Prupe.1G118600_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016309
Physical Location & Seq
Forward (+)
9308688 .. 9311471
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G118600.1

Sequence Viewer

Length: 1323 bp
ATGGAAAACAACAAGATATCAGGGAGACAGCCAAAATTAGGAGACCATGTCTCGATTGAAATCACTCCTGAGCATGATGAACTTGTATCTTCTATCAAGGAAAAGATGGAAAACATTGCTGTATCAGTCTGTATCTTCAGAGTCCCCCAGGAACTTCGCGAGCATAACGAAAAGAAATATACTCCTGATCATGTTTCCATTGGTCCTTTGCACCGTGCAAAAGAGACTAGAGTGCCGCAAGATGATAAGTGGCGCTATTGTTATGCACTCCTCAATCGAAAACCGAATTTAGAAGCAACCTTGAACATCTGCGTGAAAGCTCTTCGAGAGTTGGAGCACAAAGCACGAAGATGCTATGAGGGAGAGATTGATATCAGCAGCAGTGATGACTTTGTTCAATTGTTGCTAATTGATGGCTGCTTCATCATTGAGCTATTTCTGAAGTTTGCCTACAAGAGCCTTAGGTCCCGGAGAGACCCTATATTCACCAAGCCTGGGATGCTTTTCGAAATGAGACGTGACATGGCATTACTAGAAAACCAAATTCCTTTCTTTGTTGTTCAAAGGCTATTTCAATTAGTACCACTTCCTCCAAAATGCAACGAGCCACTCAATGAGCTCGCGTCCCGGTTCTACAGAAGAATAATACCAGGAGATGATGAGCATGTTATCAAAGACAAATTCAATCAAGAAGGGTATCATTTACTTGATCTAATTCGGCATTGTATCCTCCCAACAAATCCGAAATTGCATCTGAAAGAAAATGTGCCTCAAAAACATTTGGATTGTGCCAAAAAGCTTAAAAGTGCTGGCATTAAATTCAAGACGGCTACAAGCCAAAGTTTCTTGGACATCAAGTTTGCTCATGGTGTTTTCAAAATCCCACCTCTTGAAGTCCACCATTGCACAGAAGCACTTCTTAGGAACCTCATTGCACTTGAGCAGCGTCAGCTTGATGATACCATACAGCATGTCACATCTTATGCCTTCCTCATGGGGTGCCTCATCACCTCCGAGAAGGATGTAAAATTACTTCGGCGGAGACAGATTCTCATCCACGATGAGAAGAAGGATAAAGAGGTTTTTCAAATGTTCGAGAAGCTTTGCAAGGAGATCAAGCTGATGGATTTCTACTATGGGAGGCTTTTTCAAGATGTGGCTGAATACAAGAGCAAAAGTTGGCATGAAAAGCGGCAGAATTTGGACACACATCTCAAAACTCCGACTTCAGTTATGGTGTTTGTTGTTGCAATGTTGCTTCTTCTTCTCACCTTTGTTGGAGCTTGCTTTTCCATACTCTCCTTTGCTCTCCACCATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

441

Amino Acids

51.45

Weight (kDa)

8.75

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19590
malus_domestica MD16G1154900.v1.1
prunus_persica Prupe.1G118600_v2.0.a1
pyrus_communis pycom16g13130
rosa_chinensis RchiOBHm_Chr4g0424851
rosa_laevigata RLG00000007415
rosa_multiflora Rmu_sc0006754.1_g000008
rosa_roxburghii Rroxscaffold_5G00367070
rosa_rugosa Rorug04G0199600 Rorug04G0199700
rosa_samantha Rh4AG257400 Rh4BG262800 Rh4CG273700 Rh4DG258500
rosa_wichuraiana Rw4G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 999
AccII CGCG 2 cut(s) 159, 623
AciI CCGC 3 cut(s) 236, 1039, 1192
AcsI RAATTY 5 cut(s) 286, 543, 680, 818, 1198
AcuI CTGAAG 3 cut(s) 121, 461, 1212
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 2 cut(s) 38, 495
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 3 cut(s) 147, 493, 649
AluBI AGCT 8 cut(s) 320, 433, 619, 799, 952, 1102, 1120, 1283
AluI AGCT 8 cut(s) 320, 433, 619, 799, 952, 1102, 1120, 1283
Alw21I GWGCWC 2 cut(s) 339, 621
Alw26I GTCTC 7 cut(s) 19, 36, 55, 218, 468, 508, 1036
ApeKI GCWGC 3 cut(s) 378, 417, 943
ApoI RAATTY 5 cut(s) 286, 543, 680, 818, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
Asp700I GAANNNNTTC 1 cut(s) 915
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 203, 465
AsuC2I CCSGG 2 cut(s) 469, 628
AsuHPI GGTGA 3 cut(s) 478, 1000, 1261
AsuII TTCGAA 1 cut(s) 507
AvaII GGWCC 2 cut(s) 203, 465
AxyI CCTNAGG 1 cut(s) 461
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 1 cut(s) 621
BarI GAAGNNNNNNTAC 4 cut(s) 434, 466, 1017, 1049
Bbv12I GWGCWC 2 cut(s) 339, 621
BbvI GCAGC 3 cut(s) 390, 404, 955
BccI CCATC 3 cut(s) 100, 407, 1117
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 3 cut(s) 149, 495, 651
BciVI GTATCC 1 cut(s) 737
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 2 cut(s) 469, 628
BcoDI GTCTC 7 cut(s) 19, 36, 55, 218, 468, 508, 1036
BfaI CTAG 2 cut(s) 228, 533
BfmI CTRYAG 1 cut(s) 634
BfoI RGCGCY 1 cut(s) 256
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 5 cut(s) 236, 379, 418, 944, 1193
BlsI GCNGC 5 cut(s) 237, 380, 419, 945, 1194
Bme1390I CCNGG 5 cut(s) 149, 469, 495, 628, 651
Bme18I GGWCC 2 cut(s) 203, 465
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 203, 465
BmiI GGNNCC 3 cut(s) 467, 926, 1001
BmrFI CCNGG 5 cut(s) 149, 469, 495, 628, 651
BmsI GCATC 3 cut(s) 341, 489, 760
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 469, 628
BsaBI GATNNNNATC 3 cut(s) 59, 371, 1052
BsaI GGTCTC 2 cut(s) 36, 468
BsaJI CCNNGG 2 cut(s) 147, 494
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 495
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 4 cut(s) 114, 901, 930, 1257
Bse8I GATNNNNATC 3 cut(s) 59, 371, 1052
BseBI CCWGG 3 cut(s) 149, 495, 651
BseDI CCNNGG 2 cut(s) 147, 494
BseGI GGATG 3 cut(s) 504, 1027, 1053
BseJI GATNNNNATC 3 cut(s) 59, 371, 1052
BseLI CCNNNNNNNGG 2 cut(s) 38, 495
BseMI GCAATG 4 cut(s) 114, 901, 930, 1257
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 390, 404, 955
Bsh1236I CGCG 2 cut(s) 159, 623
BshNI GGYRCC 1 cut(s) 999
BsiHKAI GWGCWC 2 cut(s) 339, 621
BsiSI CCGG 2 cut(s) 469, 628
BslFI GGGAC 3 cut(s) 128, 451, 610
BslI CCNNNNNNNGG 2 cut(s) 38, 495
BsmAI GTCTC 7 cut(s) 19, 36, 55, 218, 468, 508, 1036
BsmBI CGTCTC 1 cut(s) 508
BsmFI GGGAC 3 cut(s) 128, 451, 610
Bso31I GGTCTC 2 cut(s) 36, 468
Bsp119I TTCGAA 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 339, 621
Bsp143I GATC 3 cut(s) 187, 709, 1113
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 3 cut(s) 236, 1039, 1192
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 2 cut(s) 159, 623
BspLI GGNNCC 3 cut(s) 467, 926, 1001
BspQI GCTCTTC 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 999
BspTNI GGTCTC 2 cut(s) 36, 468
BsrDI GCAATG 4 cut(s) 114, 901, 930, 1257
BssECI CCNNGG 2 cut(s) 147, 494
BssMI GATC 3 cut(s) 187, 709, 1113
Bst2UI CCWGG 3 cut(s) 149, 495, 651
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 4 cut(s) 161, 621, 811, 1285
BstDEI CTNAG 3 cut(s) 69, 461, 920
BstF5I GGATG 3 cut(s) 504, 1027, 1053
BstFNI CGCG 2 cut(s) 159, 623
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 3 cut(s) 190, 712, 1116
BstMAI GTCTC 7 cut(s) 19, 36, 55, 218, 468, 508, 1036
BstMBI GATC 3 cut(s) 187, 709, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 499, 949, 1189
BstNI CCWGG 3 cut(s) 149, 495, 651
BstNSI RCATGY 2 cut(s) 668, 974
BstSCI CCNGG 5 cut(s) 147, 467, 493, 626, 649
BstSFI CTRYAG 1 cut(s) 634
BstUI CGCG 2 cut(s) 159, 623
BstV1I GCAGC 3 cut(s) 390, 404, 955
Bsu36I CCTNAGG 1 cut(s) 461
BsuI GTATCC 1 cut(s) 737
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 3 cut(s) 504, 1027, 1053
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
BtuMI TCGCGA 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 161, 621, 811, 1285
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 203, 465
CseI GACGC 2 cut(s) 612, 935
Csp6I GTAC 1 cut(s) 581
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 3 cut(s) 69, 461, 920
DpnI GATC 3 cut(s) 189, 711, 1115
DpnII GATC 3 cut(s) 187, 709, 1113
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 1054
Ecl136II GAGCTC 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 36, 468
Eco32I GATATC 2 cut(s) 18, 373
Eco47I GGWCC 2 cut(s) 203, 465
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 3 cut(s) 121, 461, 1212
Eco81I CCTNAGG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 147, 493, 649
EcoRV GATATC 2 cut(s) 18, 373
EcoT38I GRGCYC 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 508
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 3 cut(s) 128, 451, 610
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 5 cut(s) 236, 379, 418, 944, 1193
FokI GGATG 3 cut(s) 511, 1034, 1040
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 5 cut(s) 236, 379, 418, 944, 1193
FspBI CTAG 2 cut(s) 228, 533
GlaI GCGC 1 cut(s) 254
GluI GCNGC 5 cut(s) 236, 379, 418, 944, 1193
HaeII RGCGCY 1 cut(s) 256
HapII CCGG 2 cut(s) 469, 628
HgaI GACGC 2 cut(s) 612, 935
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 797, 1100
HinfI GANTC 2 cut(s) 141, 1048
HpaII CCGG 2 cut(s) 469, 628
HphI GGTGA 3 cut(s) 478, 1000, 1261
Hpy166II GTNNAC 1 cut(s) 898
Hpy188I TCNGA 6 cut(s) 140, 441, 744, 756, 1015, 1224
Hpy8I GTNNAC 1 cut(s) 898
HpyAV CCTTC 4 cut(s) 686, 997, 1012, 1063
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 9 cut(s) 211, 218, 266, 600, 751, 906, 935, 1107, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 499, 949, 1189
HpyF3I CTNAG 3 cut(s) 69, 461, 920
HpySE526I ACGT 1 cut(s) 517
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 709, 1113
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 334, 1280
Lsp1109I GCAGC 3 cut(s) 390, 404, 955
LweI GCATC 3 cut(s) 341, 489, 760
MaeI CTAG 2 cut(s) 228, 533
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 2 cut(s) 518, 973
MalI GATC 3 cut(s) 189, 711, 1115
MboI GATC 3 cut(s) 187, 709, 1113
MboII GAAGA 8 cut(s) 81, 127, 314, 360, 651, 1078, 1253, 1256
MfeI CAATTG 1 cut(s) 398
MhlI GDGCHC 2 cut(s) 339, 621
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 3 cut(s) 312, 1247, 1258
MroXI GAANNNNTTC 1 cut(s) 915
MseI TTAA 2 cut(s) 801, 816
MslI CAYNNNNRTG 2 cut(s) 311, 349
MspI CCGG 2 cut(s) 469, 628
MspR9I CCNGG 5 cut(s) 149, 469, 495, 628, 651
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 3 cut(s) 149, 495, 651
MvnI CGCG 2 cut(s) 159, 623
MwoI GCNNNNNNNGC 3 cut(s) 499, 949, 1189
NciI CCSGG 2 cut(s) 469, 628
NdeII GATC 3 cut(s) 187, 709, 1113
NlaIV GGNNCC 3 cut(s) 467, 926, 1001
NmuCI GTSAC 2 cut(s) 518, 973
NruI TCGCGA 1 cut(s) 159
NspI RCATGY 2 cut(s) 668, 974
NspV TTCGAA 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 915
PfeI GAWTC 1 cut(s) 1048
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 467
PkrI GCNGC 5 cut(s) 237, 380, 419, 945, 1194
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 147, 493, 649
PspGI CCWGG 3 cut(s) 147, 493, 649
PspN4I GGNNCC 3 cut(s) 467, 926, 1001
PspPI GGNCC 2 cut(s) 203, 465
PspPPI RGGWCCY 1 cut(s) 465
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 159
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 2 cut(s) 311, 349
SacI GAGCTC 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 801, 816
SatI GCNGC 5 cut(s) 236, 379, 418, 944, 1193
Sau3AI GATC 3 cut(s) 187, 709, 1113
Sau96I GGNCC 2 cut(s) 203, 465
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 5 cut(s) 149, 469, 495, 628, 651
SduI GDGCHC 2 cut(s) 339, 621
SfaNI GCATC 3 cut(s) 341, 489, 760
SfcI CTRYAG 1 cut(s) 634
SfuI TTCGAA 1 cut(s) 507
SinI GGWCC 2 cut(s) 203, 465
SmiMI CAYNNNNRTG 2 cut(s) 311, 349
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SsiI CCGC 3 cut(s) 236, 1039, 1192
SspMI CTAG 2 cut(s) 228, 533
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 5 cut(s) 147, 467, 493, 626, 649
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 520
TaqI TCGA 5 cut(s) 53, 277, 325, 507, 1095
TauI GCSGC 2 cut(s) 238, 1195
TfiI GAWTC 1 cut(s) 1048
Tru1I TTAA 2 cut(s) 801, 816
Tru9I TTAA 2 cut(s) 801, 816
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 518, 973
TseI GCWGC 3 cut(s) 378, 417, 943
Tsp45I GTSAC 2 cut(s) 518, 973
TspDTI ATGAA 3 cut(s) 93, 412, 1200
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 203, 465
XapI RAATTY 5 cut(s) 286, 543, 680, 818, 1198
XceI RCATGY 2 cut(s) 668, 974
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 2 cut(s) 228, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.