Prupe.1G071300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018127
Physical Location & Seq
Reverse (-)
5047466 .. 5048600
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G071300.1

Sequence Viewer

Length: 396 bp
ATGAGATTTCTTTCCCAACCCAAAATGGGTTTTGCAACACCACCAGAAGAAGAAGATCAGTTCCGGCCAATTACGCCAATAAGAGTTGTGGTTCCAAAACTACGACCTTTAAACAACGCAAAGGAGGATGAGGACGAGGACGAGGAGCTTTTGCTTTTGGAAGGTGACGTCCATGAACATGAAGAGTGCCACACACCCAAGTCGCCTGCAGCTCACGTGACCTTCAAGCAACCGCCGGTGTGTCCACCAGCACCGAAGAAACCAACCCAAGCTAGAAGAAAACTGAGGCCACGGCCTTCACAAGGGTTTTTTAAGGTTCCAGACGATCTTACTTCGGTGTTTATGGCAATCTCTAGCTCTTCTAATCCTGCCAAGAAGAAGATGAGAGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.81

Weight (kDa)

8.6

Isoelectric Point (pI)

75.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018127)

Species Orthologous Gene IDs
prunus_persica Prupe.1G071300_v2.0.a1
pyrus_communis pycom08g08590 pycom13g21140
rosa_chinensis RchiOBHm_Chr4g0398731
rosa_laevigata RLG00000009327
rosa_roxburghii Rroxscaffold_5G00343680
rosa_rugosa Rorug04G0011200
rosa_samantha Rh4AG089000 Rh4BG085900 Rh4CG097000 Rh4DG080600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AciI CCGC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 65
AcvI CACGTG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 26, 302
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 4 cut(s) 148, 212, 272, 357
AluI AGCT 4 cut(s) 148, 212, 272, 357
AoxI GGCC 3 cut(s) 65, 287, 293
ApeKI GCWGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 176
BbrPI CACGTG 1 cut(s) 217
BbvI GCAGC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 308
BfaI CTAG 2 cut(s) 273, 354
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 93, 318
BsaAI YACGTR 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 302
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 26, 302
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 3 cut(s) 67, 289, 295
BsiSI CCGG 2 cut(s) 64, 236
BslI CCNNNNNNNGG 2 cut(s) 26, 302
BsnI GGCC 3 cut(s) 67, 289, 295
Bsp143I GATC 2 cut(s) 55, 325
BspACI CCGC 1 cut(s) 233
BspANI GGCC 3 cut(s) 67, 289, 295
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 93, 318
BspMAI CTGCAG 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 55, 325
BssNI GRCGYC 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 177, 364
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 2 cut(s) 58, 328
BstMBI GATC 2 cut(s) 55, 325
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 221
BsuRI GGCC 3 cut(s) 67, 289, 295
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 235
CviAII CATG 2 cut(s) 173, 179
CviJI RGCY 8 cut(s) 67, 148, 212, 272, 289, 295, 357, 389
CviKI_1 RGCY 8 cut(s) 67, 148, 212, 272, 289, 295, 357, 389
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 57, 327
DpnII GATC 2 cut(s) 55, 325
DraI TTTAAA 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 177, 364
EarI CTCTTC 2 cut(s) 177, 364
Eco72I CACGTG 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 300
FaeI CATG 2 cut(s) 176, 182
FaiI YATR 3 cut(s) 174, 180, 344
FatI CATG 2 cut(s) 172, 178
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 273, 354
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 3 cut(s) 67, 289, 295
HapII CCGG 2 cut(s) 64, 236
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 176, 182
HpaII CCGG 2 cut(s) 64, 236
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 245
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 155, 232, 306
HpyCH4IV ACGT 2 cut(s) 168, 216
HpyCH4V TGCA 2 cut(s) 35, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 2 cut(s) 168, 216
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 176, 182
Kzo9I GATC 2 cut(s) 55, 325
LguI GCTCTTC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 57, 77, 219, 249, 261, 333, 381
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 2 cut(s) 273, 354
MaeII ACGT 2 cut(s) 168, 216
MaeIII GTNAC 2 cut(s) 164, 217
MalI GATC 2 cut(s) 57, 327
MboI GATC 2 cut(s) 55, 325
MboII GAAGA 9 cut(s) 59, 62, 65, 194, 268, 288, 351, 388, 391
MluCI AATT 1 cut(s) 69
MnlI CCTC 5 cut(s) 118, 124, 130, 136, 279
MseI TTAA 3 cut(s) 110, 312, 394
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 64, 236
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 2 cut(s) 55, 325
NlaIII CATG 2 cut(s) 176, 182
NlaIV GGNNCC 2 cut(s) 93, 318
NmuCI GTSAC 2 cut(s) 164, 217
PciSI GCTCTTC 1 cut(s) 364
PkrI GCNGC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 217
PspCI CACGTG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 93, 318
PstI CTGCAG 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 364
SaqAI TTAA 3 cut(s) 110, 312, 394
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 55, 325
SfcI CTRYAG 1 cut(s) 207
SgrAI CRCCGGYG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 1 cut(s) 69
SsiI CCGC 1 cut(s) 233
SspMI CTAG 2 cut(s) 273, 354
TaiI ACGT 2 cut(s) 171, 219
TasI AATT 1 cut(s) 69
Tru1I TTAA 3 cut(s) 110, 312, 394
Tru9I TTAA 3 cut(s) 110, 312, 394
TseFI GTSAC 2 cut(s) 164, 217
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 2 cut(s) 164, 217
TspDTI ATGAA 2 cut(s) 189, 195
XagI CCTNNNNNAGG 1 cut(s) 300
XspI CTAG 2 cut(s) 273, 354
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.