RLG00000009327

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018127
Physical Location & Seq
Forward (+)
51117114 .. 51117585
472 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009327

Sequence Viewer

Length: 306 bp
ATGGGTTTCGAAATCCAAGAAGAATTCAGGCCAATTACTCCAATCCGAGTAGTTCCAGTTCACCATCCAACTGTAAACTCAACAGAAGATGCTCTTGAAGAGTGCCTTACACCCAAGTCACCTGCAGCTCGCGTGATCTTGAAGCAGCCGCTGGTGTGTCCACCAGCTCCCAAGAAACCACCCCAACCTAGAAGAAAGTTGAGGTCTCCATCCAAAGAACTTTTTAAGGTTCCAGACGACTTTGCATCAGTGTTGAGGGTGATTAGTACTAGTGCTGCTCCTACCAAGAAGATCAGAGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

9.93

Isoelectric Point (pI)

77.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018127)

Species Orthologous Gene IDs
prunus_persica Prupe.1G071300_v2.0.a1
pyrus_communis pycom08g08590 pycom13g21140
rosa_chinensis RchiOBHm_Chr4g0398731
rosa_laevigata RLG00000009327
rosa_roxburghii Rroxscaffold_5G00343680
rosa_rugosa Rorug04G0011200
rosa_samantha Rh4AG089000 Rh4BG085900 Rh4CG097000 Rh4DG080600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 98, 142
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 2 cut(s) 128, 167
AluI AGCT 2 cut(s) 128, 167
Alw26I GTCTC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 125, 145, 275
ApoI RAATTY 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 53, 111, 271
AsuII TTCGAA 1 cut(s) 9
BbvI GCAGC 3 cut(s) 137, 157, 262
BccI CCATC 2 cut(s) 72, 217
BcoDI GTCTC 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 189, 270
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 126, 146, 149, 276
BlsI GCNGC 4 cut(s) 127, 147, 150, 277
BmcAI AGTACT 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 79, 254
Bpu14I TTCGAA 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 56, 300
BseGI GGATG 2 cut(s) 64, 209
BseNI ACTGG 2 cut(s) 56, 300
BseXI GCAGC 3 cut(s) 137, 157, 262
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 135, 291
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 31
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 2 cut(s) 56, 300
BssMI GATC 2 cut(s) 135, 291
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 2 cut(s) 64, 209
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 2 cut(s) 138, 294
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 135, 291
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 137, 157, 262
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 64, 209
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 267
CviJI RGCY 5 cut(s) 31, 128, 148, 167, 299
CviKI_1 RGCY 5 cut(s) 31, 128, 148, 167, 299
CviQI GTAC 1 cut(s) 267
DpnI GATC 2 cut(s) 137, 293
DpnII GATC 2 cut(s) 135, 291
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 23
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 90, 122
Fnu4HI GCNGC 4 cut(s) 126, 146, 149, 276
FokI GGATG 2 cut(s) 51, 196
Fsp4HI GCNGC 4 cut(s) 126, 146, 149, 276
FspBI CTAG 2 cut(s) 189, 270
GluI GCNGC 4 cut(s) 126, 146, 149, 276
HaeIII GGCC 1 cut(s) 31
HphI GGTGA 3 cut(s) 53, 111, 271
Hpy166II GTNNAC 3 cut(s) 61, 76, 161
Hpy188I TCNGA 2 cut(s) 47, 296
Hpy188III TCNNGA 3 cut(s) 95, 139, 233
Hpy8I GTNNAC 3 cut(s) 61, 76, 161
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 125, 245
Kzo9I GATC 2 cut(s) 135, 291
LmnI GCTCC 2 cut(s) 172, 283
LpnPI CCDG 6 cut(s) 13, 69, 135, 137, 177, 246
Lsp1109I GCAGC 3 cut(s) 137, 157, 262
LweI GCATC 2 cut(s) 79, 254
MaeI CTAG 2 cut(s) 189, 270
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 137, 293
MboI GATC 2 cut(s) 135, 291
MboII GAAGA 5 cut(s) 32, 98, 110, 204, 301
MluCI AATT 2 cut(s) 23, 33
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 195, 249
MseI TTAA 2 cut(s) 225, 304
MspA1I CMGCKG 1 cut(s) 151
MvnI CGCG 1 cut(s) 132
NdeII GATC 2 cut(s) 135, 291
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 127, 147, 150, 277
PspN4I GGNNCC 1 cut(s) 231
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 225, 304
SatI GCNGC 4 cut(s) 126, 146, 149, 276
Sau3AI GATC 2 cut(s) 135, 291
ScaI AGTACT 1 cut(s) 268
SetI ASST 6 cut(s) 124, 130, 169, 190, 206, 231
SfaNI GCATC 2 cut(s) 79, 254
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 2 cut(s) 23, 33
SsiI CCGC 1 cut(s) 149
SspMI CTAG 2 cut(s) 189, 270
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 23, 33
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 225, 304
Tru9I TTAA 2 cut(s) 225, 304
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 3 cut(s) 125, 145, 275
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 255
XapI RAATTY 1 cut(s) 23
XspI CTAG 2 cut(s) 189, 270
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.