Prupe.1G146500_v2.0.a1

tRNA rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015140
Physical Location & Seq
Reverse (-)
11528145 .. 11530109
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G146500.2

Sequence Viewer

Length: 663 bp
ATGGCGGTAGAGAGCTATGTGGTGGTGCACAACATAGCCAAGAGGCACAACGTCGGTACACTCGCCCGAAGCGCCACCGCCTTCGGCGTCTCTGAGCTCATCTTGGTCGGCCGCAGAGAGTTCAACGCCTTCGGCAGCCATGGCTCCACCTCGCACCTTCGCTTTCGCCACTTCCACTCCCTCCAAGACGCTCGTCTCTTTCTCAAGGAGAGAGATTGTGATATTTGCGGCGTTGAGATCACTGATGATGCTCTGCCTGTCAATCACCACCCTTTTACCAAGAGCACCGCTTTTCTTCTTGGCAATGAGGGAACAGGCCTTTCTGCCAAAGAATTGGAGATATGTGACTTCTTTGTGTATATTCCACAGTATGGAGGTGGTACCGCTTCCTTGAATGTCACGGTGGCAGCTTCTATTGTGTTGCATCAGTTTGGAGTCTGGGCTGGCTTCCCTGAGAGAACTCGTGATGGGAACAAGTTTATTGTGGCAGAGAAACCTGTAAAACAGACAAGACGAAGTTTTTGTGCAGAAACAGCAGATTCCGTAATTGAAGAGCGAAAATGTAGAAAAGAACATGCTTCTAATGGTTTCTTTGATGAGAATGGAAATGAGAATTCATCTTCTAACCTTCTAGATGGATTGTTTGCTGATGTAAGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

221

Amino Acids

24.32

Weight (kDa)

6.36

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15520
fragaria_vesca FvH4_4g16710
malus_domestica MD13G1177300.v1.1
prunus_persica Prupe.1G146500_v2.0.a1 Prupe.1G146500_v2.0.a1
pyrus_communis pycom13g15280 pycom16g15030
rosa_chinensis RchiOBHm_Chr4g0420161
rosa_laevigata RLG00000007785
rosa_multiflora Rmu_sc0004455.1_g000001
rosa_roxburghii Rroxscaffold_5G00362860
rosa_rugosa Rorug04G0162700
rosa_samantha Rh4AG223500 Rh4BG226100 Rh4DG222300
rosa_wichuraiana Rw4G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 661
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 6 cut(s) 5, 78, 112, 228, 288, 384
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 58, 382
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 124, 394, 551
AluBI AGCT 3 cut(s) 15, 97, 410
AluI AGCT 3 cut(s) 15, 97, 410
Alw21I GWGCWC 3 cut(s) 30, 99, 287
Alw26I GTCTC 2 cut(s) 94, 200
Alw44I GTGCAC 1 cut(s) 26
AoxI GGCC 2 cut(s) 109, 316
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 2 cut(s) 135, 407
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 462
Bbv12I GWGCWC 3 cut(s) 30, 99, 287
BbvI GCAGC 2 cut(s) 147, 419
BccI CCATC 2 cut(s) 461, 629
BcoDI GTCTC 2 cut(s) 94, 200
BfaI CTAG 1 cut(s) 632
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 4 cut(s) 112, 136, 229, 408
BlsI GCNGC 4 cut(s) 113, 137, 230, 409
BmiI GGNNCC 2 cut(s) 145, 382
BmsI GCATC 2 cut(s) 238, 433
BoxI GACNNNNGTC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 84, 444
BseSI GKGCMC 1 cut(s) 30
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 147, 419
BsgI GTGCAG 1 cut(s) 546
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 318
BshNI GGYRCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 30, 99, 287
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 94, 200
BsmBI CGTCTC 2 cut(s) 94, 200
BsnI GGCC 2 cut(s) 111, 318
Bsp1286I GDGCHC 3 cut(s) 30, 99, 287
Bsp143I GATC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 6 cut(s) 5, 78, 112, 228, 288, 384
BspANI GGCC 2 cut(s) 111, 318
BspCNI CTCAG 2 cut(s) 85, 445
BspLI GGNNCC 2 cut(s) 145, 382
BspQI GCTCTTC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 369, 403
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 2 cut(s) 93, 453
BstDSI CCRYGG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 94, 200
BstMBI GATC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 71, 141, 533
BstNSI RCATGY 1 cut(s) 578
BstPAI GACNNNNGTC 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 147, 419
BstXI CCANNNNNNTGG 1 cut(s) 334
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 111, 318
BtgI CCRYGG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 74
CseI GACGC 2 cut(s) 76, 197
Csp6I GTAC 2 cut(s) 57, 381
CviAII CATG 2 cut(s) 140, 575
CviQI GTAC 2 cut(s) 57, 381
DdeI CTNAG 2 cut(s) 93, 453
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 2 cut(s) 94, 200
FaeI CATG 2 cut(s) 143, 578
FaiI YATR 8 cut(s) 18, 35, 141, 343, 360, 372, 576, 661
FatI CATG 2 cut(s) 139, 574
Fnu4HI GCNGC 4 cut(s) 112, 136, 229, 408
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 112, 136, 229, 408
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 73
GluI GCNGC 4 cut(s) 112, 136, 229, 408
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 2 cut(s) 111, 318
HgaI GACGC 2 cut(s) 76, 197
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 143, 578
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 435, 539
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 28, 59
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 464, 632
Hpy8I GTNNAC 2 cut(s) 28, 59
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 91, 139, 167, 638
HpyCH4III ACNGT 2 cut(s) 369, 403
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 28, 424, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 141, 533
HpyF3I CTNAG 2 cut(s) 93, 453
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 143, 578
HspAI GCGC 1 cut(s) 72
KpnI GGTACC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 6 cut(s) 270, 300, 424, 429, 465, 510
Lsp1109I GCAGC 2 cut(s) 147, 419
LweI GCATC 2 cut(s) 238, 433
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 344, 397
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 3 cut(s) 287, 563, 612
MhlI GDGCHC 3 cut(s) 30, 99, 287
MluCI AATT 3 cut(s) 332, 546, 613
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 5 cut(s) 36, 160, 191, 301, 368
MwoI GCNNNNNNNGC 3 cut(s) 71, 141, 533
NcoI CCATGG 1 cut(s) 139
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 143, 578
NlaIV GGNNCC 2 cut(s) 145, 382
NmuCI GTSAC 2 cut(s) 344, 397
NspI RCATGY 1 cut(s) 578
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 4 cut(s) 113, 137, 230, 409
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PshAI GACNNNNGTC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 145, 382
RsaI GTAC 2 cut(s) 58, 382
RsaNI GTAC 2 cut(s) 57, 381
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 546
SatI GCNGC 4 cut(s) 112, 136, 229, 408
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 444
SduI GDGCHC 3 cut(s) 30, 99, 287
SetI ASST 9 cut(s) 17, 54, 99, 152, 159, 379, 412, 499, 630
SfaNI GCATC 2 cut(s) 238, 433
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 332, 546, 613
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 6 cut(s) 5, 78, 112, 228, 288, 384
SspMI CTAG 1 cut(s) 632
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 318
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 369, 403
TaiI ACGT 1 cut(s) 54
TasI AATT 3 cut(s) 332, 546, 613
TauI GCSGC 2 cut(s) 114, 231
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 344, 397
TseI GCWGC 2 cut(s) 135, 407
Tsp45I GTSAC 2 cut(s) 344, 397
TspDTI ATGAA 1 cut(s) 606
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 26
XapI RAATTY 1 cut(s) 613
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 1 cut(s) 578
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.