Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019309

Physical Location & Seq

Genomic Coordinates Reverse (-)

19026278 .. 19037034

Gene Structure 10757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGTCAATCAACGGGCTCGCCGAACCAGAAAAACTATGATGAGGAAGCCGGAACCAACCGTTCCGGCGACGACGAGGACTGCTCGAGTGTTTTTGAGATTGCCAGAACTAAGAATGCTTCCGTCGAGCGTCTCCGCCGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTCCGGTATACCTTAGACTTGAAAAAGGAGGAAGAAAAAAAGAAGACGTTAAGCAAGATTAGAGCACATGCAGAAGTCATACGAGCTGCATTTATTTTCCAGAAATCCATAACACAGGAAAATGGAATTGTGCCACCAAAACCAAGTTCTGCTGGTGAATTTCCAATTGGACAAGAAGAACTAGCTTCAATTTCAAGGGATCATAATTTTACTACTCTGCAGCAATATGGGGGGGTCAAAGGCCTCGGAGAATTATTGAAAACAAGTTTAGAAAAGGGAATTCCTGGAAGTGATGATGATTTACTAAAACGAAAAACTGCATATGGATCCAACACATATCCCCGGAAAAAACCAAGGAGTTTCTGGGTAACCAACCAGTTATGCATTAGGCGTATAATGAGATTGAAATCGGCAATGCTCGACGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

9.67

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	32 - 72	6e-18	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	136 - 183	9.3e-07	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019309)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G072200_v2.0.a1
rosa_samantha	Rh4AG085600 Rh4AG090800 Rh4BG088000 Rh4BG088500 Rh4DG083100 Rh4DG083700 Rh5AG265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	2 cut(s)	136, 152
AclWI	GGATC	3 cut(s)	387, 501, 514
AcsI	RAATTY	2 cut(s)	338, 459
AgsI	TTSAA	5 cut(s)	202, 369, 375, 439, 586
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AluBI	AGCT	2 cut(s)	266, 365
AluI	AGCT	2 cut(s)	266, 365
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	387, 501, 514
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	266, 400
ApoI	RAATTY	2 cut(s)	338, 459
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	253, 412
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	398
BisI	GCNGC	3 cut(s)	153, 267, 401
BlsI	GCNGC	3 cut(s)	154, 268, 402
Bme1390I	CCNGG	2 cut(s)	465, 523
BmeT110I	CYCGRG	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	55, 508
BmrFI	CCNGG	2 cut(s)	465, 523
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	424, 521, 533
BsaWI	WCCGGW	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	424, 521, 533
BseJI	GATNNNNATC	1 cut(s)	586
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	253, 412
BshFI	GGCC	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	4 cut(s)	51, 66, 184, 523
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	20, 247
Bsp143I	GATC	2 cut(s)	379, 506
BspACI	CCGC	2 cut(s)	136, 152
BspANI	GGCC	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	55, 508
BspMAI	CTGCAG	1 cut(s)	402
BspPI	GGATC	3 cut(s)	387, 501, 514
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	424, 521, 533
BssMI	GATC	2 cut(s)	379, 506
BssNAI	GTATAC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	533
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	20, 150
BstDEI	CTNAG	2 cut(s)	111, 193
BstEII	GGTNACC	1 cut(s)	547
BstKTI	GATC	2 cut(s)	382, 509
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	379, 506
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	463, 521
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	253, 412
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BstZ17I	GTATAC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	20, 150
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	18, 50, 266, 365, 423
CviKI_1	RGCY	5 cut(s)	18, 50, 266, 365, 423
DdeI	CTNAG	2 cut(s)	111, 193
DpnI	GATC	2 cut(s)	381, 508
DpnII	GATC	2 cut(s)	379, 506
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	533
EcoT22I	ATGCAT	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	533
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	1 cut(s)	251
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	3 cut(s)	153, 267, 401
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	153, 267, 401
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	3 cut(s)	153, 267, 401
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	4 cut(s)	51, 66, 184, 523
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	2 cut(s)	4, 180
HpaII	CCGG	4 cut(s)	51, 66, 184, 523
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	5 cut(s)	74, 77, 128, 180, 605
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	251, 269, 400, 500, 564
HpyF3I	CTNAG	2 cut(s)	111, 193
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	379, 506
Lsp1109I	GCAGC	2 cut(s)	253, 412
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	381, 508
MboI	GATC	2 cut(s)	379, 506
MboII	GAAGA	3 cut(s)	224, 235, 368
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	20, 247
MluCI	AATT	7 cut(s)	306, 338, 345, 369, 385, 431, 459
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	122, 534
MnlI	CCTC	5 cut(s)	37, 70, 138, 202, 434
Mph1103I	ATGCAT	1 cut(s)	566
MseI	TTAA	1 cut(s)	230
MspI	CCGG	4 cut(s)	51, 66, 184, 523
MspR9I	CCNGG	2 cut(s)	465, 523
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	465
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	2 cut(s)	379, 506
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	55, 508
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	154, 268, 402
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	463
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	55, 508
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	153, 267, 401
Sau3AI	GATC	2 cut(s)	379, 506
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	465, 523
SduI	GDGCHC	2 cut(s)	20, 247
SetI	ASST	4 cut(s)	194, 230, 268, 367
SfcI	CTRYAG	1 cut(s)	398
Sfr274I	CTCGAG	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	7 cut(s)	306, 338, 345, 369, 385, 431, 459
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	2 cut(s)	136, 152
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	463, 521
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	4 cut(s)	86, 126, 178, 600
TasI	AATT	7 cut(s)	306, 338, 345, 369, 385, 431, 459
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	2 cut(s)	266, 400
TspGWI	ACGGA	1 cut(s)	112
XapI	RAATTY	2 cut(s)	338, 459
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.