Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008992

Physical Location & Seq

Genomic Coordinates Reverse (-)

8740501 .. 8741686

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGATCCATCGCCCAAGAGAACACAAAATCTGTTGCCATACACAACTCAATGATTAGCAACGGTGATGACTGCATTTCGATAGGAACTGGGTGTGCAAATGTTGATATAATGGGTGTCACTTGTGGGCCAAGTCACGGGATTAGCATTGGGAGCCTTGGCGTGCACAACTCCCAGGCATGCGTCTCCAACATCACAGTCCGCAACTCCGTCATACGTGAATCCGACAACGGTGTCCGAATCAAGACATGGCAAGGCGGGACGGGCAGCGTCTCCGGCATCCTCTTCGAGAACATCCAGATGGAGAATGTGCTCAACTGCCTGCTAGTAGACCAGTACTACTGCCTATCAAAAGCATGCCGAAACGAAACCTCAGCAGTACTAGTCACAGACTTGACCTACAGAAACATAAAAGGCACGTACGATGTGAGGAGGCCTCCCATTCACTTTGCGTGCAGTGACACCGTGGCATGCAGAAATATTATCCTCTCAGAAGTTGAGCTTTACCCATACGAAGGAGAGCTCATGGATGAGCCCTTTTGTTGGAATGCTTATGGGACCCAGGAGACTGCAACTATTCCCCCTATTGATTGCTTGCGAGAGGGGGAGCCTCAGGCTTTGGATGAGGTGTCCAAGTATACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

216

Amino Acids

23.37

Weight (kDa)

4.69

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48100
fragaria_vesca	FvH4_4g20990 FvH4_4g20990
malus_domestica	MD13G1146600.v1.1 MD16G1140500.v1.1
prunus_persica	Prupe.1G110100_v2.0.a1 Prupe.1G110100_v2.0.a1 Prupe.1G110100_v2.0.a1
pyrus_communis	pycom13g12630 pycom16g12470
rosa_chinensis	RchiOBHm_Chr4g0426531
rosa_laevigata	RLG00000007292
rosa_roxburghii	Rroxscaffold_5G00368540
rosa_rugosa	Rorug04G0212700 Rorug04G0212700 Rorug04G0212700 Rorug04G0212700
rosa_samantha	Rh4AG268200 Rh4BG274500 Rh4CG288900 Rh4DG271300
rosa_wichuraiana	Rw4G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccI	GTMKAC	2 cut(s)	330, 638
AciI	CCGC	2 cut(s)	202, 258
AclWI	GGATC	1 cut(s)	13
AfaI	GTAC	3 cut(s)	338, 381, 422
AfiI	CCNNNNNNNGG	3 cut(s)	137, 515, 543
AhlI	ACTAGT	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	174, 561
AluBI	AGCT	2 cut(s)	502, 523
AluI	AGCT	2 cut(s)	502, 523
Alw21I	GWGCWC	3 cut(s)	168, 315, 525
Alw26I	GTCTC	3 cut(s)	190, 277, 560
Alw44I	GTGCAC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	128, 434
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	128, 558
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	558
AxyI	CCTNAGG	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	525, 537
Bbv12I	GWGCWC	3 cut(s)	168, 315, 525
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	17, 295
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	176, 563
BcoDI	GTCTC	3 cut(s)	190, 277, 560
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	2 cut(s)	326, 383
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmcAI	AGTACT	2 cut(s)	338, 381
Bme1390I	CCNGG	2 cut(s)	176, 563
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	128, 558
BmiI	GGNNCC	5 cut(s)	7, 155, 559, 560, 609
BmrFI	CCNGG	2 cut(s)	176, 563
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
Bpu10I	CCTNAGC	1 cut(s)	373
BsaAI	YACGTR	2 cut(s)	218, 420
BsaJI	CCNNGG	4 cut(s)	157, 174, 465, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 515, 543
Bse1I	ACTGG	2 cut(s)	94, 334
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	176, 563
BseDI	CCNNGG	4 cut(s)	157, 174, 465, 561
BseGI	GGATG	4 cut(s)	279, 294, 535, 628
BseLI	CCNNNNNNNGG	3 cut(s)	137, 515, 543
BseMII	CTCAG	3 cut(s)	387, 504, 626
BseNI	ACTGG	2 cut(s)	94, 334
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	130, 436
BsiHKAI	GWGCWC	3 cut(s)	168, 315, 525
BsiSI	CCGG	1 cut(s)	276
BsiWI	CGTACG	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	274, 571
BslI	CCNNNNNNNGG	3 cut(s)	137, 515, 543
BsmAI	GTCTC	3 cut(s)	190, 277, 560
BsmBI	CGTCTC	2 cut(s)	190, 277
BsmFI	GGGAC	2 cut(s)	274, 571
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	130, 436
Bsp1286I	GDGCHC	4 cut(s)	168, 315, 525, 537
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	202, 258
BspANI	GGCC	2 cut(s)	130, 436
BspCNI	CTCAG	3 cut(s)	386, 503, 625
BspLI	GGNNCC	5 cut(s)	7, 155, 559, 560, 609
BspPI	GGATC	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	94, 334
BssECI	CCNNGG	4 cut(s)	157, 174, 465, 561
BssMI	GATC	1 cut(s)	5
BssNAI	GTATAC	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	157
Bst1107I	GTATAC	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	176, 563
Bst4CI	ACNGT	4 cut(s)	65, 199, 233, 466
Bst6I	CTCTTC	1 cut(s)	290
BstBAI	YACGTR	2 cut(s)	218, 420
BstC8I	GCNNGC	7 cut(s)	164, 181, 323, 358, 454, 472, 596
BstDEI	CTNAG	3 cut(s)	373, 490, 612
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	279, 294, 535, 628
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	3 cut(s)	190, 277, 560
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 264, 276
BstNI	CCWGG	2 cut(s)	176, 563
BstNSI	RCATGY	3 cut(s)	183, 360, 474
BstSCI	CCNGG	2 cut(s)	174, 561
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BstZ17I	GTATAC	1 cut(s)	639
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	130, 436
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	4 cut(s)	279, 294, 535, 628
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	7 cut(s)	164, 181, 323, 358, 454, 472, 596
Cfr13I	GGNCC	2 cut(s)	128, 558
CseI	GACGC	2 cut(s)	172, 259
Csp6I	GTAC	3 cut(s)	337, 380, 421
CviAII	CATG	5 cut(s)	180, 249, 357, 471, 526
CviJI	RGCY	8 cut(s)	130, 156, 436, 502, 523, 535, 610, 617
CviKI_1	RGCY	8 cut(s)	130, 156, 436, 502, 523, 535, 610, 617
CviQI	GTAC	3 cut(s)	337, 380, 421
DdeI	CTNAG	3 cut(s)	373, 490, 612
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	525, 537
Eco47I	GGWCC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	174, 561
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	2 cut(s)	525, 537
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	190, 277
FaeI	CATG	5 cut(s)	183, 252, 360, 474, 529
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	2 cut(s)	274, 571
FatI	CATG	5 cut(s)	179, 248, 356, 470, 525
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	2 cut(s)	330, 638
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	4 cut(s)	266, 281, 542, 635
FriOI	GRGCYC	2 cut(s)	525, 537
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	2 cut(s)	326, 383
GluI	GCNGC	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	130, 436
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	172, 259
Hin1II	CATG	5 cut(s)	183, 252, 360, 474, 529
HinfI	GANTC	2 cut(s)	221, 240
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	166, 331, 639
Hpy188I	TCNGA	3 cut(s)	226, 239, 493
Hpy188III	TCNNGA	3 cut(s)	244, 289, 298
Hpy8I	GTNNAC	3 cut(s)	166, 331, 639
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	4 cut(s)	65, 199, 233, 466
HpyCH4IV	ACGT	2 cut(s)	217, 419
HpyCH4V	TGCA	6 cut(s)	75, 98, 166, 456, 474, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 264, 276
HpyF3I	CTNAG	3 cut(s)	373, 490, 612
HpySE526I	ACGT	2 cut(s)	217, 419
Hsp92II	CATG	5 cut(s)	183, 252, 360, 474, 529
KflI	GGGWCCC	1 cut(s)	558
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	153, 607
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	326, 383
MaeII	ACGT	2 cut(s)	217, 419
MaeIII	GTNAC	4 cut(s)	118, 134, 385, 458
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	4 cut(s)	168, 315, 525, 537
MmeI	TCCRAC	3 cut(s)	213, 249, 524
MnlI	CCTC	9 cut(s)	293, 382, 423, 426, 447, 497, 595, 619, 621
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	176, 563
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	176, 563
MwoI	GCNNNNNNNGC	3 cut(s)	153, 264, 276
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	183, 252, 360, 474, 529
NlaIV	GGNNCC	5 cut(s)	7, 155, 559, 560, 609
NmuCI	GTSAC	4 cut(s)	118, 134, 385, 458
NspI	RCATGY	3 cut(s)	183, 360, 474
PaeI	GCATGC	3 cut(s)	183, 360, 474
PceI	AGGCCT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	221, 240
Pfl23II	CGTACG	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	269
Ppu21I	YACGTR	2 cut(s)	218, 420
PpuMI	RGGWCCY	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	174, 561
PspGI	CCWGG	2 cut(s)	174, 561
PspLI	CGTACG	1 cut(s)	420
PspN4I	GGNNCC	5 cut(s)	7, 155, 559, 560, 609
PspPI	GGNCC	2 cut(s)	128, 558
PspPPI	RGGWCCY	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	3 cut(s)	338, 381, 422
RsaNI	GTAC	3 cut(s)	337, 380, 421
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	525
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	128, 558
ScaI	AGTACT	2 cut(s)	338, 381
ScrFI	CCNGG	2 cut(s)	176, 563
SduI	GDGCHC	4 cut(s)	168, 315, 525, 537
SetI	ASST	7 cut(s)	220, 374, 401, 422, 504, 525, 630
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	382
SphI	GCATGC	3 cut(s)	183, 360, 474
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	2 cut(s)	202, 258
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	326, 383
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	174, 561
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	4 cut(s)	65, 199, 233, 466
TaiI	ACGT	2 cut(s)	220, 422
TaqI	TCGA	2 cut(s)	80, 288
TatI	WGTACW	2 cut(s)	336, 379
TfiI	GAWTC	2 cut(s)	221, 240
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	4 cut(s)	118, 134, 385, 458
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	4 cut(s)	118, 134, 385, 458
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	558
XceI	RCATGY	3 cut(s)	183, 360, 474
XmiI	GTMKAC	2 cut(s)	330, 638
XspI	CTAG	2 cut(s)	326, 383
ZrmI	AGTACT	2 cut(s)	338, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.