Prupe.1G046300_v2.0.a1

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017281
Physical Location & Seq
Reverse (-)
3290222 .. 3291088
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G046300.1

Sequence Viewer

Length: 867 bp
ATGGCATCACTAGCAACCCATTTCTCAGCGTTCGTGTTGCTCTTTCCCGTAGGCCTACGTCGCCTACTCTGCTCCTCCTCTCTCTACCTCAAGAACCCATCTCTCTACCGATCCAAAATCTGGTATTTCTCAGAACCCAAATGGAAAAACTTTGATTTGTACACTCTCACCATAGCCCTCCCCATTGCTTCCTTCTCCGAAATTTTTATCTTTTTGGCCTTTTCGGGCCACCCCACGTATCGTTTCGCGTTTTTCCAGCAATCAGCAGCCATTTTCTTGTTCTGGGCACTCGTCATTTTGATCATCTGCCGTGAAAACATTGACACTTTGCATATCGATGAAGGGTTCGTCTTCGTTATCGCAGCCATTTCGTTCCTGGTCGAGTATTCGGTGATCGGCAAGGGAATTTCGGGTCTTGGTGGAGCTATGTATGATATATTAGGTACATTGACCCTTGTTTGTGCTGTTTGTTCCTTGTATTTATCAATTAGGCCCTGTTCGTTTTGCGCCGAGTTTTTCTTGTCCTCTGGATTGGTCTTAAAGGGCACTTGGATTTTGCAACTTGGATTGTCCTTGTACACTGATGCATTTGGATTAAAAGGGTGCAAGAAAATGTCAGTTTGGCCAAACCAGGAGAATGCTGAGTGGAAATGTGATCTTGAGGAGGATGGTTTGAGGGGTGTTTCTTTGATGACGCTGCTGTTCATTGGGCATGCAATTGCAGTCTTGCTATTGAGTTTGATGTTGTTTGCTTTGGTGGCAAGTAACTGGAATTTGAGGTGTGGTGAGGCCAGTGGCCCGTTGCTAGCGCAGCTTGATTCGGGGCATGTGTTGATGCCTTCTAGCCTCGACCTCGATATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

289

Amino Acids

31.97

Weight (kDa)

5.74

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04390
malus_domestica MD13G1219500.v1.1 MD16G1225000.v1.1
prunus_persica Prupe.1G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0394961
rosa_laevigata RLG00000009655
rosa_multiflora Rmu_sc0005802.1_g000027
rosa_roxburghii Rroxscaffold_5G00339930
rosa_rugosa Rorug03G0360800.1
rosa_samantha Rh4BG054700 Rh4CG060600 Rh4DG052000
rosa_wichuraiana Rw4G004470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AccII CGCG 1 cut(s) 248
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 3 cut(s) 201, 405, 772
AfaI GTAC 3 cut(s) 161, 445, 578
AfiI CCNNNNNNNGG 2 cut(s) 120, 859
AjnI CCWGG 2 cut(s) 375, 630
AluBI AGCT 2 cut(s) 425, 814
AluI AGCT 2 cut(s) 425, 814
AlwI GGATC 1 cut(s) 105
AoxI GGCC 7 cut(s) 52, 216, 226, 491, 623, 789, 796
ApeKI GCWGC 4 cut(s) 266, 362, 697, 811
ApoI RAATTY 3 cut(s) 201, 405, 772
AspLEI GCGC 2 cut(s) 509, 811
AspS9I GGNCC 3 cut(s) 226, 492, 797
AsuHPI GGTGA 3 cut(s) 160, 403, 797
AsuNHI GCTAGC 1 cut(s) 805
BaeGI GKGCMC 2 cut(s) 289, 548
BalI TGGCCA 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 343
BbvI GCAGC 4 cut(s) 278, 374, 684, 823
BccI CCATC 2 cut(s) 106, 662
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BciT130I CCWGG 2 cut(s) 377, 632
BclI TGATCA 1 cut(s) 300
BfaI CTAG 3 cut(s) 11, 806, 843
BisI GCNGC 4 cut(s) 267, 363, 698, 812
BlsI GCNGC 4 cut(s) 268, 364, 699, 813
Bme1390I CCNGG 2 cut(s) 377, 632
BmgT120I GGNCC 3 cut(s) 226, 492, 797
BmrFI CCNGG 2 cut(s) 377, 632
BmsI GCATC 3 cut(s) 14, 574, 825
BmtI GCTAGC 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 343
BpuEI CTTGAG 2 cut(s) 74, 680
Bsa29I ATCGAT 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 859
Bse1I ACTGG 2 cut(s) 773, 792
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 377, 632
BseCI ATCGAT 1 cut(s) 336
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 120, 859
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 39, 144, 633
BseNI ACTGG 2 cut(s) 773, 792
BseRI GAGGAG 3 cut(s) 64, 67, 677
BseSI GKGCMC 2 cut(s) 289, 548
BseXI GCAGC 4 cut(s) 278, 374, 684, 823
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 7 cut(s) 54, 218, 228, 493, 625, 791, 798
BshVI ATCGAT 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 120, 859
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 7 cut(s) 54, 218, 228, 493, 625, 791, 798
Bsp1286I GDGCHC 2 cut(s) 289, 548
Bsp1407I TGTACA 2 cut(s) 159, 576
Bsp143I GATC 4 cut(s) 110, 300, 393, 655
BspANI GGCC 7 cut(s) 54, 218, 228, 493, 625, 791, 798
BspCNI CTCAG 3 cut(s) 38, 143, 634
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 248
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 183
BsrGI TGTACA 2 cut(s) 159, 576
BsrI ACTGG 2 cut(s) 773, 792
BssMI GATC 4 cut(s) 110, 300, 393, 655
Bst2UI CCWGG 2 cut(s) 377, 632
BstAUI TGTACA 2 cut(s) 159, 576
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 714, 807
BstDEI CTNAG 3 cut(s) 25, 130, 642
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 509, 811
BstKTI GATC 4 cut(s) 113, 303, 396, 658
BstMBI GATC 4 cut(s) 110, 300, 393, 655
BstMWI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 758, 811
BstNI CCWGG 2 cut(s) 377, 632
BstNSI RCATGY 2 cut(s) 716, 830
BstSCI CCNGG 2 cut(s) 375, 630
BstSLI GKGCMC 2 cut(s) 289, 548
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 4 cut(s) 278, 374, 684, 823
BstV2I GAAGAC 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 7 cut(s) 54, 218, 228, 493, 625, 791, 798
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 579, 799
Cac8I GCNNGC 2 cut(s) 714, 807
CfoI GCGC 2 cut(s) 509, 811
Cfr13I GGNCC 3 cut(s) 226, 492, 797
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 703
Csp6I GTAC 3 cut(s) 160, 444, 577
CviAII CATG 2 cut(s) 713, 827
CviQI GTAC 3 cut(s) 160, 444, 577
DdeI CTNAG 3 cut(s) 25, 130, 642
DpnI GATC 4 cut(s) 112, 302, 395, 657
DpnII GATC 4 cut(s) 110, 300, 393, 655
EaeI YGGCCR 1 cut(s) 623
Eco147I AGGCCT 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 375, 630
EcoT22I ATGCAT 1 cut(s) 589
FaeI CATG 2 cut(s) 716, 830
FaiI YATR 8 cut(s) 173, 333, 428, 432, 437, 714, 828, 860
FatI CATG 2 cut(s) 712, 826
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 267, 363, 698, 812
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 4 cut(s) 267, 363, 698, 812
FspBI CTAG 3 cut(s) 11, 806, 843
GlaI GCGC 2 cut(s) 508, 810
GluI GCNGC 4 cut(s) 267, 363, 698, 812
HaeIII GGCC 7 cut(s) 54, 218, 228, 493, 625, 791, 798
HgaI GACGC 1 cut(s) 703
HhaI GCGC 2 cut(s) 509, 811
Hin1II CATG 2 cut(s) 716, 830
Hin6I GCGC 2 cut(s) 507, 809
HinP1I GCGC 2 cut(s) 507, 809
HinfI GANTC 1 cut(s) 818
HphI GGTGA 3 cut(s) 160, 403, 797
Hpy166II GTNNAC 2 cut(s) 162, 579
Hpy188I TCNGA 2 cut(s) 133, 199
Hpy188III TCNNGA 3 cut(s) 91, 528, 659
Hpy8I GTNNAC 2 cut(s) 162, 579
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 202, 335, 849
HpyCH4IV ACGT 2 cut(s) 58, 236
HpyCH4V TGCA 6 cut(s) 331, 559, 587, 606, 716, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 758, 811
HpyF3I CTNAG 3 cut(s) 25, 130, 642
HpySE526I ACGT 2 cut(s) 58, 236
Hsp92II CATG 2 cut(s) 716, 830
HspAI GCGC 2 cut(s) 507, 809
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 4 cut(s) 110, 300, 393, 655
LmnI GCTCC 2 cut(s) 77, 422
Lsp1109I GCAGC 4 cut(s) 278, 374, 684, 823
LweI GCATC 3 cut(s) 14, 574, 825
MaeI CTAG 3 cut(s) 11, 806, 843
MaeII ACGT 2 cut(s) 58, 236
MaeIII GTNAC 1 cut(s) 764
MalI GATC 4 cut(s) 112, 302, 395, 657
MboI GATC 4 cut(s) 110, 300, 393, 655
MboII GAAGA 1 cut(s) 343
MfeI CAATTG 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 289, 548
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 5 cut(s) 201, 405, 486, 717, 772
MluNI TGGCCA 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 589
MscI TGGCCA 1 cut(s) 625
MseI TTAA 2 cut(s) 539, 596
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 625
MspR9I CCNGG 2 cut(s) 377, 632
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 377, 632
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 758, 811
NdeII GATC 4 cut(s) 110, 300, 393, 655
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 2 cut(s) 716, 830
NmeAIII GCCGAG 1 cut(s) 535
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 2 cut(s) 716, 830
PaeI GCATGC 1 cut(s) 716
PceI AGGCCT 1 cut(s) 54
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 1 cut(s) 818
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 4 cut(s) 268, 364, 699, 813
Ppu21I YACGTR 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 375, 630
PspGI CCWGG 2 cut(s) 375, 630
PspPI GGNCC 3 cut(s) 226, 492, 797
RsaI GTAC 3 cut(s) 161, 445, 578
RsaNI GTAC 3 cut(s) 160, 444, 577
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 539, 596
SatI GCNGC 4 cut(s) 267, 363, 698, 812
Sau3AI GATC 4 cut(s) 110, 300, 393, 655
Sau96I GGNCC 3 cut(s) 226, 492, 797
ScrFI CCNGG 2 cut(s) 377, 632
SduI GDGCHC 2 cut(s) 289, 548
SetI ASST 8 cut(s) 61, 90, 239, 427, 445, 782, 816, 855
SfaNI GCATC 3 cut(s) 14, 574, 825
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 89, 659
SmoI CTYRAG 2 cut(s) 89, 659
SphI GCATGC 1 cut(s) 716
Sse9I AATT 5 cut(s) 201, 405, 486, 717, 772
SseBI AGGCCT 1 cut(s) 54
SspMI CTAG 3 cut(s) 11, 806, 843
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 375, 630
TaiI ACGT 2 cut(s) 61, 239
TaqI TCGA 4 cut(s) 336, 381, 849, 855
TasI AATT 5 cut(s) 201, 405, 486, 717, 772
TatI WGTACW 2 cut(s) 159, 576
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 2 cut(s) 539, 596
Tru9I TTAA 2 cut(s) 539, 596
TscAI CASTG 2 cut(s) 586, 799
TseI GCWGC 4 cut(s) 266, 362, 697, 811
TspDTI ATGAA 2 cut(s) 354, 694
TspRI CASTG 2 cut(s) 586, 799
Van91I CCANNNNNTGG 1 cut(s) 120
XapI RAATTY 3 cut(s) 201, 405, 772
XceI RCATGY 2 cut(s) 716, 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XspI CTAG 3 cut(s) 11, 806, 843
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.