Prupe.1G117500_v2.0.a1

Iron-Sulfur binding protein C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014717
Physical Location & Seq
Reverse (-)
9241831 .. 9244927
3097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G117500.2

Sequence Viewer

Length: 1278 bp
ATGGCTTTGAGCTTTTCCTGCAGTGCTTCTATTTCTCCTCAGCACCAAGCAAAAGTGAACTTTAAAAGCAACAAAGGCCTTGAAGACGTGAGGAATCTCATAAAAACTGTTGGGGTTCCATCAATAACGTGCTCGCCAGTAAAATCTCTTCAAAATGGCAACTGGGTCAAGCTCATATGTGGTGCAAGCTTTGAGGATGTGGTTGATATAAGGAATCTTTCTCTGGTTTACGCTCTTGCAGGAGTTGATTGCATAGACTGTGCAGCAGATGTCTCAGTTGTGAATGCAGTAAACGAGGGGATTGATGCAGCAATTGAGATTCTCCCCCTTCGAAGGCCTTGGGTCATGATCAGTGTTAATGATGATGAGGATCTTCACTTCCGCAAGGCCGAATTTGATCCAGAGGATTGTCCCCTTGACTGTTCAAAGCCTTGTGAGAGAGTTTGTCCTGCTGATGCAATATCATTGGAGGCTCAAAATTCAACAACACAACTCCCTTTTGATACCAATGCATCTGGTGCATTTAAGGGTGGAGTTCTAACTGAACGCTGTTATGGCTGCGGACGTTGCATTCCAGTTTGCCCATATGATAAAATAAGAGTGACCTCATATATAAGAGAGGCTGCTACAACCTCTGAACTTCTCAAAAGAAATGACGTTGATGCTGTAGAGATTCATACAACTGGAAGGCAGATTGCTCCATTTAAAGAACTTTGGGATGGTTTGGCCGACTCGATCAAATATTTGAGATTAGCAGCAGTTAGCTTACCTGATATTGGGGAGGCAACTGTATCATCAATGAAGGATATGTACTCAGTTATGGAACCAGATCTATGTTGCTTCAATCTATGGCAGTTGGATGGCCGCCCCATGAGTGGAGATATTGGTCGAGGTGCCACAAGAGAATCGATTGCTTTTGCTCTTCGTTTGGCTGCAATAAAAGATAGGCCTCATGGTTTTCTTCAACTGGCGGGTGGCACCAATGCTCACACAGTTGATGGGTTGAAGAAAGTCGGACTTTTCCAAACGACATCCTTCCATAGAAATTCAAGGGATGAAACATTAACTGGAACGTCTAGTTCAGTGCATGCTATAATCGGTGGTGTTGCTTATGGTGGCTATGCACGAAAGATTGTGGGAAGAATCCTAAGTAATATGCAATCACAGCATGGCATTGCTAGTATGGAGGATTATCCAGACCATCTCCTTCAGGCACTTAGAGAGGCCCTTTCTATTGTCGGAACTGCCAAGTCTTTTCCCATTTCAAATTCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer4 Fer4_9 LdpA_C

Protein Analysis

426

Amino Acids

46.0

Weight (kDa)

5.65

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730
malus_domestica MD16G1154200.v1.1
prunus_persica Prupe.1G117500_v2.0.a1 Prupe.1G117500_v2.0.a1
pyrus_communis pycom16g13060
rosa_chinensis RchiOBHm_Chr4g0425231
rosa_laevigata RLG00000007384
rosa_multiflora Rmu_sc0004716.1_g000005
rosa_roxburghii Rroxscaffold_5G00367260
rosa_rugosa Rorug04G0202000
rosa_samantha Rh4BG264400 Rh4DG260500
rosa_wichuraiana Rw4G022410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 893, 977
AciI CCGC 4 cut(s) 382, 561, 865, 971
AclWI GGATC 2 cut(s) 378, 392
AcoI YGGCCR 2 cut(s) 726, 862
AcsI RAATTY 4 cut(s) 392, 478, 1045, 1267
AcuI CTGAAG 1 cut(s) 1193
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 3 cut(s) 333, 776, 875
AgsI TTSAA 9 cut(s) 83, 152, 426, 483, 844, 965, 1006, 1050, 1266
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 4 cut(s) 12, 172, 189, 765
AluI AGCT 4 cut(s) 12, 172, 189, 765
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 378, 392
AoxI GGCC 7 cut(s) 76, 335, 387, 726, 862, 947, 1224
ApeKI GCWGC 6 cut(s) 263, 308, 558, 623, 755, 932
ApoI RAATTY 4 cut(s) 392, 478, 1045, 1267
AspS9I GGNCC 1 cut(s) 1225
AsuII TTCGAA 1 cut(s) 331
BanI GGYRCC 2 cut(s) 893, 977
BarI GAAGNNNNNNTAC 4 cut(s) 132, 164, 794, 826
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 6 cut(s) 275, 320, 545, 610, 767, 919
BccI CCATC 5 cut(s) 127, 713, 854, 992, 1209
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 1077, 1179
BfmI CTRYAG 2 cut(s) 19, 666
BglII AGATCT 1 cut(s) 829
BisI GCNGC 7 cut(s) 264, 309, 559, 624, 756, 865, 933
BlsI GCNGC 7 cut(s) 265, 310, 560, 625, 757, 866, 934
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 1225
BmiI GGNNCC 4 cut(s) 117, 825, 895, 979
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 4 cut(s) 295, 445, 521, 652
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 776, 875
Bse1I ACTGG 6 cut(s) 137, 167, 575, 688, 972, 1072
Bse3DI GCAATG 1 cut(s) 1173
Bse8I GATNNNNATC 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 908
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 5 cut(s) 202, 724, 865, 1031, 1060
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 333, 776, 875
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 3 cut(s) 53, 288, 828
BseNI ACTGG 6 cut(s) 137, 167, 575, 688, 972, 1072
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 6 cut(s) 275, 320, 545, 610, 767, 919
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 7 cut(s) 78, 337, 389, 728, 864, 949, 1226
BshNI GGYRCC 2 cut(s) 893, 977
BshVI ATCGAT 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 333, 776, 875
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 2 cut(s) 289, 570
BsnI GGCC 7 cut(s) 78, 337, 389, 728, 864, 949, 1226
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 348, 370, 397, 735, 829
BspACI CCGC 4 cut(s) 382, 561, 865, 971
BspANI GGCC 7 cut(s) 78, 337, 389, 728, 864, 949, 1226
BspCNI CTCAG 3 cut(s) 52, 287, 827
BspDI ATCGAT 1 cut(s) 908
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 117, 825, 895, 979
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 2 cut(s) 378, 392
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 331
BspT107I GGYRCC 2 cut(s) 893, 977
BsrDI GCAATG 1 cut(s) 1173
BsrI ACTGG 6 cut(s) 137, 167, 575, 688, 972, 1072
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 5 cut(s) 348, 370, 397, 735, 829
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 5 cut(s) 109, 260, 422, 790, 994
Bst6I CTCTTC 2 cut(s) 153, 927
BstAPI GCANNNNNTGC 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 134, 187, 1089
BstDEI CTNAG 5 cut(s) 39, 274, 814, 1148, 1217
BstF5I GGATG 5 cut(s) 202, 724, 865, 1031, 1060
BstKTI GATC 5 cut(s) 351, 373, 400, 738, 832
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 5 cut(s) 348, 370, 397, 735, 829
BstMWI GCNNNNNNNGC 6 cut(s) 18, 75, 518, 555, 567, 1165
BstNSI RCATGY 1 cut(s) 1091
BstSFI CTRYAG 2 cut(s) 19, 666
BstV1I GCAGC 6 cut(s) 275, 320, 545, 610, 767, 919
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 370, 829
BstYI RGATCY 2 cut(s) 370, 829
Bsu15I ATCGAT 1 cut(s) 908
BsuRI GGCC 7 cut(s) 78, 337, 389, 728, 864, 949, 1226
BsuTUI ATCGAT 1 cut(s) 908
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 5 cut(s) 202, 724, 865, 1031, 1060
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 28, 358, 1089
Cac8I GCNNGC 3 cut(s) 134, 187, 1089
CciI TCATGA 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 1225
ClaI ATCGAT 1 cut(s) 908
Csp6I GTAC 1 cut(s) 811
CviAII CATG 5 cut(s) 346, 871, 953, 1088, 1169
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 5 cut(s) 39, 274, 814, 1148, 1217
DpnI GATC 5 cut(s) 350, 372, 399, 737, 831
DpnII GATC 5 cut(s) 348, 370, 397, 735, 829
DraI TTTAAA 2 cut(s) 64, 706
EaeI YGGCCR 2 cut(s) 726, 862
Eam1104I CTCTTC 2 cut(s) 153, 927
EarI CTCTTC 2 cut(s) 153, 927
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 3 cut(s) 78, 337, 949
Eco57I CTGAAG 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 1225
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 5 cut(s) 349, 874, 956, 1091, 1172
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 396
FatI CATG 5 cut(s) 345, 870, 952, 1087, 1168
FauI CCCGC 1 cut(s) 964
FauNDI CATATG 2 cut(s) 176, 586
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 7 cut(s) 264, 309, 559, 624, 756, 865, 933
FokI GGATG 5 cut(s) 209, 731, 872, 1018, 1067
Fsp4HI GCNGC 7 cut(s) 264, 309, 559, 624, 756, 865, 933
FspBI CTAG 2 cut(s) 1077, 1179
GluI GCNGC 7 cut(s) 264, 309, 559, 624, 756, 865, 933
HaeIII GGCC 7 cut(s) 78, 337, 389, 728, 864, 949, 1226
Hin1II CATG 5 cut(s) 349, 874, 956, 1091, 1172
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 7 cut(s) 94, 214, 319, 673, 731, 905, 1143
Hpy166II GTNNAC 3 cut(s) 58, 229, 292
Hpy188I TCNGA 3 cut(s) 637, 1016, 1241
Hpy188III TCNNGA 3 cut(s) 346, 401, 1196
Hpy8I GTNNAC 3 cut(s) 58, 229, 292
HpyAV CCTTC 6 cut(s) 327, 338, 681, 796, 1045, 1217
HpyCH4III ACNGT 5 cut(s) 109, 260, 422, 790, 994
HpyCH4IV ACGT 5 cut(s) 87, 128, 565, 657, 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 75, 518, 555, 567, 1165
HpyF3I CTNAG 5 cut(s) 39, 274, 814, 1148, 1217
HpySE526I ACGT 5 cut(s) 87, 128, 565, 657, 1073
Hsp92II CATG 5 cut(s) 349, 874, 956, 1091, 1172
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 5 cut(s) 348, 370, 397, 735, 829
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 6 cut(s) 275, 320, 545, 610, 767, 919
LweI GCATC 4 cut(s) 295, 445, 521, 652
MaeI CTAG 2 cut(s) 1077, 1179
MaeII ACGT 5 cut(s) 87, 128, 565, 657, 1073
MaeIII GTNAC 1 cut(s) 601
MalI GATC 5 cut(s) 350, 372, 399, 737, 831
MboI GATC 5 cut(s) 348, 370, 397, 735, 829
MboII GAAGA 7 cut(s) 95, 140, 365, 914, 953, 1018, 1152
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 370, 829
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 5 cut(s) 312, 392, 478, 1045, 1267
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 3 cut(s) 837, 994, 1219
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 5 cut(s) 63, 357, 525, 705, 1064
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 289, 570
MwoI GCNNNNNNNGC 6 cut(s) 18, 75, 518, 555, 567, 1165
NdeI CATATG 2 cut(s) 176, 586
NdeII GATC 5 cut(s) 348, 370, 397, 735, 829
NlaIII CATG 5 cut(s) 349, 874, 956, 1091, 1172
NlaIV GGNNCC 4 cut(s) 117, 825, 895, 979
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 1 cut(s) 1091
NspV TTCGAA 1 cut(s) 331
PaeI GCATGC 1 cut(s) 1091
PagI TCATGA 1 cut(s) 345
PceI AGGCCT 3 cut(s) 78, 337, 949
PciSI GCTCTTC 1 cut(s) 927
PctI GAATGC 2 cut(s) 289, 570
PfeI GAWTC 6 cut(s) 94, 214, 319, 673, 905, 1143
PkrI GCNGC 7 cut(s) 265, 310, 560, 625, 757, 866, 934
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PspN4I GGNNCC 4 cut(s) 117, 825, 895, 979
PspPI GGNCC 1 cut(s) 1225
PstI CTGCAG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 370, 829
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 63, 357, 525, 705, 1064
SatI GCNGC 7 cut(s) 264, 309, 559, 624, 756, 865, 933
Sau3AI GATC 5 cut(s) 348, 370, 397, 735, 829
Sau96I GGNCC 1 cut(s) 1225
SchI GAGTC 1 cut(s) 725
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 4 cut(s) 295, 445, 521, 652
SfcI CTRYAG 2 cut(s) 19, 666
SfuI TTCGAA 1 cut(s) 331
SphI GCATGC 1 cut(s) 1091
Sse9I AATT 5 cut(s) 312, 392, 478, 1045, 1267
SseBI AGGCCT 3 cut(s) 78, 337, 949
SsiI CCGC 4 cut(s) 382, 561, 865, 971
SspI AATATT 1 cut(s) 743
SspMI CTAG 2 cut(s) 1077, 1179
StuI AGGCCT 3 cut(s) 78, 337, 949
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 5 cut(s) 109, 260, 422, 790, 994
TaiI ACGT 5 cut(s) 90, 131, 568, 660, 1076
TaqI TCGA 4 cut(s) 331, 734, 889, 908
TasI AATT 5 cut(s) 312, 392, 478, 1045, 1267
TatI WGTACW 1 cut(s) 810
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 6 cut(s) 94, 214, 319, 673, 905, 1143
Tru1I TTAA 5 cut(s) 63, 357, 525, 705, 1064
Tru9I TTAA 5 cut(s) 63, 357, 525, 705, 1064
TscAI CASTG 3 cut(s) 28, 358, 1089
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 6 cut(s) 263, 308, 558, 623, 755, 932
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 665, 815, 1071
TspRI CASTG 3 cut(s) 28, 358, 1089
XapI RAATTY 4 cut(s) 392, 478, 1045, 1267
XceI RCATGY 1 cut(s) 1091
XspI CTAG 2 cut(s) 1077, 1179
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.