Polygalacturonase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48100 |
| fragaria_vesca | FvH4_4g20990 FvH4_4g20990 |
| malus_domestica | MD13G1146600.v1.1 MD16G1140500.v1.1 |
| prunus_persica | Prupe.1G110100_v2.0.a1 Prupe.1G110100_v2.0.a1 Prupe.1G110100_v2.0.a1 |
| pyrus_communis | pycom13g12630 pycom16g12470 |
| rosa_chinensis | RchiOBHm_Chr4g0426531 |
| rosa_laevigata | RLG00000007292 |
| rosa_roxburghii | Rroxscaffold_5G00368540 |
| rosa_rugosa | Rorug04G0212700 Rorug04G0212700 Rorug04G0212700 Rorug04G0212700 |
| rosa_samantha | Rh4AG268200 Rh4BG274500 Rh4CG288900 Rh4DG271300 |
| rosa_wichuraiana | Rw4G023270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 317 |
| AccI | GTMKAC | 2 cut(s) | 1122, 1430 |
| AciI | CCGC | 5 cut(s) | 317, 455, 1050, 1068, 1390 |
| AclWI | GGATC | 7 cut(s) | 41, 588, 609, 622, 796, 809, 1319 |
| AcoI | YGGCCR | 1 cut(s) | 565 |
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AfaI | GTAC | 2 cut(s) | 747, 1267 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 134, 461, 602, 929, 1144, 1307 |
| AgsI | TTSAA | 7 cut(s) | 156, 256, 382, 393, 557, 873, 1091 |
| AhlI | ACTAGT | 1 cut(s) | 1117 |
| AjnI | CCWGG | 3 cut(s) | 217, 418, 625 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 5 cut(s) | 111, 378, 760, 781, 1294 |
| AluI | AGCT | 5 cut(s) | 111, 378, 760, 781, 1294 |
| Alw21I | GWGCWC | 1 cut(s) | 960 |
| Alw26I | GTCTC | 1 cut(s) | 480 |
| Alw44I | GTGCAC | 1 cut(s) | 956 |
| AlwI | GGATC | 7 cut(s) | 41, 588, 609, 622, 796, 809, 1319 |
| AoxI | GGCC | 6 cut(s) | 464, 476, 565, 920, 1146, 1226 |
| ApaLI | GTGCAC | 1 cut(s) | 956 |
| ApeKI | GCWGC | 2 cut(s) | 305, 1059 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 226 |
| AspS9I | GGNCC | 6 cut(s) | 25, 214, 407, 464, 605, 920 |
| AsuHPI | GGTGA | 3 cut(s) | 293, 765, 869 |
| AvaII | GGWCC | 4 cut(s) | 25, 214, 407, 605 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BaeGI | GKGCMC | 3 cut(s) | 195, 960, 1211 |
| BalI | TGGCCA | 1 cut(s) | 567 |
| BamHI | GGATCC | 2 cut(s) | 614, 801 |
| Bbv12I | GWGCWC | 1 cut(s) | 960 |
| BbvCI | CCTCAGC | 2 cut(s) | 167, 1416 |
| BbvI | GCAGC | 2 cut(s) | 292, 1046 |
| BccI | CCATC | 7 cut(s) | 278, 404, 434, 725, 791, 1312, 1388 |
| BciT130I | CCWGG | 3 cut(s) | 219, 420, 627 |
| BciVI | GTATCC | 1 cut(s) | 1075 |
| BcoDI | GTCTC | 1 cut(s) | 480 |
| BcuI | ACTAGT | 1 cut(s) | 1117 |
| BfaI | CTAG | 2 cut(s) | 1118, 1438 |
| BfmI | CTRYAG | 2 cut(s) | 339, 366 |
| BfuI | GTATCC | 1 cut(s) | 1075 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 463 |
| BisI | GCNGC | 4 cut(s) | 306, 318, 455, 1060 |
| BlpI | GCTNAGC | 1 cut(s) | 782 |
| BlsI | GCNGC | 4 cut(s) | 307, 319, 456, 1061 |
| Bme1390I | CCNGG | 3 cut(s) | 219, 420, 627 |
| Bme18I | GGWCC | 4 cut(s) | 25, 214, 407, 605 |
| BmgT120I | GGNCC | 6 cut(s) | 25, 214, 407, 464, 605, 920 |
| BmiI | GGNNCC | 7 cut(s) | 6, 216, 465, 550, 606, 616, 803 |
| BmrFI | CCNGG | 3 cut(s) | 219, 420, 627 |
| BmrI | ACTGGG | 2 cut(s) | 549, 1420 |
| BmsI | GCATC | 1 cut(s) | 441 |
| BmuI | ACTGGG | 2 cut(s) | 549, 1420 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1213, 1245 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| Bpu10I | CCTNAGC | 2 cut(s) | 167, 1416 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 782 |
| BpuEI | CTTGAG | 2 cut(s) | 49, 1338 |
| BsaJI | CCNNGG | 1 cut(s) | 217 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 95, 125, 129, 159, 937, 967, 1357, 1387 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 134, 461, 602, 929, 1144, 1307 |
| Bse1I | ACTGG | 6 cut(s) | 20, 143, 429, 544, 886, 1426 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 3 cut(s) | 568, 620, 859 |
| BseBI | CCWGG | 3 cut(s) | 219, 420, 627 |
| BseDI | CCNNGG | 1 cut(s) | 217 |
| BseGI | GGATG | 3 cut(s) | 890, 1327, 1399 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 134, 461, 602, 929, 1144, 1307 |
| BseMI | GCAATG | 3 cut(s) | 568, 620, 859 |
| BseMII | CTCAG | 8 cut(s) | 181, 201, 210, 417, 482, 725, 1395, 1407 |
| BseNI | ACTGG | 6 cut(s) | 20, 143, 429, 544, 886, 1426 |
| BseRI | GAGGAG | 3 cut(s) | 165, 168, 1237 |
| BseSI | GKGCMC | 3 cut(s) | 195, 960, 1211 |
| BseXI | GCAGC | 2 cut(s) | 292, 1046 |
| BshFI | GGCC | 6 cut(s) | 466, 478, 567, 922, 1148, 1228 |
| BsiHKAI | GWGCWC | 1 cut(s) | 960 |
| BslFI | GGGAC | 3 cut(s) | 1066, 1363, 1408 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 134, 461, 602, 929, 1144, 1307 |
| BsmAI | GTCTC | 1 cut(s) | 480 |
| BsmFI | GGGAC | 3 cut(s) | 1066, 1363, 1408 |
| BsmI | GAATGC | 1 cut(s) | 1345 |
| BsnI | GGCC | 6 cut(s) | 466, 478, 567, 922, 1148, 1228 |
| Bsp1286I | GDGCHC | 3 cut(s) | 195, 960, 1211 |
| Bsp1407I | TGTACA | 2 cut(s) | 745, 1265 |
| Bsp143I | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 782 |
| BspACI | CCGC | 5 cut(s) | 317, 455, 1050, 1068, 1390 |
| BspANI | GGCC | 6 cut(s) | 466, 478, 567, 922, 1148, 1228 |
| BspCNI | CTCAG | 8 cut(s) | 180, 202, 209, 416, 481, 724, 1396, 1408 |
| BspHI | TCATGA | 2 cut(s) | 261, 663 |
| BspLI | GGNNCC | 7 cut(s) | 6, 216, 465, 550, 606, 616, 803 |
| BspMAI | CTGCAG | 1 cut(s) | 370 |
| BspPI | GGATC | 7 cut(s) | 41, 588, 609, 622, 796, 809, 1319 |
| BsrBI | CCGCTC | 1 cut(s) | 317 |
| BsrDI | GCAATG | 3 cut(s) | 568, 620, 859 |
| BsrGI | TGTACA | 2 cut(s) | 745, 1265 |
| BsrI | ACTGG | 6 cut(s) | 20, 143, 429, 544, 886, 1426 |
| BssECI | CCNNGG | 1 cut(s) | 217 |
| BssMI | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| BssNAI | GTATAC | 1 cut(s) | 1431 |
| Bst1107I | GTATAC | 1 cut(s) | 1431 |
| Bst2UI | CCWGG | 3 cut(s) | 219, 420, 627 |
| Bst4CI | ACNGT | 4 cut(s) | 501, 707, 991, 1258 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstAUI | TGTACA | 2 cut(s) | 745, 1265 |
| BstC8I | GCNNGC | 4 cut(s) | 416, 593, 1246, 1388 |
| BstDEI | CTNAG | 9 cut(s) | 167, 196, 210, 403, 468, 711, 782, 1404, 1416 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1142 |
| BstF5I | GGATG | 3 cut(s) | 890, 1327, 1399 |
| BstKTI | GATC | 6 cut(s) | 36, 54, 583, 617, 804, 1327 |
| BstMAI | GTCTC | 1 cut(s) | 480 |
| BstMBI | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 314, 463, 1056 |
| BstNI | CCWGG | 3 cut(s) | 219, 420, 627 |
| BstNSI | RCATGY | 1 cut(s) | 975 |
| BstSCI | CCNGG | 3 cut(s) | 217, 418, 625 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 366 |
| BstSLI | GKGCMC | 3 cut(s) | 195, 960, 1211 |
| BstV1I | GCAGC | 2 cut(s) | 292, 1046 |
| BstX2I | RGATCY | 3 cut(s) | 580, 614, 801 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 15, 440, 1335 |
| BstYI | RGATCY | 3 cut(s) | 580, 614, 801 |
| BstZ17I | GTATAC | 1 cut(s) | 1431 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BsuI | GTATCC | 1 cut(s) | 1075 |
| BsuRI | GGCC | 6 cut(s) | 466, 478, 567, 922, 1148, 1228 |
| BtsCI | GGATG | 3 cut(s) | 890, 1327, 1399 |
| BtsI | GCAGTG | 2 cut(s) | 300, 1255 |
| BtsIMutI | CAGTG | 6 cut(s) | 13, 300, 506, 537, 996, 1255 |
| Cac8I | GCNNGC | 4 cut(s) | 416, 593, 1246, 1388 |
| CciI | TCATGA | 2 cut(s) | 261, 663 |
| Cfr13I | GGNCC | 6 cut(s) | 25, 214, 407, 464, 605, 920 |
| CseI | GACGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 2 cut(s) | 746, 1266 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 54, 89, 482, 517, 557, 592 |
| CviAII | CATG | 7 cut(s) | 262, 588, 664, 721, 972, 1041, 1304 |
| CviQI | GTAC | 2 cut(s) | 746, 1266 |
| DdeI | CTNAG | 9 cut(s) | 167, 196, 210, 403, 468, 711, 782, 1404, 1416 |
| DpnI | GATC | 6 cut(s) | 35, 53, 582, 616, 803, 1326 |
| DpnII | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| EaeI | YGGCCR | 1 cut(s) | 565 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| EciI | GGCGGA | 1 cut(s) | 1057 |
| Eco147I | AGGCCT | 2 cut(s) | 1148, 1228 |
| Eco32I | GATATC | 1 cut(s) | 86 |
| Eco47I | GGWCC | 4 cut(s) | 25, 214, 407, 605 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1142 |
| EcoO109I | RGGNCCY | 4 cut(s) | 214, 407, 464, 605 |
| EcoRII | CCWGG | 3 cut(s) | 217, 418, 625 |
| EcoRV | GATATC | 1 cut(s) | 86 |
| FaeI | CATG | 7 cut(s) | 265, 591, 667, 724, 975, 1044, 1307 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1278, 1310 |
| FaqI | GGGAC | 3 cut(s) | 1066, 1363, 1408 |
| FatI | CATG | 7 cut(s) | 261, 587, 663, 720, 971, 1040, 1303 |
| FauI | CCCGC | 2 cut(s) | 1043, 1383 |
| FauNDI | CATATG | 1 cut(s) | 1213 |
| FblI | GTMKAC | 2 cut(s) | 1122, 1430 |
| Fnu4HI | GCNGC | 4 cut(s) | 306, 318, 455, 1060 |
| FokI | GGATG | 3 cut(s) | 897, 1334, 1406 |
| Fsp4HI | GCNGC | 4 cut(s) | 306, 318, 455, 1060 |
| FspBI | CTAG | 2 cut(s) | 1118, 1438 |
| GluI | GCNGC | 4 cut(s) | 306, 318, 455, 1060 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 6 cut(s) | 466, 478, 567, 922, 1148, 1228 |
| HgaI | GACGC | 1 cut(s) | 140 |
| Hin1II | CATG | 7 cut(s) | 265, 591, 667, 724, 975, 1044, 1307 |
| HindIII | AAGCTT | 1 cut(s) | 779 |
| HphI | GGTGA | 3 cut(s) | 293, 765, 869 |
| Hpy166II | GTNNAC | 4 cut(s) | 746, 958, 1123, 1431 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 244, 450, 471, 1018, 1031, 1285 |
| Hpy188III | TCNNGA | 4 cut(s) | 262, 664, 1036, 1355 |
| Hpy8I | GTNNAC | 4 cut(s) | 746, 958, 1123, 1431 |
| HpyAV | CCTTC | 6 cut(s) | 71, 132, 162, 551, 734, 1301 |
| HpyCH4III | ACNGT | 4 cut(s) | 501, 707, 991, 1258 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 6 cut(s) | 308, 368, 591, 867, 958, 1248 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 314, 463, 1056 |
| HpyF3I | CTNAG | 9 cut(s) | 167, 196, 210, 403, 468, 711, 782, 1404, 1416 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| Hsp92II | CATG | 7 cut(s) | 265, 591, 667, 724, 975, 1044, 1307 |
| Kzo9I | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| LmnI | GCTCC | 5 cut(s) | 4, 116, 124, 154, 367 |
| Lsp1109I | GCAGC | 2 cut(s) | 292, 1046 |
| LweI | GCATC | 1 cut(s) | 441 |
| MaeI | CTAG | 2 cut(s) | 1118, 1438 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MaeIII | GTNAC | 6 cut(s) | 635, 910, 926, 995, 1177, 1250 |
| MalI | GATC | 6 cut(s) | 35, 53, 582, 616, 803, 1326 |
| MbiI | CCGCTC | 1 cut(s) | 317 |
| MboI | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| MboII | GAAGA | 7 cut(s) | 46, 93, 173, 222, 231, 391, 652 |
| MfeI | CAATTG | 1 cut(s) | 1377 |
| MflI | RGATCY | 3 cut(s) | 580, 614, 801 |
| MhlI | GDGCHC | 3 cut(s) | 195, 960, 1211 |
| MlsI | TGGCCA | 1 cut(s) | 567 |
| MluNI | TGGCCA | 1 cut(s) | 567 |
| MlyI | GAGTC | 5 cut(s) | 52, 833, 955, 1035, 1345 |
| MmeI | TCCRAC | 2 cut(s) | 1005, 1316 |
| Mox20I | TGGCCA | 1 cut(s) | 567 |
| MroXI | GAANNNNTTC | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 567 |
| MseI | TTAA | 3 cut(s) | 650, 684, 692 |
| MslI | CAYNNNNRTG | 2 cut(s) | 989, 1091 |
| Msp20I | TGGCCA | 1 cut(s) | 567 |
| MspR9I | CCNGG | 3 cut(s) | 219, 420, 627 |
| MunI | CAATTG | 1 cut(s) | 1377 |
| Mva1269I | GAATGC | 1 cut(s) | 1345 |
| MvaI | CCWGG | 3 cut(s) | 219, 420, 627 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 314, 463, 1056 |
| NdeI | CATATG | 1 cut(s) | 1213 |
| NdeII | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| NlaIII | CATG | 7 cut(s) | 265, 591, 667, 724, 975, 1044, 1307 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 216, 465, 550, 606, 616, 803 |
| NmuCI | GTSAC | 6 cut(s) | 635, 910, 926, 995, 1177, 1250 |
| NspI | RCATGY | 1 cut(s) | 975 |
| PagI | TCATGA | 2 cut(s) | 261, 663 |
| PceI | AGGCCT | 2 cut(s) | 1148, 1228 |
| PctI | GAATGC | 1 cut(s) | 1345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 226 |
| PfeI | GAWTC | 6 cut(s) | 344, 445, 657, 696, 1013, 1032 |
| PkrI | GCNGC | 4 cut(s) | 307, 319, 456, 1061 |
| PleI | GAGTC | 5 cut(s) | 51, 833, 954, 1034, 1345 |
| PpsI | GAGTC | 5 cut(s) | 51, 833, 954, 1034, 1345 |
| PpuMI | RGGWCCY | 3 cut(s) | 214, 407, 605 |
| Psp5II | RGGWCCY | 3 cut(s) | 214, 407, 605 |
| Psp6I | CCWGG | 3 cut(s) | 217, 418, 625 |
| PspGI | CCWGG | 3 cut(s) | 217, 418, 625 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 216, 465, 550, 606, 616, 803 |
| PspPI | GGNCC | 6 cut(s) | 25, 214, 407, 464, 605, 920 |
| PspPPI | RGGWCCY | 3 cut(s) | 214, 407, 605 |
| PstI | CTGCAG | 1 cut(s) | 370 |
| PsuI | RGATCY | 3 cut(s) | 580, 614, 801 |
| RsaI | GTAC | 2 cut(s) | 747, 1267 |
| RsaNI | GTAC | 2 cut(s) | 746, 1266 |
| RseI | CAYNNNNRTG | 2 cut(s) | 989, 1091 |
| SaqAI | TTAA | 3 cut(s) | 650, 684, 692 |
| SatI | GCNGC | 4 cut(s) | 306, 318, 455, 1060 |
| Sau3AI | GATC | 6 cut(s) | 33, 51, 580, 614, 801, 1324 |
| Sau96I | GGNCC | 6 cut(s) | 25, 214, 407, 464, 605, 920 |
| SchI | GAGTC | 5 cut(s) | 52, 833, 955, 1035, 1345 |
| ScrFI | CCNGG | 3 cut(s) | 219, 420, 627 |
| SduI | GDGCHC | 3 cut(s) | 195, 960, 1211 |
| SfaNI | GCATC | 1 cut(s) | 441 |
| SfcI | CTRYAG | 2 cut(s) | 339, 366 |
| SinI | GGWCC | 4 cut(s) | 25, 214, 407, 605 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 989, 1091 |
| SmlI | CTYRAG | 2 cut(s) | 64, 1353 |
| SmoI | CTYRAG | 2 cut(s) | 64, 1353 |
| SpeI | ACTAGT | 1 cut(s) | 1117 |
| SseBI | AGGCCT | 2 cut(s) | 1148, 1228 |
| SsiI | CCGC | 5 cut(s) | 317, 455, 1050, 1068, 1390 |
| SspI | AATATT | 1 cut(s) | 1130 |
| SspMI | CTAG | 2 cut(s) | 1118, 1438 |
| StuI | AGGCCT | 2 cut(s) | 1148, 1228 |
| StyD4I | CCNGG | 3 cut(s) | 217, 418, 625 |
| TaaI | ACNGT | 4 cut(s) | 501, 707, 991, 1258 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TaqI | TCGA | 1 cut(s) | 1153 |
| TatI | WGTACW | 2 cut(s) | 745, 1265 |
| TauI | GCSGC | 2 cut(s) | 320, 457 |
| TfiI | GAWTC | 6 cut(s) | 344, 445, 657, 696, 1013, 1032 |
| Tru1I | TTAA | 3 cut(s) | 650, 684, 692 |
| Tru9I | TTAA | 3 cut(s) | 650, 684, 692 |
| TscAI | CASTG | 6 cut(s) | 20, 307, 506, 544, 996, 1255 |
| TseFI | GTSAC | 6 cut(s) | 635, 910, 926, 995, 1177, 1250 |
| TseI | GCWGC | 2 cut(s) | 305, 1059 |
| Tsp45I | GTSAC | 6 cut(s) | 635, 910, 926, 995, 1177, 1250 |
| TspDTI | ATGAA | 5 cut(s) | 278, 652, 737, 1121, 1320 |
| TspRI | CASTG | 6 cut(s) | 20, 307, 506, 544, 996, 1255 |
| VneI | GTGCAC | 1 cut(s) | 956 |
| VpaK11BI | GGWCC | 4 cut(s) | 25, 214, 407, 605 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1142 |
| XceI | RCATGY | 1 cut(s) | 975 |
| XmiI | GTMKAC | 2 cut(s) | 1122, 1430 |
| XmnI | GAANNNNTTC | 1 cut(s) | 226 |
| XspI | CTAG | 2 cut(s) | 1118, 1438 |