Prupe.1G110100_v2.0.a1

Polygalacturonase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
8778313 .. 8784047
5735 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G110100.2

Sequence Viewer

Length: 1440 bp
ATGGAGCCAATTCACTGGTTTATGGTCCTATGGATCGCATTGAGTCTAATGATCTTCCAAAACTCAAGCAACGTGGAAGGAAGATATCATTTCCACAAGAGGAACAAAAGCTCCCCTGCTCCTTCCCCTGACGCTGGAGAGCCAGTTGCTCCTTCAACCCCAAGCCTCAGCCCTCCTCCTCTTCCAAATGTGCCCTCAGACCCTTACCCTGAGGACCCTGGAAATAATTCTTCTGGTTCTTCAGATTGTGTGTTCAATGTCATGAATTATGGGGCAGTTGGTGATGGCTCTGCTGATGACACTGCTGCATTTAGAGCGGCTTGGAAAGAAGCCTGTGCTGTAGAATCTGGTGTGGTTTTCGCTCCTGCAGATTACAGCTTCAAAATTACTTCAACCATCTTCTCAGGTCCTTGCCAGCCTGGACTGGTATTCCAAGTAGATGGGATTCTGATGCCGCCAGAGGGGCCTCAGACTTGGCCTAAAGGAGACAGCCAAAAACAGTGGCTTGTGTTTTACAGGCTTGACAAAATGACTTTCACTGGGAGTGGAACCATTGAAGGCAATGGCCAAAAGTGGTGGGATCTCCCATGCAAGCCTCACAGGGGTCCTAATGGATCCACATTGCCAGGACAATGTGACAGCCCTGCTTTAATTAGATTCTTCATGAGCAACAATTTGGTGGTTAAGGGGTTAAGAATCCAAAACAGTCCTCAGTTCCACATGAAGTTTGATGGCTGTGAAGGTGTACAGATTGAGAAGCTGTCCATTTCCTCACCAAAGCTTAGCCCCAACACAGATGGGATCCACATAGAGAACACAAAATCTGTTGGCATATATGACTCTATGATTAGCAATGGTGATGATTGCATTTCAATAGGAACTGGATGTGCCAATGTTGATATAAGAGGTGTCACTTGTGGGCCAAGTCACGGGATTAGCATTGGGAGTCTTGGTGTGCACAATTCCCAAGCATGTGTTTCCAACATAACAGTGCGTGACACTATCATAAGGGAATCCGATAATGGAGTCAGAATCAAGACATGGCAAGGCGGGACGGGCTGCGTATCCGCCATAGTATTTGAGAACATTCAAATGGAGAATGTGATGAATTGCCTACTAGTAGACCAATATTACTGCCTATCAAAGGCCTGTCGAAACGAAACTTCGGCAGTTTATGTCACAGACTTGACATATAGAAACATAAAGGGCACATATGATGTGAGGAGGCCTCCAATTCACTTTGCTTGCAGTGACACGGTGGCTTGTACAAACATCACACTCTCGGAAGTTGAGCTTTACCCACATGAAGGAGAGTTGATGGATGATCCATTTTGTTGGAATGCTTATGGGACTCAAGAAACAGCCACTATACCTCCAATTGATTGCTTGCGGGATGGAGAGCCTGAGAGTGTGGCTGAGGTGTCCCAGTATACTTGCTAG

Protein Analysis

480

Amino Acids

52.13

Weight (kDa)

4.89

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 1122, 1430
AciI CCGC 5 cut(s) 317, 455, 1050, 1068, 1390
AclWI GGATC 7 cut(s) 41, 588, 609, 622, 796, 809, 1319
AcoI YGGCCR 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 747, 1267
AfiI CCNNNNNNNGG 6 cut(s) 134, 461, 602, 929, 1144, 1307
AgsI TTSAA 7 cut(s) 156, 256, 382, 393, 557, 873, 1091
AhlI ACTAGT 1 cut(s) 1117
AjnI CCWGG 3 cut(s) 217, 418, 625
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 111, 378, 760, 781, 1294
AluI AGCT 5 cut(s) 111, 378, 760, 781, 1294
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 956
AlwI GGATC 7 cut(s) 41, 588, 609, 622, 796, 809, 1319
AoxI GGCC 6 cut(s) 464, 476, 565, 920, 1146, 1226
ApaLI GTGCAC 1 cut(s) 956
ApeKI GCWGC 2 cut(s) 305, 1059
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 6 cut(s) 25, 214, 407, 464, 605, 920
AsuHPI GGTGA 3 cut(s) 293, 765, 869
AvaII GGWCC 4 cut(s) 25, 214, 407, 605
AxyI CCTNAGG 1 cut(s) 210
BaeGI GKGCMC 3 cut(s) 195, 960, 1211
BalI TGGCCA 1 cut(s) 567
BamHI GGATCC 2 cut(s) 614, 801
Bbv12I GWGCWC 1 cut(s) 960
BbvCI CCTCAGC 2 cut(s) 167, 1416
BbvI GCAGC 2 cut(s) 292, 1046
BccI CCATC 7 cut(s) 278, 404, 434, 725, 791, 1312, 1388
BciT130I CCWGG 3 cut(s) 219, 420, 627
BciVI GTATCC 1 cut(s) 1075
BcoDI GTCTC 1 cut(s) 480
BcuI ACTAGT 1 cut(s) 1117
BfaI CTAG 2 cut(s) 1118, 1438
BfmI CTRYAG 2 cut(s) 339, 366
BfuI GTATCC 1 cut(s) 1075
BglI GCCNNNNNGGC 1 cut(s) 463
BisI GCNGC 4 cut(s) 306, 318, 455, 1060
BlpI GCTNAGC 1 cut(s) 782
BlsI GCNGC 4 cut(s) 307, 319, 456, 1061
Bme1390I CCNGG 3 cut(s) 219, 420, 627
Bme18I GGWCC 4 cut(s) 25, 214, 407, 605
BmgT120I GGNCC 6 cut(s) 25, 214, 407, 464, 605, 920
BmiI GGNNCC 7 cut(s) 6, 216, 465, 550, 606, 616, 803
BmrFI CCNGG 3 cut(s) 219, 420, 627
BmrI ACTGGG 2 cut(s) 549, 1420
BmsI GCATC 1 cut(s) 441
BmuI ACTGGG 2 cut(s) 549, 1420
BplI GAGNNNNNCTC 2 cut(s) 1213, 1245
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 2 cut(s) 167, 1416
Bpu1102I GCTNAGC 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 49, 1338
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 8 cut(s) 95, 125, 129, 159, 937, 967, 1357, 1387
Bsc4I CCNNNNNNNGG 6 cut(s) 134, 461, 602, 929, 1144, 1307
Bse1I ACTGG 6 cut(s) 20, 143, 429, 544, 886, 1426
Bse21I CCTNAGG 1 cut(s) 210
Bse3DI GCAATG 3 cut(s) 568, 620, 859
BseBI CCWGG 3 cut(s) 219, 420, 627
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 3 cut(s) 890, 1327, 1399
BseLI CCNNNNNNNGG 6 cut(s) 134, 461, 602, 929, 1144, 1307
BseMI GCAATG 3 cut(s) 568, 620, 859
BseMII CTCAG 8 cut(s) 181, 201, 210, 417, 482, 725, 1395, 1407
BseNI ACTGG 6 cut(s) 20, 143, 429, 544, 886, 1426
BseRI GAGGAG 3 cut(s) 165, 168, 1237
BseSI GKGCMC 3 cut(s) 195, 960, 1211
BseXI GCAGC 2 cut(s) 292, 1046
BshFI GGCC 6 cut(s) 466, 478, 567, 922, 1148, 1228
BsiHKAI GWGCWC 1 cut(s) 960
BslFI GGGAC 3 cut(s) 1066, 1363, 1408
BslI CCNNNNNNNGG 6 cut(s) 134, 461, 602, 929, 1144, 1307
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 3 cut(s) 1066, 1363, 1408
BsmI GAATGC 1 cut(s) 1345
BsnI GGCC 6 cut(s) 466, 478, 567, 922, 1148, 1228
Bsp1286I GDGCHC 3 cut(s) 195, 960, 1211
Bsp1407I TGTACA 2 cut(s) 745, 1265
Bsp143I GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
Bsp1720I GCTNAGC 1 cut(s) 782
BspACI CCGC 5 cut(s) 317, 455, 1050, 1068, 1390
BspANI GGCC 6 cut(s) 466, 478, 567, 922, 1148, 1228
BspCNI CTCAG 8 cut(s) 180, 202, 209, 416, 481, 724, 1396, 1408
BspHI TCATGA 2 cut(s) 261, 663
BspLI GGNNCC 7 cut(s) 6, 216, 465, 550, 606, 616, 803
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 7 cut(s) 41, 588, 609, 622, 796, 809, 1319
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 3 cut(s) 568, 620, 859
BsrGI TGTACA 2 cut(s) 745, 1265
BsrI ACTGG 6 cut(s) 20, 143, 429, 544, 886, 1426
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
BssNAI GTATAC 1 cut(s) 1431
Bst1107I GTATAC 1 cut(s) 1431
Bst2UI CCWGG 3 cut(s) 219, 420, 627
Bst4CI ACNGT 4 cut(s) 501, 707, 991, 1258
Bst6I CTCTTC 1 cut(s) 186
BstAUI TGTACA 2 cut(s) 745, 1265
BstC8I GCNNGC 4 cut(s) 416, 593, 1246, 1388
BstDEI CTNAG 9 cut(s) 167, 196, 210, 403, 468, 711, 782, 1404, 1416
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 3 cut(s) 890, 1327, 1399
BstKTI GATC 6 cut(s) 36, 54, 583, 617, 804, 1327
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
BstMWI GCNNNNNNNGC 3 cut(s) 314, 463, 1056
BstNI CCWGG 3 cut(s) 219, 420, 627
BstNSI RCATGY 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 217, 418, 625
BstSFI CTRYAG 2 cut(s) 339, 366
BstSLI GKGCMC 3 cut(s) 195, 960, 1211
BstV1I GCAGC 2 cut(s) 292, 1046
BstX2I RGATCY 3 cut(s) 580, 614, 801
BstXI CCANNNNNNTGG 3 cut(s) 15, 440, 1335
BstYI RGATCY 3 cut(s) 580, 614, 801
BstZ17I GTATAC 1 cut(s) 1431
Bsu36I CCTNAGG 1 cut(s) 210
BsuI GTATCC 1 cut(s) 1075
BsuRI GGCC 6 cut(s) 466, 478, 567, 922, 1148, 1228
BtsCI GGATG 3 cut(s) 890, 1327, 1399
BtsI GCAGTG 2 cut(s) 300, 1255
BtsIMutI CAGTG 6 cut(s) 13, 300, 506, 537, 996, 1255
Cac8I GCNNGC 4 cut(s) 416, 593, 1246, 1388
CciI TCATGA 2 cut(s) 261, 663
Cfr13I GGNCC 6 cut(s) 25, 214, 407, 464, 605, 920
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 746, 1266
CspCI CAANNNNNGTGG 6 cut(s) 54, 89, 482, 517, 557, 592
CviAII CATG 7 cut(s) 262, 588, 664, 721, 972, 1041, 1304
CviQI GTAC 2 cut(s) 746, 1266
DdeI CTNAG 9 cut(s) 167, 196, 210, 403, 468, 711, 782, 1404, 1416
DpnI GATC 6 cut(s) 35, 53, 582, 616, 803, 1326
DpnII GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 1057
Eco147I AGGCCT 2 cut(s) 1148, 1228
Eco32I GATATC 1 cut(s) 86
Eco47I GGWCC 4 cut(s) 25, 214, 407, 605
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoO109I RGGNCCY 4 cut(s) 214, 407, 464, 605
EcoRII CCWGG 3 cut(s) 217, 418, 625
EcoRV GATATC 1 cut(s) 86
FaeI CATG 7 cut(s) 265, 591, 667, 724, 975, 1044, 1307
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 3 cut(s) 1066, 1363, 1408
FatI CATG 7 cut(s) 261, 587, 663, 720, 971, 1040, 1303
FauI CCCGC 2 cut(s) 1043, 1383
FauNDI CATATG 1 cut(s) 1213
FblI GTMKAC 2 cut(s) 1122, 1430
Fnu4HI GCNGC 4 cut(s) 306, 318, 455, 1060
FokI GGATG 3 cut(s) 897, 1334, 1406
Fsp4HI GCNGC 4 cut(s) 306, 318, 455, 1060
FspBI CTAG 2 cut(s) 1118, 1438
GluI GCNGC 4 cut(s) 306, 318, 455, 1060
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 6 cut(s) 466, 478, 567, 922, 1148, 1228
HgaI GACGC 1 cut(s) 140
Hin1II CATG 7 cut(s) 265, 591, 667, 724, 975, 1044, 1307
HindIII AAGCTT 1 cut(s) 779
HphI GGTGA 3 cut(s) 293, 765, 869
Hpy166II GTNNAC 4 cut(s) 746, 958, 1123, 1431
Hpy188I TCNGA 7 cut(s) 199, 244, 450, 471, 1018, 1031, 1285
Hpy188III TCNNGA 4 cut(s) 262, 664, 1036, 1355
Hpy8I GTNNAC 4 cut(s) 746, 958, 1123, 1431
HpyAV CCTTC 6 cut(s) 71, 132, 162, 551, 734, 1301
HpyCH4III ACNGT 4 cut(s) 501, 707, 991, 1258
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 6 cut(s) 308, 368, 591, 867, 958, 1248
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 463, 1056
HpyF3I CTNAG 9 cut(s) 167, 196, 210, 403, 468, 711, 782, 1404, 1416
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 7 cut(s) 265, 591, 667, 724, 975, 1044, 1307
Kzo9I GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
LmnI GCTCC 5 cut(s) 4, 116, 124, 154, 367
Lsp1109I GCAGC 2 cut(s) 292, 1046
LweI GCATC 1 cut(s) 441
MaeI CTAG 2 cut(s) 1118, 1438
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 6 cut(s) 635, 910, 926, 995, 1177, 1250
MalI GATC 6 cut(s) 35, 53, 582, 616, 803, 1326
MbiI CCGCTC 1 cut(s) 317
MboI GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
MboII GAAGA 7 cut(s) 46, 93, 173, 222, 231, 391, 652
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 3 cut(s) 580, 614, 801
MhlI GDGCHC 3 cut(s) 195, 960, 1211
MlsI TGGCCA 1 cut(s) 567
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 5 cut(s) 52, 833, 955, 1035, 1345
MmeI TCCRAC 2 cut(s) 1005, 1316
Mox20I TGGCCA 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 226
MscI TGGCCA 1 cut(s) 567
MseI TTAA 3 cut(s) 650, 684, 692
MslI CAYNNNNRTG 2 cut(s) 989, 1091
Msp20I TGGCCA 1 cut(s) 567
MspR9I CCNGG 3 cut(s) 219, 420, 627
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 1 cut(s) 1345
MvaI CCWGG 3 cut(s) 219, 420, 627
MwoI GCNNNNNNNGC 3 cut(s) 314, 463, 1056
NdeI CATATG 1 cut(s) 1213
NdeII GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
NlaIII CATG 7 cut(s) 265, 591, 667, 724, 975, 1044, 1307
NlaIV GGNNCC 7 cut(s) 6, 216, 465, 550, 606, 616, 803
NmuCI GTSAC 6 cut(s) 635, 910, 926, 995, 1177, 1250
NspI RCATGY 1 cut(s) 975
PagI TCATGA 2 cut(s) 261, 663
PceI AGGCCT 2 cut(s) 1148, 1228
PctI GAATGC 1 cut(s) 1345
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 6 cut(s) 344, 445, 657, 696, 1013, 1032
PkrI GCNGC 4 cut(s) 307, 319, 456, 1061
PleI GAGTC 5 cut(s) 51, 833, 954, 1034, 1345
PpsI GAGTC 5 cut(s) 51, 833, 954, 1034, 1345
PpuMI RGGWCCY 3 cut(s) 214, 407, 605
Psp5II RGGWCCY 3 cut(s) 214, 407, 605
Psp6I CCWGG 3 cut(s) 217, 418, 625
PspGI CCWGG 3 cut(s) 217, 418, 625
PspN4I GGNNCC 7 cut(s) 6, 216, 465, 550, 606, 616, 803
PspPI GGNCC 6 cut(s) 25, 214, 407, 464, 605, 920
PspPPI RGGWCCY 3 cut(s) 214, 407, 605
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 3 cut(s) 580, 614, 801
RsaI GTAC 2 cut(s) 747, 1267
RsaNI GTAC 2 cut(s) 746, 1266
RseI CAYNNNNRTG 2 cut(s) 989, 1091
SaqAI TTAA 3 cut(s) 650, 684, 692
SatI GCNGC 4 cut(s) 306, 318, 455, 1060
Sau3AI GATC 6 cut(s) 33, 51, 580, 614, 801, 1324
Sau96I GGNCC 6 cut(s) 25, 214, 407, 464, 605, 920
SchI GAGTC 5 cut(s) 52, 833, 955, 1035, 1345
ScrFI CCNGG 3 cut(s) 219, 420, 627
SduI GDGCHC 3 cut(s) 195, 960, 1211
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 2 cut(s) 339, 366
SinI GGWCC 4 cut(s) 25, 214, 407, 605
SmiMI CAYNNNNRTG 2 cut(s) 989, 1091
SmlI CTYRAG 2 cut(s) 64, 1353
SmoI CTYRAG 2 cut(s) 64, 1353
SpeI ACTAGT 1 cut(s) 1117
SseBI AGGCCT 2 cut(s) 1148, 1228
SsiI CCGC 5 cut(s) 317, 455, 1050, 1068, 1390
SspI AATATT 1 cut(s) 1130
SspMI CTAG 2 cut(s) 1118, 1438
StuI AGGCCT 2 cut(s) 1148, 1228
StyD4I CCNGG 3 cut(s) 217, 418, 625
TaaI ACNGT 4 cut(s) 501, 707, 991, 1258
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 1153
TatI WGTACW 2 cut(s) 745, 1265
TauI GCSGC 2 cut(s) 320, 457
TfiI GAWTC 6 cut(s) 344, 445, 657, 696, 1013, 1032
Tru1I TTAA 3 cut(s) 650, 684, 692
Tru9I TTAA 3 cut(s) 650, 684, 692
TscAI CASTG 6 cut(s) 20, 307, 506, 544, 996, 1255
TseFI GTSAC 6 cut(s) 635, 910, 926, 995, 1177, 1250
TseI GCWGC 2 cut(s) 305, 1059
Tsp45I GTSAC 6 cut(s) 635, 910, 926, 995, 1177, 1250
TspDTI ATGAA 5 cut(s) 278, 652, 737, 1121, 1320
TspRI CASTG 6 cut(s) 20, 307, 506, 544, 996, 1255
VneI GTGCAC 1 cut(s) 956
VpaK11BI GGWCC 4 cut(s) 25, 214, 407, 605
XagI CCTNNNNNAGG 1 cut(s) 1142
XceI RCATGY 1 cut(s) 975
XmiI GTMKAC 2 cut(s) 1122, 1430
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 2 cut(s) 1118, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.