Rh4DG080600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018127
Physical Location & Seq
Reverse (-)
11978422 .. 11990714
12293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG080600.1

Sequence Viewer

Length: 360 bp
ATGGTGGTCGGTACTCGAATCGACTCGAGGGAAAAAATTTCTTCGGAGGCAAAAATGGGTTTCGAAATCCAAGAAGAATTCAGGCCGATTACTCCAATCCGAGTAGTTCCAGTTCAGCATCCAACTGTAAACTCAACAGAAGGTGCTCTTGAAGAGTGCCTTACACCCAAGTCACCTGCAGCTCGCATGATCTTGAAGCAGCCGTTGGTGTGTCCACCAGCTCCCAAGAAACCACCCCAACCTAGAAGAAAGTTGAGGTCTCCATCCAAAGAACTTTTTAAGGTTCCAGACGACTTTGCATCGGTGTTGAGGGTGATTAGTACTAGTGCTGCTCCTACCAAGAAGATCAGAGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

10.08

Isoelectric Point (pI)

72.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018127)

Species Orthologous Gene IDs
prunus_persica Prupe.1G071300_v2.0.a1
pyrus_communis pycom08g08590 pycom13g21140
rosa_chinensis RchiOBHm_Chr4g0398731
rosa_laevigata RLG00000009327
rosa_roxburghii Rroxscaffold_5G00343680
rosa_rugosa Rorug04G0011200
rosa_samantha Rh4AG089000 Rh4BG085900 Rh4CG097000 Rh4DG080600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 36, 77
AfaI GTAC 2 cut(s) 13, 322
AgsI TTSAA 2 cut(s) 152, 196
AhlI ACTAGT 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 182, 221
AluI AGCT 2 cut(s) 182, 221
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 179, 199, 329
ApoI RAATTY 2 cut(s) 36, 77
AsuHPI GGTGA 2 cut(s) 165, 325
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 191, 211, 316
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 264
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 243, 324
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 3 cut(s) 180, 200, 330
BlsI GCNGC 3 cut(s) 181, 201, 331
BmcAI AGTACT 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 127, 308
Bpu14I TTCGAA 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 110, 354
BseGI GGATG 2 cut(s) 118, 263
BseNI ACTGG 2 cut(s) 110, 354
BseXI GCAGC 3 cut(s) 191, 211, 316
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 189, 345
BspANI GGCC 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 264
BsrI ACTGG 2 cut(s) 110, 354
BssMI GATC 2 cut(s) 189, 345
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 184
BstF5I GGATG 2 cut(s) 118, 263
BstKTI GATC 2 cut(s) 192, 348
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 189, 345
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 191, 211, 316
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 118, 263
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 12, 321
CviAII CATG 1 cut(s) 187
CviJI RGCY 5 cut(s) 85, 182, 202, 221, 353
CviKI_1 RGCY 5 cut(s) 85, 182, 202, 221, 353
CviQI GTAC 2 cut(s) 12, 321
DpnI GATC 2 cut(s) 191, 347
DpnII GATC 2 cut(s) 189, 345
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 77
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 144, 176
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 180, 200, 330
FokI GGATG 2 cut(s) 105, 250
Fsp4HI GCNGC 3 cut(s) 180, 200, 330
FspBI CTAG 2 cut(s) 243, 324
GluI GCNGC 3 cut(s) 180, 200, 330
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 18, 23
HphI GGTGA 2 cut(s) 165, 325
Hpy166II GTNNAC 2 cut(s) 130, 215
Hpy188I TCNGA 3 cut(s) 46, 101, 350
Hpy188III TCNNGA 3 cut(s) 149, 193, 287
Hpy8I GTNNAC 2 cut(s) 130, 215
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 179, 299
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 2 cut(s) 189, 345
LmnI GCTCC 2 cut(s) 226, 337
LpnPI CCDG 5 cut(s) 67, 123, 189, 231, 300
Lsp1109I GCAGC 3 cut(s) 191, 211, 316
LweI GCATC 2 cut(s) 127, 308
MaeI CTAG 2 cut(s) 243, 324
MaeIII GTNAC 1 cut(s) 171
MalI GATC 2 cut(s) 191, 347
MboI GATC 2 cut(s) 189, 345
MboII GAAGA 5 cut(s) 33, 86, 164, 258, 355
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 36, 77
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 21, 40, 249, 303
MseI TTAA 2 cut(s) 279, 358
NdeII GATC 2 cut(s) 189, 345
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 171
NspV TTCGAA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 25
PaqCI CACCTGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 181, 201, 331
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 285
PspXI VCTCGAGB 1 cut(s) 25
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 2 cut(s) 13, 322
RsaNI GTAC 2 cut(s) 12, 321
SaqAI TTAA 2 cut(s) 279, 358
SatI GCNGC 3 cut(s) 180, 200, 330
Sau3AI GATC 2 cut(s) 189, 345
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 1 cut(s) 148
SetI ASST 7 cut(s) 145, 178, 184, 223, 244, 260, 285
SfaNI GCATC 2 cut(s) 127, 308
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 2 cut(s) 36, 77
SspMI CTAG 2 cut(s) 243, 324
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 4 cut(s) 16, 21, 26, 63
TasI AATT 2 cut(s) 36, 77
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 279, 358
Tru9I TTAA 2 cut(s) 279, 358
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 3 cut(s) 179, 199, 329
Tsp45I GTSAC 1 cut(s) 171
XapI RAATTY 2 cut(s) 36, 77
XhoI CTCGAG 1 cut(s) 25
XspI CTAG 2 cut(s) 243, 324
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.