pycom16g15030

tRNA rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015140
Physical Location & Seq
Reverse (-)
11008726 .. 11010505
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15030.3

Sequence Viewer

Length: 663 bp
ATGGAGGTAGAGTGCTATGTGGTGGTGCACAACATAGCGAAGAGGCACAACGTGGGCACGCTCGCCCGGAGCGCCACCGCCTTCGGCGTCTCTGAGCTGATTCTGGTCGGCCGCCGAGAATTCAACGCCTTCGGTAGCCATGGCTCCACCACACACCTTCGCTTTCGCCACTTCCACTCCCTTCAAGACGCCCAACTCTATCTCAAGGAGAGAGATTGTGATATATGCGGCGTTGAGATAACTGATAATGCTCTGCCCGTAAATCATCATCCTTTCACCAAGAGCACTGCTTTTCTTCTTGGCAATGAGGGAACGGGCCTTTCTGCTAAAGAATTGGAAATATGCGACTTCTTTGTGTATATTCCGCAGTATGGAGGTGGTACTGCTTCCTTGAATGTGACCGTAGCAACTTCTATCGTGCTGCATCACTTTGGAGTTTGGGCTGGCTTCCCTGAGAGAACTCGTGAAGGGAGCAAGTTTATTGTGGCAGAGAAACCTGAAAAGCAGACAAGACGAAGTTTTTGTGCAGAAACAGCAGATTCCGTCATTAAAGAGCGAAAATGCAGAAAAGAATTTGCTGCTAATGGTTTCTTTGATGAGAGTGGAAATGAAAATTCATCTTCTAACCTTCTAGATGGATTGTTTGCTGATGTAAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

221

Amino Acids

24.42

Weight (kDa)

6.36

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15520
fragaria_vesca FvH4_4g16710
malus_domestica MD13G1177300.v1.1
prunus_persica Prupe.1G146500_v2.0.a1 Prupe.1G146500_v2.0.a1
pyrus_communis pycom13g15280 pycom16g15030
rosa_chinensis RchiOBHm_Chr4g0420161
rosa_laevigata RLG00000007785
rosa_multiflora Rmu_sc0004455.1_g000001
rosa_roxburghii Rroxscaffold_5G00362860
rosa_rugosa Rorug04G0162700
rosa_samantha Rh4AG223500 Rh4BG226100 Rh4DG222300
rosa_wichuraiana Rw4G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 78, 112, 228, 365
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 119, 572, 613
AcyI GRCGYC 2 cut(s) 87, 189
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 124, 185, 394
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 2 cut(s) 30, 287
Alw26I GTCTC 1 cut(s) 94
Alw44I GTGCAC 1 cut(s) 26
AoxI GGCC 2 cut(s) 109, 316
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 2 cut(s) 421, 578
ApoI RAATTY 3 cut(s) 119, 572, 613
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 2 cut(s) 30, 59
BauI CACGAG 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 30, 287
BbvI GCAGC 2 cut(s) 408, 565
BccI CCATC 1 cut(s) 629
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 632
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 4 cut(s) 112, 229, 422, 579
BlsI GCNGC 4 cut(s) 113, 230, 423, 580
Bme1390I CCNGG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 67
BsaHI GRCGYC 2 cut(s) 87, 189
BsaJI CCNNGG 1 cut(s) 139
BsaXI ACNNNNNCTCC 3 cut(s) 26, 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 84, 444
BseSI GKGCMC 2 cut(s) 30, 59
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 408, 565
BsgI GTGCAG 1 cut(s) 546
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 318
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 30, 287
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 111, 318
Bsp1286I GDGCHC 3 cut(s) 30, 59, 287
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 4 cut(s) 78, 112, 228, 365
BspANI GGCC 2 cut(s) 111, 318
BspCNI CTCAG 2 cut(s) 85, 445
BspLI GGNNCC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 139
BssNI GRCGYC 2 cut(s) 87, 189
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 2 cut(s) 87, 189
BstC8I GCNNGC 3 cut(s) 59, 63, 445
BstDEI CTNAG 2 cut(s) 93, 453
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 94
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 71, 533
BstSCI CCNGG 1 cut(s) 65
BstSLI GKGCMC 2 cut(s) 30, 59
BstV1I GCAGC 2 cut(s) 408, 565
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 111, 318
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 59, 63, 445
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 2 cut(s) 76, 197
Csp6I GTAC 1 cut(s) 381
CviAII CATG 1 cut(s) 140
CviJI RGCY 7 cut(s) 97, 111, 138, 144, 318, 443, 447
CviKI_1 RGCY 7 cut(s) 97, 111, 138, 144, 318, 443, 447
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 2 cut(s) 93, 453
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 1 cut(s) 143
FaiI YATR 9 cut(s) 18, 35, 141, 224, 226, 343, 360, 372, 661
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 112, 229, 422, 579
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 4 cut(s) 112, 229, 422, 579
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 73
GluI GCNGC 4 cut(s) 112, 229, 422, 579
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 2 cut(s) 111, 318
HapII CCGG 1 cut(s) 67
HgaI GACGC 2 cut(s) 76, 197
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 2 cut(s) 87, 189
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 100, 539
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 185, 464, 632
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 6 cut(s) 91, 139, 167, 191, 461, 638
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 28, 424, 527, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 533
HpyF3I CTNAG 2 cut(s) 93, 453
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 2 cut(s) 87, 189
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 72
LmnI GCTCC 3 cut(s) 69, 149, 471
LpnPI CCDG 5 cut(s) 80, 89, 429, 465, 510
Lsp1109I GCAGC 2 cut(s) 408, 565
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 397
MboII GAAGA 3 cut(s) 52, 287, 612
MhlI GDGCHC 3 cut(s) 30, 59, 287
MluCI AATT 4 cut(s) 119, 332, 572, 613
MnlI CCTC 3 cut(s) 36, 301, 368
MseI TTAA 1 cut(s) 549
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 71, 533
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 139
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 100, 539
PkrI GCNGC 4 cut(s) 113, 230, 423, 580
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 4 cut(s) 112, 229, 422, 579
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 3 cut(s) 30, 59, 287
SetI ASST 7 cut(s) 9, 54, 99, 159, 379, 499, 630
SfaNI GCATC 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 119, 332, 572, 613
SsiI CCGC 4 cut(s) 78, 112, 228, 365
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 54
TasI AATT 4 cut(s) 119, 332, 572, 613
TauI GCSGC 2 cut(s) 114, 231
TfiI GAWTC 2 cut(s) 100, 539
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 421, 578
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 606, 624
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 26
XapI RAATTY 3 cut(s) 119, 572, 613
XbaI TCTAGA 1 cut(s) 631
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.