Rorug04G0199600

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016309
Physical Location & Seq
Forward (+)
34747800 .. 34749667
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0199600.1

Sequence Viewer

Length: 1485 bp
ATGGAGAATCCACTCATTGCTAAGTGCTCTCAGGACCTCTGGTTTGGTATACTCATCTCCTTCTTTTTTTGCTTTGTATTGCTTTCATCTGATTATTCAACCTTCTTGGGTGTCAACAATGGTGCCAATCTTTTAGTGAATAAACAAGGTCACCCAGTTGGGTCTGTGAAGAACCAAACCGTTTTGATTACTTCCCAGTCTAACCCAGATTCTTGTTCTGGTCGTTATGTTTATATACATGATGATCTTCCTTCCAAGTTCAACTCTGATTTGCTCAAGAACTGTAGGCTTCTTACTAGAGGCACTGACAAGCCCAATTTGTGTCCTTACTTTGAGAATTGGGGTTTTGGTCCTGAAATTGAAAACACTGAAGGGGTTTTAGCCAACAAGAGTTGGTTCTCCACAAACCAGTTCACTCTAGAAGTCATATTCCACAACAAGATGAAGCAGTACAAGTGTTTGACAAAAAACTCATCTCTGGCTTCAGCCATTTATGTGCCATTCTATGCTGGCCTTGATGCCAGTCTCCATTTGTGGGATTCCAATCTCACGGTGAGAGACGCTTCGGCTAGAGATCTCAATGGTTGGCTTTCGAAGAGGCCCGAATGGAAGGCGATGTGGGGGAGAGACCATTTCTTGGTTGCAGGGAGGATTTCATGGGATTTCAGGAGGCAAACGGATGAGGTTTCGGATTGGGGGAGTAAACTCAGGTTCTTGCCGGAATCGATGAACATGAGTATGTTGTCAGTTGAAGGAAGCTCATGGAGAAATGACTATGCTATTCCATACCCAACAAACTTTCATCCTGCAAAGGATAGCGATGTGGTTCAATGGCAGAACAGAATGCGAAAACTAGACAGGCCTTACTTGTTCACTTTTGTTGGTGCTCCAAGGCCTGACCAGCAAAACTCGATTCGGGGGAAGATTATTGATCAGTGCCTAGCTTCAAGTGTTTGCAAGTTGATAGATTGCAGTTCTGGTGGGATTAAGTGTGACAACCCCGCTAGTGTTATGAGGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTACAGGGGATTCATACACTAGGAAGTCAGCTTTTGACTCGATTCTGGCAGGTTGTATTCCGGTTTTCTTTCATCCGGGTACTGCCTATTCGCAATATTTATGGCACTTACCAAAGAATCATACCAAGTATTCGGTGTTTATTCCGGTGAGGTATGTAGAAGATTTGAAAGAAAGCCTCATTGAGAGAACCTTGGTTGGAATTTCAGAGGAGAAAGAATTGGAAATGAGAGAAGAGGTTATAAGGCTAATACCGAAGCTGGTGTATGCAGATCCCATGTCAAGATTAGAGACCGAAGATGCATTTGATTTATCTGTCAAGGGAATTCTTGAGACGATAGAGAATGTTAGGAAGGTGATTAGAGAAGGAAGGGATCCTAGCATTGGTTTTGCAGATGAGGATAGTTACAAGTACACATTCCCAAAGACATTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

494

Amino Acids

56.43

Weight (kDa)

6.53

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 71 - 407 5.8e-83 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19590
malus_domestica MD16G1154900.v1.1
prunus_persica Prupe.1G118600_v2.0.a1
pyrus_communis pycom16g13130
rosa_chinensis RchiOBHm_Chr4g0424851
rosa_laevigata RLG00000007415
rosa_multiflora Rmu_sc0006754.1_g000008
rosa_roxburghii Rroxscaffold_5G00367070
rosa_rugosa Rorug04G0199600 Rorug04G0199700
rosa_samantha Rh4AG257400 Rh4BG262800 Rh4CG273700 Rh4DG258500
rosa_wichuraiana Rw4G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1289
Acc36I ACCTGC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 49
AciI CCGC 1 cut(s) 1002
AclWI GGATC 3 cut(s) 1313, 1415, 1428
AcsI RAATTY 2 cut(s) 1248, 1371
AcuI CTGAAG 2 cut(s) 390, 468
AfaI GTAC 3 cut(s) 452, 1129, 1460
AfiI CCNNNNNNNGG 3 cut(s) 535, 637, 1430
AgsI TTSAA 7 cut(s) 99, 262, 362, 752, 830, 948, 1216
AluBI AGCT 5 cut(s) 759, 944, 1029, 1079, 1306
AluI AGCT 5 cut(s) 759, 944, 1029, 1079, 1306
Alw21I GWGCWC 3 cut(s) 29, 889, 1031
Alw26I GTCTC 5 cut(s) 530, 552, 621, 1331, 1373
AlwI GGATC 3 cut(s) 1313, 1415, 1428
AoxI GGCC 4 cut(s) 511, 599, 860, 893
ApeKI GCWGC 1 cut(s) 1045
ApoI RAATTY 2 cut(s) 1248, 1371
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspS9I GGNCC 3 cut(s) 34, 350, 600
AsuC2I CCSGG 1 cut(s) 1125
AsuHPI GGTGA 4 cut(s) 143, 565, 1207, 1414
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 2 cut(s) 34, 350
BamHI GGATCC 1 cut(s) 1420
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 1031
Bbv12I GWGCWC 3 cut(s) 29, 889, 1031
BbvI GCAGC 1 cut(s) 1057
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 5 cut(s) 530, 552, 621, 1331, 1373
BfaI CTAG 8 cut(s) 297, 419, 570, 854, 941, 1005, 1068, 1425
BfmI CTRYAG 2 cut(s) 283, 1050
BfuAI ACCTGC 1 cut(s) 1088
BglII AGATCT 1 cut(s) 574
BisI GCNGC 1 cut(s) 1046
BlsI GCNGC 1 cut(s) 1047
Bme1390I CCNGG 1 cut(s) 1125
Bme18I GGWCC 2 cut(s) 34, 350
BmgT120I GGNCC 3 cut(s) 34, 350, 600
BmiI GGNNCC 2 cut(s) 124, 1422
BmrFI CCNGG 1 cut(s) 1125
BmrI ACTGGG 2 cut(s) 149, 190
BmsI GCATC 2 cut(s) 508, 1336
BmuI ACTGGG 2 cut(s) 149, 190
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 260, 1397
BpuMI CCSGG 1 cut(s) 1125
Bsa29I ATCGAT 1 cut(s) 725
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 2 cut(s) 621, 1331
BsaJI CCNNGG 2 cut(s) 890, 1239
BsaWI WCCGGW 2 cut(s) 1108, 1192
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 637, 1430
Bse1I ACTGG 4 cut(s) 155, 196, 409, 522
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 543
BseCI ATCGAT 1 cut(s) 725
BseDI CCNNGG 2 cut(s) 890, 1239
BseGI GGATG 3 cut(s) 685, 802, 1120
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 3 cut(s) 535, 637, 1430
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 44, 721, 1044
BseNI ACTGG 4 cut(s) 155, 196, 409, 522
BseRI GAGGAG 1 cut(s) 1271
BseXI GCAGC 1 cut(s) 1057
BshFI GGCC 4 cut(s) 513, 601, 862, 895
BshNI GGYRCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 725
BsiHKAI GWGCWC 3 cut(s) 29, 889, 1031
BsiSI CCGG 4 cut(s) 719, 1109, 1124, 1193
BslI CCNNNNNNNGG 3 cut(s) 535, 637, 1430
BsmAI GTCTC 5 cut(s) 530, 552, 621, 1331, 1373
BsmBI CGTCTC 2 cut(s) 552, 1373
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 4 cut(s) 513, 601, 862, 895
Bso31I GGTCTC 2 cut(s) 621, 1331
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 29, 889, 1031
Bsp143I GATC 5 cut(s) 244, 574, 931, 1318, 1420
BspACI CCGC 1 cut(s) 1002
BspANI GGCC 4 cut(s) 513, 601, 862, 895
BspCNI CTCAG 3 cut(s) 43, 720, 1043
BspDI ATCGAT 1 cut(s) 725
BspLI GGNNCC 2 cut(s) 124, 1422
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 3 cut(s) 1313, 1415, 1428
BspT104I TTCGAA 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 2 cut(s) 621, 1331
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 4 cut(s) 155, 196, 409, 522
BssECI CCNNGG 2 cut(s) 890, 1239
BssMI GATC 5 cut(s) 244, 574, 931, 1318, 1420
BssNAI GTATAC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 890, 1239
Bst1107I GTATAC 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 181, 284, 553
Bst6I CTCTTC 2 cut(s) 590, 1275
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 511, 1043
BstDEI CTNAG 4 cut(s) 21, 30, 707, 1030
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 3 cut(s) 685, 802, 1120
BstKTI GATC 5 cut(s) 247, 577, 934, 1321, 1423
BstMAI GTCTC 5 cut(s) 530, 552, 621, 1331, 1373
BstMBI GATC 5 cut(s) 244, 574, 931, 1318, 1420
BstMWI GCNNNNNNNGC 1 cut(s) 901
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 1123
BstSFI CTRYAG 2 cut(s) 283, 1050
BstV1I GCAGC 1 cut(s) 1057
BstX2I RGATCY 3 cut(s) 574, 1318, 1420
BstYI RGATCY 3 cut(s) 574, 1318, 1420
BstZ17I GTATAC 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 725
BsuRI GGCC 4 cut(s) 513, 601, 862, 895
BsuTUI ATCGAT 1 cut(s) 725
BtgZI GCGATG 2 cut(s) 629, 834
BtsCI GGATG 3 cut(s) 685, 802, 1120
BtsIMutI CAGTG 3 cut(s) 303, 366, 941
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 2 cut(s) 511, 1043
Cfr13I GGNCC 3 cut(s) 34, 350, 600
ClaI ATCGAT 1 cut(s) 725
CseI GACGC 1 cut(s) 569
Csp6I GTAC 3 cut(s) 451, 1128, 1459
CviAII CATG 5 cut(s) 239, 657, 733, 762, 1324
CviQI GTAC 3 cut(s) 451, 1128, 1459
DdeI CTNAG 4 cut(s) 21, 30, 707, 1030
DpnI GATC 5 cut(s) 246, 576, 933, 1320, 1422
DpnII GATC 5 cut(s) 244, 574, 931, 1318, 1420
Eam1104I CTCTTC 2 cut(s) 590, 1275
EarI CTCTTC 2 cut(s) 590, 1275
Ecl136II GAGCTC 1 cut(s) 1029
Eco130I CCWWGG 2 cut(s) 890, 1239
Eco147I AGGCCT 2 cut(s) 862, 895
Eco24I GRGCYC 1 cut(s) 1031
Eco31I GGTCTC 2 cut(s) 621, 1331
Eco47I GGWCC 2 cut(s) 34, 350
Eco53kI GAGCTC 1 cut(s) 1029
Eco57I CTGAAG 2 cut(s) 390, 468
Eco91I GGTNACC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 1371
EcoT14I CCWWGG 2 cut(s) 890, 1239
EcoT22I ATGCAT 1 cut(s) 1351
EcoT38I GRGCYC 1 cut(s) 1031
ErhI CCWWGG 2 cut(s) 890, 1239
Esp3I CGTCTC 2 cut(s) 552, 1373
FaeI CATG 5 cut(s) 242, 660, 736, 765, 1327
FatI CATG 5 cut(s) 238, 656, 732, 761, 1323
FauI CCCGC 1 cut(s) 1009
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 1046
FokI GGATG 3 cut(s) 692, 789, 1107
FriOI GRGCYC 1 cut(s) 1031
Fsp4HI GCNGC 1 cut(s) 1046
FspBI CTAG 8 cut(s) 297, 419, 570, 854, 941, 1005, 1068, 1425
GluI GCNGC 1 cut(s) 1046
HaeIII GGCC 4 cut(s) 513, 601, 862, 895
HapII CCGG 4 cut(s) 719, 1109, 1124, 1193
HgaI GACGC 1 cut(s) 569
Hin1II CATG 5 cut(s) 242, 660, 736, 765, 1327
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 9 cut(s) 7, 209, 539, 722, 913, 1058, 1085, 1090, 1165
HpaII CCGG 4 cut(s) 719, 1109, 1124, 1193
HphI GGTGA 4 cut(s) 143, 565, 1207, 1414
Hpy166II GTNNAC 6 cut(s) 50, 115, 414, 704, 873, 1461
Hpy188I TCNGA 5 cut(s) 91, 268, 691, 1026, 1255
Hpy188III TCNNGA 7 cut(s) 32, 277, 353, 419, 667, 1329, 1376
Hpy8I GTNNAC 6 cut(s) 50, 115, 414, 704, 873, 1461
HpyAV CCTTC 9 cut(s) 70, 112, 261, 365, 604, 746, 1393, 1406, 1410
HpyCH4III ACNGT 3 cut(s) 181, 284, 553
HpyCH4V TGCA 8 cut(s) 644, 809, 957, 972, 1045, 1316, 1349, 1439
HpyF10VI GCNNNNNNNGC 1 cut(s) 901
HpyF3I CTNAG 4 cut(s) 21, 30, 707, 1030
Hsp92II CATG 5 cut(s) 242, 660, 736, 765, 1327
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 5 cut(s) 244, 574, 931, 1318, 1420
LmnI GCTCC 1 cut(s) 892
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 2 cut(s) 508, 1336
MaeI CTAG 8 cut(s) 297, 419, 570, 854, 941, 1005, 1068, 1425
MaeIII GTNAC 3 cut(s) 149, 992, 1451
MalI GATC 5 cut(s) 246, 576, 933, 1320, 1422
MboI GATC 5 cut(s) 244, 574, 931, 1318, 1420
MboII GAAGA 7 cut(s) 181, 239, 607, 934, 1220, 1292, 1355
MflI RGATCY 3 cut(s) 574, 1318, 1420
MhlI GDGCHC 3 cut(s) 29, 889, 1031
MluCI AATT 6 cut(s) 316, 337, 357, 1248, 1265, 1371
MlyI GAGTC 1 cut(s) 1079
MmeI TCCRAC 1 cut(s) 1225
Mph1103I ATGCAT 1 cut(s) 1351
MseI TTAA 1 cut(s) 987
MslI CAYNNNNRTG 2 cut(s) 494, 737
MspI CCGG 4 cut(s) 719, 1109, 1124, 1193
MspR9I CCNGG 1 cut(s) 1125
Mva1269I GAATGC 1 cut(s) 849
MwoI GCNNNNNNNGC 1 cut(s) 901
NciI CCSGG 1 cut(s) 1125
NdeII GATC 5 cut(s) 244, 574, 931, 1318, 1420
NlaIII CATG 5 cut(s) 242, 660, 736, 765, 1327
NlaIV GGNNCC 2 cut(s) 124, 1422
NmuCI GTSAC 2 cut(s) 149, 992
NsiI ATGCAT 1 cut(s) 1351
NspV TTCGAA 1 cut(s) 593
PceI AGGCCT 2 cut(s) 862, 895
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 8 cut(s) 7, 209, 539, 722, 913, 1058, 1090, 1165
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 1 cut(s) 1047
PleI GAGTC 1 cut(s) 1079
PpsI GAGTC 1 cut(s) 1079
PpuMI RGGWCCY 1 cut(s) 34
PsiI TTATAA 1 cut(s) 1289
Psp124BI GAGCTC 1 cut(s) 1031
Psp5II RGGWCCY 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 124, 1422
PspPI GGNCC 3 cut(s) 34, 350, 600
PspPPI RGGWCCY 1 cut(s) 34
PsuI RGATCY 3 cut(s) 574, 1318, 1420
RsaI GTAC 3 cut(s) 452, 1129, 1460
RsaNI GTAC 3 cut(s) 451, 1128, 1459
RseI CAYNNNNRTG 2 cut(s) 494, 737
SacI GAGCTC 1 cut(s) 1031
SaqAI TTAA 1 cut(s) 987
SatI GCNGC 1 cut(s) 1046
Sau3AI GATC 5 cut(s) 244, 574, 931, 1318, 1420
Sau96I GGNCC 3 cut(s) 34, 350, 600
SchI GAGTC 1 cut(s) 1079
ScrFI CCNGG 1 cut(s) 1125
SduI GDGCHC 3 cut(s) 29, 889, 1031
SfaNI GCATC 2 cut(s) 508, 1336
SfcI CTRYAG 2 cut(s) 283, 1050
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 2 cut(s) 34, 350
SmiMI CAYNNNNRTG 2 cut(s) 494, 737
SmlI CTYRAG 2 cut(s) 275, 1376
SmoI CTYRAG 2 cut(s) 275, 1376
Sse9I AATT 6 cut(s) 316, 337, 357, 1248, 1265, 1371
SseBI AGGCCT 2 cut(s) 862, 895
SsiI CCGC 1 cut(s) 1002
SspI AATATT 1 cut(s) 1145
SspMI CTAG 8 cut(s) 297, 419, 570, 854, 941, 1005, 1068, 1425
SstI GAGCTC 1 cut(s) 1031
StuI AGGCCT 2 cut(s) 862, 895
StyD4I CCNGG 1 cut(s) 1123
StyI CCWWGG 2 cut(s) 890, 1239
TaaI ACNGT 3 cut(s) 181, 284, 553
TaqI TCGA 4 cut(s) 593, 725, 911, 1088
TaqII GACCGA 1 cut(s) 1355
TasI AATT 6 cut(s) 316, 337, 357, 1248, 1265, 1371
TatI WGTACW 2 cut(s) 450, 1458
TfiI GAWTC 8 cut(s) 7, 209, 539, 722, 913, 1058, 1090, 1165
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TscAI CASTG 3 cut(s) 310, 373, 941
TseFI GTSAC 2 cut(s) 149, 992
TseI GCWGC 1 cut(s) 1045
Tsp45I GTSAC 2 cut(s) 149, 992
TspDTI ATGAA 7 cut(s) 75, 458, 645, 743, 791, 1050, 1109
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 3 cut(s) 310, 373, 941
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 34, 350
XapI RAATTY 2 cut(s) 1248, 1371
XbaI TCTAGA 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 8 cut(s) 297, 419, 570, 854, 941, 1005, 1068, 1425
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.