Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019309

Physical Location & Seq

Genomic Coordinates Reverse (-)

34932929 .. 34935663

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGATTTTCGAAAGGAGCGACTCCACAACTTCCTGTCGGTTTGACTCGTTAGGCTTCGACTCCGAGCCAGAGATCGCAATGAATGTTTTCGATATCACCCGGACCAAGCACTGCTCGGTGGAAAGATTAAAGAGATGGAGGCAAGCCGCCCTCGTCTTGAACGCTTCCAGGAGGTTCCGATATACACCCAATCTTCACTCTGAGAACGAGAAGAAGGAAACCCTGGCCAAGATCAGGACGCATGCGCAGGCTATAAGACAAGCATTCCTGTTTAAAGAGGGCAGTAGTAGGGTACCCGAAACTGTGTATCGGAGGGGCCCTGGATGCAGATCAAAATCTCCTCAAGTCACCACAGTCGGCCGTCATGATGGGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

127

Amino Acids

14.69

Weight (kDa)

10.32

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	30 - 71	3.1e-16	Ca2+-ATPase N terminal autoinhibitory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019309)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G072200_v2.0.a1
rosa_samantha	Rh4AG085600 Rh4AG090800 Rh4BG088000 Rh4BG088500 Rh4DG083100 Rh4DG083700 Rh5AG265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	228, 361
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	170, 225, 322
AoxI	GGCC	3 cut(s)	228, 319, 361
ApaI	GGGCCC	1 cut(s)	323
Asp700I	GAANNNNTTC	2 cut(s)	8, 89
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	105, 319, 320
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	91, 343
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	323
BccI	CCATC	2 cut(s)	132, 365
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	3 cut(s)	172, 227, 324
BcnI	CCSGG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	4 cut(s)	103, 172, 227, 324
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	3 cut(s)	105, 319, 320
BmiI	GGNNCC	4 cut(s)	179, 297, 320, 321
BmrFI	CCNGG	4 cut(s)	103, 172, 227, 324
BmsI	GCATC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	103
BsaBI	GATNNNNATC	2 cut(s)	331, 337
BsaJI	CCNNGG	2 cut(s)	225, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	2 cut(s)	331, 337
BseBI	CCWGG	3 cut(s)	172, 227, 324
BseDI	CCNNGG	2 cut(s)	225, 322
BseGI	GGATG	1 cut(s)	332
BseJI	GATNNNNATC	2 cut(s)	331, 337
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	230, 321, 363
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	230, 321, 363
Bsp119I	TTCGAA	1 cut(s)	12
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	75, 234, 332
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	230, 321, 363
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	179, 297, 320, 321
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	225, 322
BssMI	GATC	3 cut(s)	75, 234, 332
Bst2UI	CCWGG	3 cut(s)	172, 227, 324
Bst4CI	ACNGT	2 cut(s)	307, 358
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	147, 246, 252
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	78, 237, 335
BstMBI	GATC	3 cut(s)	75, 234, 332
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	3 cut(s)	172, 227, 324
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	101, 170, 225, 322
BstSLI	GKGCMC	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	230, 321, 363
BtsCI	GGATG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	147, 246, 252
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	105, 319, 320
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	2 cut(s)	245, 368
CviJI	RGCY	7 cut(s)	57, 70, 149, 230, 254, 321, 363
CviKI_1	RGCY	7 cut(s)	57, 70, 149, 230, 254, 321, 363
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	77, 236, 334
DpnII	GATC	3 cut(s)	75, 234, 332
DraI	TTTAAA	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	228, 361
EagI	CGGCCG	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	105
Eco52I	CGGCCG	1 cut(s)	361
EcoO109I	RGGNCCY	2 cut(s)	319, 320
EcoRII	CCWGG	3 cut(s)	170, 225, 322
EcoRV	GATATC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	2 cut(s)	248, 371
FaiI	YATR	4 cut(s)	186, 246, 257, 369
FatI	CATG	2 cut(s)	244, 367
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	230, 321, 363
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	248, 371
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	23, 47, 62
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	91, 343
Hpy188I	TCNGA	4 cut(s)	67, 182, 205, 315
Hpy188III	TCNNGA	3 cut(s)	160, 238, 368
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	307, 358
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	248, 371
HspAI	GCGC	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	75, 234, 332
LmnI	GCTCC	1 cut(s)	18
LweI	GCATC	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	77, 236, 334
MboI	GATC	3 cut(s)	75, 234, 332
MboII	GAAGA	3 cut(s)	16, 188, 226
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	379
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	17, 41, 56
MnlI	CCTC	6 cut(s)	135, 164, 168, 274, 309, 354
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	2 cut(s)	8, 89
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	3 cut(s)	131, 276, 382
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	4 cut(s)	103, 172, 227, 324
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	3 cut(s)	172, 227, 324
MwoI	GCNNNNNNNGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	75, 234, 332
NlaIII	CATG	2 cut(s)	248, 371
NlaIV	GGNNCC	4 cut(s)	179, 297, 320, 321
NmuCI	GTSAC	1 cut(s)	349
NsbI	TGCGCA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	2 cut(s)	8, 89
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	3 cut(s)	17, 41, 56
PpsI	GAGTC	3 cut(s)	17, 41, 56
Psp6I	CCWGG	3 cut(s)	170, 225, 322
PspGI	CCWGG	3 cut(s)	170, 225, 322
PspN4I	GGNNCC	4 cut(s)	179, 297, 320, 321
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	105, 319, 320
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	131, 276, 382
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	75, 234, 332
Sau96I	GGNCC	3 cut(s)	105, 319, 320
SchI	GAGTC	3 cut(s)	17, 41, 56
ScrFI	CCNGG	4 cut(s)	103, 172, 227, 324
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	4 cut(s)	101, 170, 225, 322
TaaI	ACNGT	2 cut(s)	307, 358
TaqI	TCGA	3 cut(s)	12, 60, 93
TasI	AATT	1 cut(s)	379
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	131, 276, 382
Tru9I	TTAA	3 cut(s)	131, 276, 382
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	17, 98
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	8, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.