Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0019309

Physical Location & Seq

Genomic Coordinates Reverse (-)

5142476 .. 5144209

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G072200.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGATGAACAGCTTCTCGCAAGAAAACAACGACTTGGAGGCCGGAACTAGGGATATTGCCGTTCAGAGCATCAGCCGTTGGAGGCGAGCAGCAGTTGTGCTATTTGCTTCTCGTCGATTTTTGCAAATCGTATACTTGAAAAAGGAAGGAGAAAAAGAGCAGGCTTCAAGCAAAGTCCATGCACATGCTGCTGTACAAGCTGAACACGCTTTAGCAACAGAGGCTGGAGAAGAAGTGATAGTGAATAATCCACAGAGACGAACCGGTACTACTGGTGATTTTGGAATTGGACGAGAGGAACTTGATGCCTTAATAACTAAGAAGGATGATGTTGGTTGCCTGGAACAATATGGGGGGGCAAGTCCAACACATAACATCATCTTTTATCTTATGGAACGTTGTATATGTTGGAATTTTAAAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

6.09

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019309)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G072200_v2.0.a1
rosa_samantha	Rh4AG085600 Rh4AG090800 Rh4BG088000 Rh4BG088500 Rh4DG083100 Rh4DG083700 Rh5AG265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	415
AfaI	GTAC	2 cut(s)	198, 271
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	142, 171
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	15, 203
AluI	AGCT	2 cut(s)	15, 203
Alw26I	GTCTC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	92, 191
ApoI	RAATTY	1 cut(s)	415
AsiGI	ACCGGT	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	104, 178
BceAI	ACGGC	2 cut(s)	47, 63
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	93, 192
BlsI	GCNGC	2 cut(s)	94, 193
Bme1390I	CCNGG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	81, 298
BpmI	CTGGAG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	104, 178
BshFI	GGCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	45, 267
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	196
BspANI	GGCC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	266
BssNAI	GTATAC	1 cut(s)	136
Bst1107I	GTATAC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	90, 165
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 200, 209, 224
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	104, 178
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	90, 165
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	197, 270
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	2 cut(s)	182, 188
CviJI	RGCY	6 cut(s)	15, 44, 78, 167, 203, 227
CviKI_1	RGCY	6 cut(s)	15, 44, 78, 167, 203, 227
CviQI	GTAC	2 cut(s)	197, 270
DdeI	CTNAG	1 cut(s)	321
DraI	TTTAAA	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	2 cut(s)	185, 191
FaiI	YATR	8 cut(s)	136, 183, 189, 354, 375, 395, 407, 409
FatI	CATG	2 cut(s)	181, 187
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	93, 192
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	93, 192
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	93, 192
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	45, 267
Hin1II	CATG	2 cut(s)	185, 191
HpaII	CCGG	2 cut(s)	45, 267
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	143, 319
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	127, 185
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 200, 209, 224
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	185, 191
LpnPI	CCDG	7 cut(s)	58, 149, 213, 261, 280, 329, 356
Lsp1109I	GCAGC	2 cut(s)	104, 178
LweI	GCATC	2 cut(s)	81, 298
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	400
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	2 cut(s)	288, 415
MmeI	TCCRAC	3 cut(s)	62, 392, 392
MnlI	CCTC	4 cut(s)	34, 78, 217, 292
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	3 cut(s)	314, 420, 430
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	2 cut(s)	45, 267
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	191, 200, 209, 224
NlaIII	CATG	2 cut(s)	185, 191
NspI	RCATGY	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	94, 193
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PsrI	GAACNNNNNNTAC	2 cut(s)	256, 288
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	198, 271
RsaNI	GTAC	2 cut(s)	197, 270
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	314, 420, 430
SatI	GCNGC	2 cut(s)	93, 192
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	4 cut(s)	17, 205, 403, 428
SfaNI	GCATC	2 cut(s)	81, 298
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	288, 415
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	288, 415
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	314, 420, 430
Tru9I	TTAA	3 cut(s)	314, 420, 430
TseI	GCWGC	2 cut(s)	92, 191
TspDTI	ATGAA	1 cut(s)	23
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.