Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019309

Physical Location & Seq

Genomic Coordinates Forward (+)

17918477 .. 17921307

Gene Structure 2831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTTGCTTCCATGTACTATAATAAGCCATTAATTAAGCCCTGCTGTGTTCGTTTCAGGAATTGGAAGAACCCACTCTCCAACCGAAAATTTCGGCTTGGTGCAGGAGGAGACTCTTCTCTCTCCAACAGCGAAATCTCAGAGAAAGAGTTGGAAGCAGACAAGCAGGTTGACTTTACGGTCGCGTGGATCCTGAAGTGGACCTCAATAGTCAATATAGCACTGTGCTGTACGGACCAGCATATGAGTCACCCAATAAGCAGCTCGCCTGACCGACCAAACCACGATTTAGAGGCCGGAACCAGTCGCTCAGGCAACGTGAACGACGATGAGTCGTGGACTAATCCTTTTGATATGAACAGTACCAAGTATGCTTCTGTTGAACGCCTCAAGCGTTGGAGGAAAGCAGCACTTGTACTGAATTCTTCTCGCCGATTCCGATACACCCTCAACTTGAAAAAGGAAGAAGAGAAGAAACAGATACTGAGGAAGATAAGAGCACATGCACAAGCCATACGAGCTGCATCTTTATACGCAGAAGTTGGAAATCCCTTGCAAGGTACTTGCATTTCACCCATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0043621 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

9.53

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	115 - 157	2.1e-16	Ca2+-ATPase N terminal autoinhibitory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019309)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G072200_v2.0.a1
rosa_samantha	Rh4AG085600 Rh4AG090800 Rh4BG088000 Rh4BG088500 Rh4DG083100 Rh4DG083700 Rh5AG265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	157
AccII	CGCG	1 cut(s)	185
AclWI	GGATC	2 cut(s)	184, 197
AcsI	RAATTY	2 cut(s)	89, 421
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	5 cut(s)	17, 232, 364, 417, 562
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	383, 457
AhdI	GACNNNNNGTC	1 cut(s)	331
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	2 cut(s)	264, 521
AluI	AGCT	2 cut(s)	264, 521
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	184, 197
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	261, 407, 521
ApoI	RAATTY	2 cut(s)	89, 421
AseI	ATTAAT	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	201, 235
AsuHPI	GGTGA	2 cut(s)	242, 564
AvaII	GGWCC	2 cut(s)	201, 235
BamHI	GGATCC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	273, 419, 508
BccI	CCATC	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	262, 408, 522
BlsI	GCNGC	3 cut(s)	263, 409, 523
Bme18I	GGWCC	2 cut(s)	201, 235
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	201, 235
BmiI	GGNNCC	2 cut(s)	191, 301
BmsI	GCATC	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	3 cut(s)	153, 324, 476
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	273, 419, 508
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	3 cut(s)	152, 323, 477
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	191, 301
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	184, 197
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	181, 225, 362
Bst6I	CTCTTC	2 cut(s)	121, 462
BstC8I	GCNNGC	2 cut(s)	6, 266
BstDEI	CTNAG	3 cut(s)	139, 310, 485
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	189
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	506
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	273, 419, 508
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	6, 266
CaiI	CAGNNNCTG	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	201, 235
Csp6I	GTAC	5 cut(s)	16, 231, 363, 416, 561
CviAII	CATG	2 cut(s)	13, 503
CviJI	RGCY	7 cut(s)	28, 40, 97, 264, 296, 512, 521
CviKI_1	RGCY	7 cut(s)	28, 40, 97, 264, 296, 512, 521
CviQI	GTAC	5 cut(s)	16, 231, 363, 416, 561
DdeI	CTNAG	3 cut(s)	139, 310, 485
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	121, 462
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	2 cut(s)	121, 462
Eco47I	GGWCC	2 cut(s)	201, 235
Eco57I	CTGAAG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	421
FaeI	CATG	2 cut(s)	16, 506
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	2 cut(s)	12, 502
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	262, 408, 522
Fsp4HI	GCNGC	3 cut(s)	262, 408, 522
GluI	GCNGC	3 cut(s)	262, 408, 522
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	2 cut(s)	16, 506
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	113, 247, 332, 435
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	242, 564
Hpy166II	GTNNAC	4 cut(s)	172, 201, 322, 339
Hpy188I	TCNGA	2 cut(s)	142, 440
Hpy188III	TCNNGA	2 cut(s)	58, 193
Hpy8I	GTNNAC	4 cut(s)	172, 201, 322, 339
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	3 cut(s)	181, 225, 362
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	104, 506, 524, 556, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	139, 310, 485
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	16, 506
Kzo9I	GATC	1 cut(s)	189
Lsp1109I	GCAGC	3 cut(s)	273, 419, 508
LweI	GCATC	1 cut(s)	533
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	7 cut(s)	79, 108, 417, 476, 479, 484, 502
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	5 cut(s)	33, 61, 89, 421, 580
MlyI	GAGTC	3 cut(s)	107, 256, 341
MmeI	TCCRAC	5 cut(s)	105, 132, 150, 377, 523
MnlI	CCTC	7 cut(s)	101, 214, 286, 393, 398, 458, 480
MseI	TTAA	3 cut(s)	32, 36, 583
MspI	CCGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	2 cut(s)	16, 506
NlaIV	GGNNCC	2 cut(s)	191, 301
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	506
PacI	TTAATTAA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 391, 436
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	263, 409, 523
PleI	GAGTC	3 cut(s)	107, 255, 340
PpsI	GAGTC	3 cut(s)	107, 255, 340
PshBI	ATTAAT	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	191, 301
PspPI	GGNCC	2 cut(s)	201, 235
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	5 cut(s)	17, 232, 364, 417, 562
RsaNI	GTAC	5 cut(s)	16, 231, 363, 416, 561
SaqAI	TTAA	3 cut(s)	32, 36, 583
SatI	GCNGC	3 cut(s)	262, 408, 522
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	201, 235
SchI	GAGTC	3 cut(s)	107, 256, 341
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	6 cut(s)	171, 206, 266, 321, 523, 562
SfaNI	GCATC	1 cut(s)	533
SinI	GGWCC	2 cut(s)	201, 235
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	5 cut(s)	33, 61, 89, 421, 580
TaaI	ACNGT	3 cut(s)	181, 225, 362
TaiI	ACGT	1 cut(s)	321
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	33, 61, 89, 421, 580
TatI	WGTACW	2 cut(s)	15, 415
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	3 cut(s)	32, 36, 583
Tru9I	TTAA	3 cut(s)	32, 36, 583
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	261, 407, 521
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	201, 235
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	2 cut(s)	89, 421
XceI	RCATGY	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.