Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019309

Physical Location & Seq

Genomic Coordinates Reverse (-)

12444690 .. 12447018

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG083100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGTCATTCAACGGGCTCGCCGAACCACAAAAACTATGATGAGGAAGCCGGAATCATCCGTTCCGGCGACGACGAGGACTGCTCGAATGTCTTTGAGATTACCAGAACTAAGCATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAGGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATTTCTTTTCAAGGAATCCGTACCACAGGAAAATGGAATTGTGCCACCAAAACGAAGTTCTGCTGGTGAATTTCAAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGCAAGTCTACCAAGGAACCTCTTTTGTTATTTGACTTTGTATATTAATGAGTTTTCTTATTCTTTTGTTGTTTCTTTACATCAGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGGTACAGTTTGTTACTGATTGTGAATTTTTGCAGTTATTGTATGTAAAATTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

9.36

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	31 - 72	3.3e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	166 - 214	2.6e-07	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019309)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G072200_v2.0.a1
rosa_samantha	Rh4AG085600 Rh4AG090800 Rh4BG088000 Rh4BG088500 Rh4DG083100 Rh4DG083700 Rh5AG265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	188, 421
AciI	CCGC	2 cut(s)	136, 152
AclWI	GGATC	3 cut(s)	387, 585, 598
AcsI	RAATTY	3 cut(s)	338, 543, 653
AfaI	GTAC	2 cut(s)	291, 633
AgsI	TTSAA	7 cut(s)	12, 202, 280, 344, 369, 375, 523
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AluBI	AGCT	2 cut(s)	266, 365
AluI	AGCT	2 cut(s)	266, 365
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	387, 585, 598
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	266, 400
ApoI	RAATTY	3 cut(s)	338, 543, 653
AseI	ATTAAT	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	253, 412
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	398
BisI	GCNGC	3 cut(s)	153, 267, 401
BlsI	GCNGC	3 cut(s)	154, 268, 402
Bme1390I	CCNGG	2 cut(s)	549, 607
BmiI	GGNNCC	2 cut(s)	431, 592
BmrFI	CCNGG	2 cut(s)	549, 607
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuMI	CCSGG	1 cut(s)	607
BsaJI	CCNNGG	4 cut(s)	425, 508, 605, 617
BsaWI	WCCGGW	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	4 cut(s)	425, 508, 605, 617
BseGI	GGATG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	253, 412
BshFI	GGCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	51, 66, 184, 607
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	20, 247
Bsp143I	GATC	2 cut(s)	379, 590
BspACI	CCGC	2 cut(s)	136, 152
BspANI	GGCC	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	431, 592
BspMAI	CTGCAG	1 cut(s)	402
BspPI	GGATC	3 cut(s)	387, 585, 598
BssECI	CCNNGG	4 cut(s)	425, 508, 605, 617
BssMI	GATC	2 cut(s)	379, 590
BssNAI	GTATAC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	425, 617
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	636
BstC8I	GCNNGC	3 cut(s)	20, 117, 150
BstDEI	CTNAG	2 cut(s)	111, 193
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	382, 593
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	379, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	119, 251
BstSCI	CCNGG	2 cut(s)	547, 605
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	253, 412
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BstZ17I	GTATAC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	20, 117, 150
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	290, 632
CviAII	CATG	2 cut(s)	116, 248
CviJI	RGCY	7 cut(s)	18, 50, 257, 266, 365, 507, 683
CviKI_1	RGCY	7 cut(s)	18, 50, 257, 266, 365, 507, 683
CviQI	GTAC	2 cut(s)	290, 632
DdeI	CTNAG	2 cut(s)	111, 193
DpnI	GATC	2 cut(s)	381, 592
DpnII	GATC	2 cut(s)	379, 590
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	425, 617
Eco147I	AGGCCT	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	425, 617
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	425, 617
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	2 cut(s)	119, 251
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	2 cut(s)	115, 247
FauNDI	CATATG	1 cut(s)	586
FblI	GTMKAC	2 cut(s)	188, 421
Fnu4HI	GCNGC	3 cut(s)	153, 267, 401
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	153, 267, 401
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	3 cut(s)	153, 267, 401
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	4 cut(s)	51, 66, 184, 607
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	119, 251
HinfI	GANTC	4 cut(s)	4, 54, 180, 284
HpaII	CCGG	4 cut(s)	51, 66, 184, 607
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	189, 422
Hpy188I	TCNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	189, 422
Hpy99I	CGWCG	4 cut(s)	74, 77, 128, 180
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	251, 269, 400, 584, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	111, 193
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	119, 251
Kzo9I	GATC	2 cut(s)	379, 590
Lsp1109I	GCAGC	2 cut(s)	253, 412
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	381, 592
MboI	GATC	2 cut(s)	379, 590
MboII	GAAGA	3 cut(s)	224, 235, 368
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	20, 247
MluCI	AATT	9 cut(s)	306, 338, 345, 369, 385, 515, 543, 653, 677
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	122, 618
MnlI	CCTC	6 cut(s)	37, 70, 138, 202, 443, 518
MseI	TTAA	2 cut(s)	230, 459
MspI	CCGG	4 cut(s)	51, 66, 184, 607
MspR9I	CCNGG	2 cut(s)	549, 607
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	2 cut(s)	379, 590
NlaIII	CATG	2 cut(s)	119, 251
NlaIV	GGNNCC	2 cut(s)	431, 592
NspI	RCATGY	2 cut(s)	119, 251
PaeI	GCATGC	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	3 cut(s)	54, 180, 284
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	154, 268, 402
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	431, 592
PstI	CTGCAG	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	2 cut(s)	291, 633
RsaNI	GTAC	2 cut(s)	290, 632
SaqAI	TTAA	2 cut(s)	230, 459
SatI	GCNGC	3 cut(s)	153, 267, 401
Sau3AI	GATC	2 cut(s)	379, 590
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	549, 607
SduI	GDGCHC	2 cut(s)	20, 247
SetI	ASST	6 cut(s)	194, 230, 268, 367, 435, 501
SfcI	CTRYAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	9 cut(s)	306, 338, 345, 369, 385, 515, 543, 653, 677
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	2 cut(s)	136, 152
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	547, 605
StyI	CCWWGG	2 cut(s)	425, 617
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	86, 126, 178
TasI	AATT	9 cut(s)	306, 338, 345, 369, 385, 515, 543, 653, 677
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	54, 180, 284
Tru1I	TTAA	2 cut(s)	230, 459
Tru9I	TTAA	2 cut(s)	230, 459
TseI	GCWGC	2 cut(s)	266, 400
TspGWI	ACGGA	3 cut(s)	50, 112, 277
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	3 cut(s)	338, 543, 653
XceI	RCATGY	2 cut(s)	119, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XmiI	GTMKAC	2 cut(s)	188, 421
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.