(s) 117, 362
BstMWI GCNNNNNNNGC 3 cut(s) 140, 215, 226
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 194, 351
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 124
CviAII CATG 2 cut(s) 29, 79
CviJI RGCY 3 cut(s) 134, 412, 448
CviKI_1 RGCY 3 cut(s) 134, 412, 448
DdeI CTNAG 4 cut(s) 10, 205, 455, 508
DpnI GATC 2 cut(s) 119, 364
DpnII GATC 2 cut(s) 117, 362
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 32, 82
FaiI YATR 7 cut(s) 30, 80, 178, 232, 307, 327, 416
FatI CATG 2 cut(s) 28, 78
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 448
HapII CCGG 2 cut(s) 335, 354
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 32, 82
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 3 cut(s) 48, 431, 457
HpaII CCGG 2 cut(s) 335, 354
HphI GGTGA 2 cut(s) 65, 153
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 4 cut(s) 66, 117, 456, 511
Hpy188III TCNNGA 4 cut(s) 52, 172, 366, 437
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 402
HpyCH4IV ACGT 2 cut(s) 323, 404
HpyCH4V TGCA 2 cut(s) 28, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 215, 226
HpyF3I CTNAG 4 cut(s) 10, 205, 455, 508
HpySE526I ACGT 2 cut(s) 323, 404
Hsp92II CATG 2 cut(s) 32, 82
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 117, 362
LguI GCTCTTC 1 cut(s) 150
LweI GCATC 1 cut(s) 28
MabI ACCWGGT 1 cut(s) 124
MaeII ACGT 2 cut(s) 323, 404
MaeIII GTNAC 4 cut(s) 71, 387, 405, 497
MalI GATC 2 cut(s) 119, 364
MboI GATC 2 cut(s) 117, 362
MboII GAAGA 4 cut(s) 44, 47, 53, 137
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 493
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 2 cut(s) 145, 498
MnlI CCTC 4 cut(s) 86, 123, 169, 421
MseI TTAA 1 cut(s) 443
MspI CCGG 2 cut(s) 335, 354
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 140, 215, 226
NdeII GATC 2 cut(s) 117, 362
NlaIII CATG 2 cut(s) 32, 82
NmuCI GTSAC 2 cut(s) 71, 405
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 48, 431
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 117, 362
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 379
SetI ASST 8 cut(s) 78, 127, 136, 326, 394, 407, 414, 530
SexAI ACCWGGT 1 cut(s) 124
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 128
Sse9I AATT 1 cut(s) 493
SsiI CCGC 2 cut(s) 42, 479
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 2 cut(s) 326, 407
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 493
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 48, 431
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 71, 405
Tsp45I GTSAC 2 cut(s) 71, 405
TspDTI ATGAA 3 cut(s) 17, 45, 500
TspGWI ACGGA 2 cut(s) 440, 516
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.