Rh4BG085900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018127
Physical Location & Seq
Reverse (-)
14772891 .. 14773196
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG085900.1

Sequence Viewer

Length: 306 bp
ATGGGTTTCGAAATCCAAGAAGAATTCAGGCCGATTACTCCAATCCGAGTAGTTCCAGTACAGCATCCAACTGTTAACTCAACAGAAGATGCTCTTGAAGAGTGCCTTACACCCAAGTCACCTGCAGCTCGCATGATCTTGAAGCAGCCGTTGGTGTGTCCACCGGCTCCCAAGAAACCACCCCAACCTAGAAGAAAGTTGAGGTCTCCATCCAAAGAACTTTTTAAGGTTCCAGACGACTTTGCATCGGTGTTGAGGGTGATTAGTACTAGTGCTGCTCCTACCAAGAAGATCAGAGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

9.93

Isoelectric Point (pI)

77.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018127)

Species Orthologous Gene IDs
prunus_persica Prupe.1G071300_v2.0.a1
pyrus_communis pycom08g08590 pycom13g21140
rosa_chinensis RchiOBHm_Chr4g0398731
rosa_laevigata RLG00000009327
rosa_roxburghii Rroxscaffold_5G00343680
rosa_rugosa Rorug04G0011200
rosa_samantha Rh4AG089000 Rh4BG085900 Rh4CG097000 Rh4DG080600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 2 cut(s) 60, 268
AgsI TTSAA 2 cut(s) 98, 142
AhlI ACTAGT 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 210
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 125, 145, 275
ApoI RAATTY 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 111, 271
AsuII TTCGAA 1 cut(s) 9
BbvI GCAGC 3 cut(s) 137, 157, 262
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 189, 270
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 3 cut(s) 126, 146, 276
BlsI GCNGC 3 cut(s) 127, 147, 277
BmcAI AGTACT 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 168, 231
BmsI GCATC 3 cut(s) 73, 79, 254
Bpu14I TTCGAA 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 56, 300
BseGI GGATG 2 cut(s) 64, 209
BseNI ACTGG 2 cut(s) 56, 300
BseXI GCAGC 3 cut(s) 137, 157, 262
BshFI GGCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 135, 291
BspANI GGCC 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 168, 231
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 56, 300
BssAI RCCGGY 1 cut(s) 163
BssMI GATC 2 cut(s) 135, 291
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 2 cut(s) 64, 209
BstKTI GATC 2 cut(s) 138, 294
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 135, 291
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 137, 157, 262
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 64, 209
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 163
Csp6I GTAC 2 cut(s) 59, 267
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 31, 128, 148, 167, 299
CviKI_1 RGCY 5 cut(s) 31, 128, 148, 167, 299
CviQI GTAC 2 cut(s) 59, 267
DpnI GATC 2 cut(s) 137, 293
DpnII GATC 2 cut(s) 135, 291
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 23
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 90, 122
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 126, 146, 276
FokI GGATG 2 cut(s) 51, 196
Fsp4HI GCNGC 3 cut(s) 126, 146, 276
FspBI CTAG 2 cut(s) 189, 270
GluI GCNGC 3 cut(s) 126, 146, 276
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 164
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 111, 271
Hpy166II GTNNAC 2 cut(s) 76, 161
Hpy188I TCNGA 2 cut(s) 47, 296
Hpy188III TCNNGA 3 cut(s) 95, 139, 233
Hpy8I GTNNAC 2 cut(s) 76, 161
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 125, 245
Hsp92II CATG 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 135, 291
LmnI GCTCC 2 cut(s) 172, 283
LpnPI CCDG 5 cut(s) 13, 69, 135, 177, 246
Lsp1109I GCAGC 3 cut(s) 137, 157, 262
LweI GCATC 3 cut(s) 73, 79, 254
MaeI CTAG 2 cut(s) 189, 270
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 137, 293
MboI GATC 2 cut(s) 135, 291
MboII GAAGA 5 cut(s) 32, 98, 110, 204, 301
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 195, 249
MseI TTAA 3 cut(s) 75, 225, 304
MspI CCGG 1 cut(s) 164
NdeII GATC 2 cut(s) 135, 291
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 168, 231
NmuCI GTSAC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 127, 147, 277
PspN4I GGNNCC 2 cut(s) 168, 231
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 2 cut(s) 60, 268
RsaNI GTAC 2 cut(s) 59, 267
SaqAI TTAA 3 cut(s) 75, 225, 304
SatI GCNGC 3 cut(s) 126, 146, 276
Sau3AI GATC 2 cut(s) 135, 291
ScaI AGTACT 1 cut(s) 268
SetI ASST 5 cut(s) 124, 130, 190, 206, 231
SfaNI GCATC 3 cut(s) 73, 79, 254
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 1 cut(s) 23
SspMI CTAG 2 cut(s) 189, 270
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 23
TatI WGTACW 2 cut(s) 58, 266
Tru1I TTAA 3 cut(s) 75, 225, 304
Tru9I TTAA 3 cut(s) 75, 225, 304
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 3 cut(s) 125, 145, 275
Tsp45I GTSAC 1 cut(s) 117
XapI RAATTY 1 cut(s) 23
XspI CTAG 2 cut(s) 189, 270
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.